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Items: 39

1.

Draft Genome Sequences of Four Aeromonas salmonicida subsp. achromogenes Strains, 23051, 23053, 23055, and 23056, Isolated from Senegalese Sole (Solea senegalensis).

Vincent AT, Le Breton A, Bernatchez A, Gagné-Thivierge C, Paquet VE, Thibault E, Charette SJ, Gantelet H.

Microbiol Resour Announc. 2019 Aug 15;8(33). pii: e00631-19. doi: 10.1128/MRA.00631-19.

2.

One Aeromonas salmonicida subsp. salmonicida isolate with a pAsa5 variant bearing antibiotic resistance and a pRAS3 variant making a link with a swine pathogen.

Massicotte MA, Vincent AT, Schneider A, Paquet VE, Frenette M, Charette SJ.

Sci Total Environ. 2019 Nov 10;690:313-320. doi: 10.1016/j.scitotenv.2019.06.456. Epub 2019 Jun 28.

PMID:
31299566
3.

Regulation of waaH by PhoB during Pi Starvation Promotes Biofilm Formation by Escherichia coli O157:H7.

Vogeleer P, Vincent AT, Chekabab SM, Charette SJ, Novikov A, Caroff M, Beaudry F, Jacques M, Harel J.

J Bacteriol. 2019 Aug 22;201(18). pii: e00093-19. doi: 10.1128/JB.00093-19. Print 2019 Sep 15.

PMID:
31262835
4.

Revisiting the taxonomy and evolution of pathogenicity of the genus Leptospira through the prism of genomics.

Vincent AT, Schiettekatte O, Goarant C, Neela VK, Bernet E, Thibeaux R, Ismail N, Mohd Khalid MKN, Amran F, Masuzawa T, Nakao R, Amara Korba A, Bourhy P, Veyrier FJ, Picardeau M.

PLoS Negl Trop Dis. 2019 May 23;13(5):e0007270. doi: 10.1371/journal.pntd.0007270. eCollection 2019 May.

5.

Beyond the A-layer: adsorption of lipopolysaccharides and characterization of bacteriophage-insensitive mutants of Aeromonas salmonicida subsp. salmonicida.

Paquet VE, Vincent AT, Moineau S, Charette SJ.

Mol Microbiol. 2019 Aug;112(2):667-677. doi: 10.1111/mmi.14308. Epub 2019 Jun 4.

PMID:
31115938
6.

Platelet abnormalities in Huntington's disease.

Denis HL, Lamontagne-Proulx J, St-Amour I, Mason SL, Rowley JW, Cloutier N, Tremblay MÈ, Vincent AT, Gould PV, Chouinard S, Weyrich AS, Rondina MT, Barker RA, Boilard E, Cicchetti F.

J Neurol Neurosurg Psychiatry. 2019 Mar;90(3):272-283. doi: 10.1136/jnnp-2018-318854. Epub 2018 Dec 19.

7.

Investigation of the virulence and genomics of Aeromonas salmonicida strains isolated from human patients.

Vincent AT, Fernández-Bravo A, Sanchis M, Mayayo E, Figueras MJ, Charette SJ.

Infect Genet Evol. 2019 Mar;68:1-9. doi: 10.1016/j.meegid.2018.11.019. Epub 2018 Nov 28.

PMID:
30502493
8.

The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity.

Freschi L, Vincent AT, Jeukens J, Emond-Rheault JG, Kukavica-Ibrulj I, Dupont MJ, Charette SJ, Boyle B, Levesque RC.

Genome Biol Evol. 2019 Jan 1;11(1):109-120. doi: 10.1093/gbe/evy259.

9.

Portrait of blood-derived extracellular vesicles in patients with Parkinson's disease.

Lamontagne-Proulx J, St-Amour I, Labib R, Pilon J, Denis HL, Cloutier N, Roux-Dalvai F, Vincent AT, Mason SL, Williams-Gray C, Duchez AC, Droit A, Lacroix S, Dupré N, Langlois M, Chouinard S, Panisset M, Barker RA, Boilard E, Cicchetti F.

Neurobiol Dis. 2019 Apr;124:163-175. doi: 10.1016/j.nbd.2018.11.002. Epub 2018 Nov 5.

PMID:
30408591
10.

The Mycobacterial Cell Envelope: A Relict From the Past or the Result of Recent Evolution?

Vincent AT, Nyongesa S, Morneau I, Reed MB, Tocheva EI, Veyrier FJ.

Front Microbiol. 2018 Oct 9;9:2341. doi: 10.3389/fmicb.2018.02341. eCollection 2018.

11.

A brief history of bioinformatics.

Gauthier J, Vincent AT, Charette SJ, Derome N.

Brief Bioinform. 2018 Aug 3. doi: 10.1093/bib/bby063. [Epub ahead of print]

PMID:
30084940
12.

Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira.

Schiettekatte O, Vincent AT, Malosse C, Lechat P, Chamot-Rooke J, Veyrier FJ, Picardeau M, Bourhy P.

Sci Rep. 2018 Aug 6;8(1):11781. doi: 10.1038/s41598-018-29983-6.

13.

Completion of genome of Aeromonas salmonicida subsp. salmonicida 01-B526 reveals how sequencing technologies can influence sequence quality and result interpretations.

Vincent AT, Charette SJ.

New Microbes New Infect. 2018 May 31;25:24-26. doi: 10.1016/j.nmni.2018.05.007. eCollection 2018 Sep.

14.

A multi-host approach to identify a transposon mutant of Pseudomonas aeruginosa LESB58 lacking full virulence.

Gagné-Thivierge C, Kukavica-Ibrulj I, Filion G, Dekimpe V, Tan SGE, Vincent AT, Déziel É, Levesque RC, Charette SJ.

BMC Res Notes. 2018 Mar 27;11(1):198. doi: 10.1186/s13104-018-3308-7.

15.

Unexpected diversity in the mobilome of a Pseudomonas aeruginosa strain isolated from a dental unit waterline revealed by SMRT Sequencing.

Vincent AT, Charette SJ, Barbeau J.

Genome. 2018 May;61(5):359-365. doi: 10.1139/gen-2017-0239. Epub 2018 Mar 16.

PMID:
29546998
16.

The Role for the Small Cryptic Plasmids As Moldable Vectors for Genetic Innovation in Aeromonas salmonicida subsp. salmonicida.

Attéré SA, Vincent AT, Paccaud M, Frenette M, Charette SJ.

Front Genet. 2017 Dec 15;8:211. doi: 10.3389/fgene.2017.00211. eCollection 2017.

17.

Genomic and phenotypic characterization of an atypical Aeromonas salmonicida strain isolated from a lumpfish and producing unusual granular structures.

Rouleau FD, Vincent AT, Charette SJ.

J Fish Dis. 2018 Apr;41(4):673-681. doi: 10.1111/jfd.12769. Epub 2018 Jan 9.

PMID:
29315617
18.

Strong Genomic and Phenotypic Heterogeneity in the Aeromonas sobria Species Complex.

Gauthier J, Vincent AT, Charette SJ, Derome N.

Front Microbiol. 2017 Dec 8;8:2434. doi: 10.3389/fmicb.2017.02434. eCollection 2017.

19.

Study of mesophilic Aeromonas salmonicida A527 strain sheds light on the species' lifestyles and taxonomic dilemma.

Vincent AT, Rouleau FD, Moineau S, Charette SJ.

FEMS Microbiol Lett. 2017 Dec 15;364(23). doi: 10.1093/femsle/fnx239.

PMID:
29126137
20.

Genomic characterisation of environmental Pseudomonas aeruginosa isolated from dental unit waterlines revealed the insertion sequence ISPa11 as a chaotropic element.

Vincent AT, Freschi L, Jeukens J, Kukavica-Ibrulj I, Emond-Rheault JG, Leduc A, Boyle B, Jean-Pierre F, Groleau MC, Déziel E, Barbeau J, Charette SJ, Levesque RC.

FEMS Microbiol Ecol. 2017 Sep 1;93(9). doi: 10.1093/femsec/fix106.

PMID:
28934400
21.

Implementing a web-based introductory bioinformatics course for non-bioinformaticians that incorporates practical exercises.

Vincent AT, Bourbonnais Y, Brouard JS, Deveau H, Droit A, Gagné SM, Guertin M, Lemieux C, Rathier L, Charette SJ, Lagüe P.

Biochem Mol Biol Educ. 2018 Jan;46(1):31-38. doi: 10.1002/bmb.21086. Epub 2017 Sep 13.

PMID:
28902453
22.

Characterization and diversity of phages infecting Aeromonas salmonicida subsp. salmonicida.

Vincent AT, Paquet VE, Bernatchez A, Tremblay DM, Moineau S, Charette SJ.

Sci Rep. 2017 Aug 1;7(1):7054. doi: 10.1038/s41598-017-07401-7.

23.

Plasmid composition in Aeromonas salmonicida subsp. salmonicida 01-B526 unravels unsuspected type three secretion system loss patterns.

Tanaka KH, Vincent AT, Emond-Rheault JG, Adamczuk M, Frenette M, Charette SJ.

BMC Genomics. 2017 Jul 12;18(1):528. doi: 10.1186/s12864-017-3921-1.

24.

A pan-genomic approach to understand the basis of host adaptation in Achromobacter.

Jeukens J, Freschi L, Vincent AT, Emond-Rheault JG, Kukavica-Ibrulj I, Charette SJ, Levesque RC.

Genome Biol Evol. 2017 Apr 5. doi: 10.1093/gbe/evx061. [Epub ahead of print]

25.

Phylogenetic analysis of the fish pathogen Aeromonas salmonicida underlines the dichotomy between European and Canadian strains for the salmonicida subspecies.

Vincent AT, Charette SJ.

J Fish Dis. 2017 Sep;40(9):1241-1247. doi: 10.1111/jfd.12595. Epub 2017 Jan 20. No abstract available.

PMID:
28105757
26.

The mosaic architecture of Aeromonas salmonicida subsp. salmonicida pAsa4 plasmid and its consequences on antibiotic resistance.

Tanaka KH, Vincent AT, Trudel MV, Paquet VE, Frenette M, Charette SJ.

PeerJ. 2016 Oct 27;4:e2595. eCollection 2016.

27.

Diversity of antibiotic-resistance genes in Canadian isolates of Aeromonas salmonicida subsp. salmonicida: dominance of pSN254b and discovery of pAsa8.

Trudel MV, Vincent AT, Attéré SA, Labbé M, Derome N, Culley AI, Charette SJ.

Sci Rep. 2016 Oct 18;6:35617. doi: 10.1038/srep35617.

28.

Antibiotic resistance due to an unusual ColE1-type replicon plasmid in Aeromonas salmonicida.

Vincent AT, Emond-Rheault JG, Barbeau X, Attéré SA, Frenette M, Lagüe P, Charette SJ.

Microbiology. 2016 Jun;162(6):942-953. doi: 10.1099/mic.0.000286. Epub 2016 Mar 30.

PMID:
27028891
29.

Next-generation sequencing (NGS) in the microbiological world: How to make the most of your money.

Vincent AT, Derome N, Boyle B, Culley AI, Charette SJ.

J Microbiol Methods. 2017 Jul;138:60-71. doi: 10.1016/j.mimet.2016.02.016. Epub 2016 Mar 16. Review.

PMID:
26995332
30.

Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida.

Vincent AT, Trudel MV, Freschi L, Nagar V, Gagné-Thivierge C, Levesque RC, Charette SJ.

BMC Genomics. 2016 Jan 12;17:44. doi: 10.1186/s12864-016-2381-3.

31.

Diversity and Homogeneity among Small Plasmids of Aeromonas salmonicida subsp. salmonicida Linked with Geographical Origin.

Attéré SA, Vincent AT, Trudel MV, Chanut R, Charette SJ.

Front Microbiol. 2015 Nov 23;6:1274. doi: 10.3389/fmicb.2015.01274. eCollection 2015.

32.

Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae).

Lemieux C, Vincent AT, Labarre A, Otis C, Turmel M.

BMC Evol Biol. 2015 Dec 1;15:264. doi: 10.1186/s12862-015-0544-5.

33.

AsaGEI2b: a new variant of a genomic island identified in the Aeromonas salmonicida subsp. salmonicida JF3224 strain isolated from a wild fish in Switzerland.

Emond-Rheault JG, Vincent AT, Trudel MV, Frey J, Frenette M, Charette SJ.

FEMS Microbiol Lett. 2015 Jul;362(13):fnv093. doi: 10.1093/femsle/fnv093. Epub 2015 Jun 5.

34.

Who qualifies to be a bioinformatician?

Vincent AT, Charette SJ.

Front Genet. 2015 Apr 24;6:164. doi: 10.3389/fgene.2015.00164. eCollection 2015. No abstract available.

35.

Draft genome sequences of two Aeromonas salmonicida subsp. salmonicida isolates harboring plasmids conferring antibiotic resistance.

Vincent AT, Tanaka KH, Trudel MV, Frenette M, Derome N, Charette SJ.

FEMS Microbiol Lett. 2015 Feb;362(4). doi: 10.1093/femsle/fnv002. Epub 2015 Jan 13.

PMID:
25724776
36.

Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins.

Emond-Rheault JG, Vincent AT, Trudel MV, Brochu F, Boyle B, Tanaka KH, Attéré SA, Jubinville É, Loch TP, Winters AD, Faisal M, Frenette M, Derome N, Charette SJ.

Vet Microbiol. 2015 Jan 30;175(1):68-76. doi: 10.1016/j.vetmic.2014.11.014. Epub 2014 Nov 22.

PMID:
25480167
37.

Improvement in the DNA sequencing of genomes bearing long repeated elements.

Vincent AT, Boyle B, Derome N, Charette SJ.

J Microbiol Methods. 2014 Dec;107:186-8.

PMID:
25447886
38.

Detection of variants of the pRAS3, pAB5S9, and pSN254 plasmids in Aeromonas salmonicida subsp. salmonicida: multidrug resistance, interspecies exchanges, and plasmid reshaping.

Vincent AT, Trudel MV, Paquet VE, Boyle B, Tanaka KH, Dallaire-Dufresne S, Daher RK, Frenette M, Derome N, Charette SJ.

Antimicrob Agents Chemother. 2014 Dec;58(12):7367-74. doi: 10.1128/AAC.03730-14. Epub 2014 Sep 29.

39.

Freedom in bioinformatics.

Vincent AT, Charette SJ.

Front Genet. 2014 Jul 31;5:259. doi: 10.3389/fgene.2014.00259. eCollection 2014. No abstract available.

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