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Items: 1 to 50 of 61

1.

Population analysis of D6-like plasmid prophage variants associated with specific IncC plasmid types in the emerging Salmonella Typhimurium ST213 genotype.

Silva C, Calva E, Fernández-Mora M, Puente JL, Vinuesa P.

PLoS One. 2019 Oct 18;14(10):e0223975. doi: 10.1371/journal.pone.0223975. eCollection 2019.

2.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE.

Nat Microbiol. 2019 Oct;4(10):1727-1736. doi: 10.1038/s41564-019-0494-6. Epub 2019 Jul 8.

PMID:
31285584
3.

Minimal standards for the description of new genera and species of rhizobia and agrobacteria.

de Lajudie PM, Andrews M, Ardley J, Eardly B, Jumas-Bilak E, Kuzmanović N, Lassalle F, Lindström K, Mhamdi R, Martínez-Romero E, Moulin L, Mousavi SA, Nesme X, Peix A, Puławska J, Steenkamp E, Stępkowski T, Tian CF, Vinuesa P, Wei G, Willems A, Zilli J, Young P.

Int J Syst Evol Microbiol. 2019 Jul;69(7):1852-1863. doi: 10.1099/ijsem.0.003426. Epub 2019 May 29.

PMID:
31140963
4.

Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters.

González V, Santamaría RI, Bustos P, Pérez-Carrascal OM, Vinuesa P, Juárez S, Martínez-Flores I, Cevallos MÁ, Brom S, Martínez-Romero E, Romero D.

Front Microbiol. 2019 Apr 30;10:910. doi: 10.3389/fmicb.2019.00910. eCollection 2019.

5.

Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256.

Giner-Lamia J, Vinuesa P, Betancor L, Silva C, Bisio J, Soleto L, Chabalgoity JA, Puente JL; Salmonella CYTED Network, García-Del Portillo F.

BMC Genomics. 2019 Jan 31;20(1):99. doi: 10.1186/s12864-018-5352-z.

6.

Analyzing the functional divergence of Slo1 and Slo3 channel subfamilies.

Vicens A, Vinuesa P, Arenas M, Treviño CL.

Mol Phylogenet Evol. 2019 Apr;133:33-41. doi: 10.1016/j.ympev.2018.12.026. Epub 2018 Dec 23.

PMID:
30586650
7.

The Genomic Basis of Intrinsic and Acquired Antibiotic Resistance in the Genus Serratia.

Sandner-Miranda L, Vinuesa P, Cravioto A, Morales-Espinosa R.

Front Microbiol. 2018 May 11;9:828. doi: 10.3389/fmicb.2018.00828. eCollection 2018.

8.
9.
10.

Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris).

Santamaría RI, Bustos P, Pérez-Carrascal OM, Miranda-Sánchez F, Vinuesa P, Martínez-Flores I, Juárez S, Lozano L, Martínez-Romero E, Cevallos MÁ, Romero D, Dávila G, Ormeño-Orrillo E, González V.

Genome Announc. 2017 Jul 27;5(30). pii: e00645-17. doi: 10.1128/genomeA.00645-17.

11.

Genotyping Toxoplasma gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico.

Martínez-Flores WA, Palma-García JM, Caballero-Ortega H, Del Viento-Camacho A, López-Escamilla E, Martínez-Hernández F, Vinuesa P, Correa D, Maravilla P.

Vector Borne Zoonotic Dis. 2017 Jul;17(7):495-502. doi: 10.1089/vbz.2016.2085. Epub 2017 May 22.

PMID:
28530509
12.

Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean (Phaseolus vulgaris).

Bustos P, Santamaría RI, Pérez-Carrascal OM, Acosta JL, Lozano L, Juárez S, Martínez-Flores I, Martínez-Romero E, Cevallos MÁ, Romero D, Dávila G, Vinuesa P, Miranda F, Ormeño E, González V.

Genome Announc. 2017 Mar 16;5(11). pii: e00030-17. doi: 10.1128/genomeA.00030-17.

13.

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.

Contreras-Moreira B, Cantalapiedra CP, García-Pereira MJ, Gordon SP, Vogel JP, Igartua E, Casas AM, Vinuesa P.

Front Plant Sci. 2017 Feb 14;8:184. doi: 10.3389/fpls.2017.00184. eCollection 2017.

14.

A comprehensive phylogenetic analysis of copper transporting P1B ATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes.

Cubillas C, Miranda-Sánchez F, González-Sánchez A, Elizalde JP, Vinuesa P, Brom S, García-de Los Santos A.

Microbiologyopen. 2017 Aug;6(4). doi: 10.1002/mbo3.452. Epub 2017 Feb 20.

15.

Population genomics of the symbiotic plasmids of sympatric nitrogen-fixing Rhizobium species associated with Phaseolus vulgaris.

Pérez Carrascal OM, VanInsberghe D, Juárez S, Polz MF, Vinuesa P, González V.

Environ Microbiol. 2016 Sep;18(8):2660-76. doi: 10.1111/1462-2920.13415. Epub 2016 Jul 12.

PMID:
27312778
16.

Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Strain SO3 (Sequence Type 302) Isolated from a Baby with Meningitis in Mexico.

Vinuesa P, Puente JL, Calva E, Zaidi MB, Silva C.

Genome Announc. 2016 Apr 21;4(2). pii: e00285-16. doi: 10.1128/genomeA.00285-16.

17.

Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Strain SO2 (Sequence Type 302) Isolated from an Asymptomatic Child in Mexico.

Silva C, Calva E, Puente JL, Zaidi MB, Vinuesa P.

Genome Announc. 2016 Apr 14;4(2). pii: e00253-16. doi: 10.1128/genomeA.00253-16.

18.

Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Strain YU15 (Sequence Type 19) Harboring the Salmonella Genomic Island 1 and Virulence Plasmid pSTV.

Silva C, Calva E, Puente JL, Zaidi MB, Vinuesa P.

Genome Announc. 2016 Apr 14;4(2). pii: e00252-16. doi: 10.1128/genomeA.00252-16.

19.

Draft Genome Sequence of an Endophytic Actinoplanes Species, Encoding Uncommon trans-Acyltransferase Polyketide Synthases.

Centeno-Leija S, Vinuesa P, Rodríguez-Peña K, Trenado-Uribe M, Cárdenas-Conejo Y, Serrano-Posada H, Rodríguez-Sanoja R, Sánchez S.

Genome Announc. 2016 Mar 24;4(2). pii: e00164-16. doi: 10.1128/genomeA.00164-16.

20.

Complete Genome Sequence of Serratia marcescens SmUNAM836, a Nonpigmented Multidrug-Resistant Strain Isolated from a Mexican Patient with Obstructive Pulmonary Disease.

Sandner-Miranda L, Vinuesa P, Soberón-Chávez G, Morales-Espinosa R.

Genome Announc. 2016 Jan 21;4(1). pii: e01417-15. doi: 10.1128/genomeA.01417-15.

22.

Complete Genome Sequence of a Human-Invasive Salmonella enterica Serovar Typhimurium Strain of the Emerging Sequence Type 213 Harboring a Multidrug Resistance IncA/C Plasmid and a blaCMY-2-Carrying IncF Plasmid.

Silva C, Calva E, Calva JJ, Wiesner M, Fernández-Mora M, Puente JL, Vinuesa P.

Genome Announc. 2015 Nov 12;3(6). pii: e01323-15. doi: 10.1128/genomeA.01323-15.

23.

Diversity patterns of Rhizobiaceae communities inhabiting soils, root surfaces and nodules reveal a strong selection of rhizobial partners by legumes.

Miranda-Sánchez F, Rivera J, Vinuesa P.

Environ Microbiol. 2016 Sep;18(8):2375-91. doi: 10.1111/1462-2920.13061. Epub 2015 Dec 2.

PMID:
26395550
24.

Complete Genome Sequencing of a Multidrug-Resistant and Human-Invasive Salmonella enterica Serovar Typhimurium Strain of the Emerging Sequence Type 213 Genotype.

Calva E, Silva C, Zaidi MB, Sanchez-Flores A, Estrada K, Silva GG, Soto-Jiménez LM, Wiesner M, Fernández-Mora M, Edwards RA, Vinuesa P.

Genome Announc. 2015 Jun 18;3(3). pii: e00663-15. doi: 10.1128/genomeA.00663-15.

25.

Characterization of the bacterial biodiversity in Pico cheese (an artisanal Azorean food).

Riquelme C, Câmara S, Dapkevicius Mde L, Vinuesa P, da Silva CC, Malcata FX, Rego OA.

Int J Food Microbiol. 2015 Jan 2;192:86-94. doi: 10.1016/j.ijfoodmicro.2014.09.031. Epub 2014 Oct 14.

PMID:
25440551
26.

Robust identification of orthologues and paralogues for microbial pan-genomics using GET_HOMOLOGUES: a case study of pIncA/C plasmids.

Vinuesa P, Contreras-Moreira B.

Methods Mol Biol. 2015;1231:203-32. doi: 10.1007/978-1-4939-1720-4_14.

PMID:
25343868
27.

The cation diffusion facilitator protein EmfA of Rhizobium etli belongs to a novel subfamily of Mn(2+)/Fe(2+) transporters conserved in α-proteobacteria.

Cubillas C, Vinuesa P, Tabche ML, Dávalos A, Vázquez A, Hernández-Lucas I, Romero D, García-de los Santos A.

Metallomics. 2014 Oct;6(10):1808-15. doi: 10.1039/c4mt00135d. Epub 2014 Jul 23.

PMID:
25054342
28.

Cu(I)-mediated allosteric switching in a copper-sensing operon repressor (CsoR).

Chang FM, Coyne HJ, Cubillas C, Vinuesa P, Fang X, Ma Z, Ma D, Helmann JD, García-de los Santos A, Wang YX, Dann CE 3rd, Giedroc DP.

J Biol Chem. 2014 Jul 4;289(27):19204-17. doi: 10.1074/jbc.M114.556704. Epub 2014 May 15.

29.

GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis.

Contreras-Moreira B, Vinuesa P.

Appl Environ Microbiol. 2013 Dec;79(24):7696-701. doi: 10.1128/AEM.02411-13. Epub 2013 Oct 4.

30.

Phylogenomic analysis of Cation Diffusion Facilitator proteins uncovers Ni2+/Co2+ transporters.

Cubillas C, Vinuesa P, Tabche ML, García-de los Santos A.

Metallomics. 2013 Dec;5(12):1634-43. doi: 10.1039/c3mt00204g. Epub 2013 Sep 30.

PMID:
24077251
31.

Phylogenetic analysis of burkholderia species by multilocus sequence analysis.

Estrada-de los Santos P, Vinuesa P, Martínez-Aguilar L, Hirsch AM, Caballero-Mellado J.

Curr Microbiol. 2013 Jul;67(1):51-60. doi: 10.1007/s00284-013-0330-9. Epub 2013 Feb 13.

PMID:
23404651
32.

Characterization of an influenza A virus in Mexican swine that is related to the A/H1N1/2009 pandemic clade.

Escalera-Zamudio M, Cobián-Güemes G, de los Dolores Soto-del Río M, Isa P, Sánchez-Betancourt I, Parissi-Crivelli A, Martínez-Cázares MT, Romero P, Velázquez-Salinas L, Huerta-Lozano B, Nelson M, Montero H, Vinuesa P, López S, Arias CF.

Virology. 2012 Nov 10;433(1):176-82. doi: 10.1016/j.virol.2012.08.003. Epub 2012 Aug 24.

33.

Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination.

Acosta JL, Eguiarte LE, Santamaría RI, Bustos P, Vinuesa P, Martínez-Romero E, Dávila G, González V.

BMC Evol Biol. 2011 Oct 17;11:305. doi: 10.1186/1471-2148-11-305.

34.

Potentially pathogenic nontuberculous mycobacteria found in aquatic systems. Analysis from a reclaimed water and water distribution system in Mexico City.

Castillo-Rodal AI, Mazari-Hiriart M, Lloret-Sánchez LT, Sachman-Ruiz B, Vinuesa P, López-Vidal Y.

Eur J Clin Microbiol Infect Dis. 2012 May;31(5):683-94. doi: 10.1007/s10096-011-1359-y. Epub 2011 Jul 30.

PMID:
21805195
35.

The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain.

Cervantes L, Bustos P, Girard L, Santamaría RI, Dávila G, Vinuesa P, Romero D, Brom S.

BMC Microbiol. 2011 Jun 25;11:149. doi: 10.1186/1471-2180-11-149.

36.

Extended-spectrum β-lactamase-producing enterobacteriaceae causing nosocomial infections in Mexico. A retrospective and multicenter study.

Silva-Sanchez J, Garza-Ramos JU, Reyna-Flores F, Sánchez-Perez A, Rojas-Moreno T, Andrade-Almaraz V, Pastrana J, Castro-Romero JI, Vinuesa P, Barrios H, Cervantes C.

Arch Med Res. 2011 Feb;42(2):156-62. doi: 10.1016/j.arcmed.2011.02.004.

PMID:
21565630
37.

Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia.

Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D, Shah GR, Santos SR, Krishnan HB, Odee D, Moreira FM, Sprent JI, Young JP, James EK.

Environ Microbiol. 2009 Oct;11(10):2510-25. doi: 10.1111/j.1462-2920.2009.01975.x. Epub 2009 Jun 25.

PMID:
19555380
38.

primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies.

Contreras-Moreira B, Sachman-Ruiz B, Figueroa-Palacios I, Vinuesa P.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W95-W100. doi: 10.1093/nar/gkp377. Epub 2009 May 21.

39.

A comparative structural bioinformatics analysis of the insulin receptor family ectodomain based on phylogenetic information.

Rentería ME, Gandhi NS, Vinuesa P, Helmerhorst E, Mancera RL.

PLoS One. 2008;3(11):e3667. doi: 10.1371/journal.pone.0003667. Epub 2008 Nov 7.

40.

Multilocus sequence analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the asiatic continent.

Vinuesa P, Rojas-Jiménez K, Contreras-Moreira B, Mahna SK, Prasad BN, Moe H, Selvaraju SB, Thierfelder H, Werner D.

Appl Environ Microbiol. 2008 Nov;74(22):6987-96. doi: 10.1128/AEM.00875-08. Epub 2008 Sep 12.

41.

[Update on cardiac imaging techniques. Echocardiography, cardiac magnetic resonance and multidetector computed tomography].

de Vinuesa PG, del Castillo SV, Torres RA, Bardera JC.

Rev Esp Cardiol. 2008 Feb;61 Suppl 1:109-31. Review. Spanish.

PMID:
18341940
42.

Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico.

Cerritos R, Vinuesa P, Eguiarte LE, Herrera-Estrella L, Alcaraz-Peraza LD, Arvizu-Gómez JL, Olmedo G, Ramirez E, Siefert JL, Souza V.

Int J Syst Evol Microbiol. 2008 Apr;58(Pt 4):919-23. doi: 10.1099/ijs.0.64959-0.

PMID:
18398195
43.

The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions.

Sohlenkamp C, Galindo-Lagunas KA, Guan Z, Vinuesa P, Robinson S, Thomas-Oates J, Raetz CR, Geiger O.

Mol Plant Microbe Interact. 2007 Nov;20(11):1421-30.

44.

Cor triatriatum sinistrum in an elderly man.

Almendro-Delia M, Trujillo-Berraquero F, Araji O, de Vinuesa PG, Fernández JM.

Int J Cardiol. 2008 Apr 10;125(2):e27-9. Epub 2007 Oct 18.

PMID:
17949834
45.

A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides.

Poggio S, Abreu-Goodger C, Fabela S, Osorio A, Dreyfus G, Vinuesa P, Camarena L.

J Bacteriol. 2007 Apr;189(8):3208-16. Epub 2007 Feb 9.

46.

Molecular diversity of native bradyrhizobia isolated from lima bean (Phaseolus lunatus L.) in Peru.

Ormeño-Orrillo E, Vinuesa P, Zúñiga-Dávila D, Martínez-Romero E.

Syst Appl Microbiol. 2006 Apr;29(3):253-62. Epub 2005 Oct 7.

PMID:
16564961
47.

A ClC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance.

Rojas-Jiménez K, Sohlenkamp C, Geiger O, Martínez-Romero E, Werner D, Vinuesa P.

Mol Plant Microbe Interact. 2005 Nov;18(11):1175-85.

48.

Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes.

Silva C, Vinuesa P, Eguiarte LE, Souza V, Martínez-Romero E.

Mol Ecol. 2005 Nov;14(13):4033-50.

PMID:
16262857
49.
50.

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