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Items: 1 to 50 of 103

1.

Liquid biopsies for omics-based analysis in sentinel mussels.

Caza F, Joly de Boissel PG, Villemur R, Betoulle S, St-Pierre Y.

PLoS One. 2019 Oct 3;14(10):e0223525. doi: 10.1371/journal.pone.0223525. eCollection 2019.

3.

Dynamics of a methanol-fed marine denitrifying biofilm: 2-impact of environmental changes on the microbial community.

Villemur R, Payette G, Geoffroy V, Mauffrey F, Martineau C.

PeerJ. 2019 Aug 13;7:e7467. doi: 10.7717/peerj.7467. eCollection 2019.

4.

Fecal contamination of storm sewers: Evaluating wastewater micropollutants, human-specific Bacteroides 16S rRNA, and mitochondrial DNA genetic markers as alternative indicators of sewer cross connections.

Hajj-Mohamad M, Hachad M, Deschamps G, Sauvé S, Villemur R, Blais MA, Prévost M, Dorner S.

Sci Total Environ. 2019 Apr 1;659:548-560. doi: 10.1016/j.scitotenv.2018.12.378. Epub 2018 Dec 27.

PMID:
31096384
5.

Strain-level genetic diversity of Methylophaga nitratireducenticrescens confers plasticity to denitrification capacity in a methylotrophic marine denitrifying biofilm.

Geoffroy V, Payette G, Mauffrey F, Lestin L, Constant P, Villemur R.

PeerJ. 2018 Apr 23;6:e4679. doi: 10.7717/peerj.4679. eCollection 2018.

6.

Denitrifying metabolism of the methylotrophic marine bacterium Methylophaga nitratireducenticrescens strain JAM1.

Mauffrey F, Cucaita A, Constant P, Villemur R.

PeerJ. 2017 Nov 28;5:e4098. doi: 10.7717/peerj.4098. eCollection 2017.

7.

Detection of virulence, antibiotic resistance and toxin (VAT) genes in Campylobacter species using newly developed multiplex PCR assays.

Laprade N, Cloutier M, Lapen DR, Topp E, Wilkes G, Villemur R, Khan IU.

J Microbiol Methods. 2016 May;124:41-7. doi: 10.1016/j.mimet.2016.03.009. Epub 2016 Mar 21.

PMID:
27012738
8.

Development and evaluation of multiplex PCR assays for rapid detection of virulence-associated genes in Arcobacter species.

Whiteduck-Léveillée J, Cloutier M, Topp E, Lapen DR, Talbot G, Villemur R, Khan IU.

J Microbiol Methods. 2016 Feb;121:59-65. doi: 10.1016/j.mimet.2015.12.017. Epub 2016 Jan 6.

PMID:
26769558
9.
10.

Identification, characterization and description of Arcobacter faecis sp. nov., isolated from a human waste septic tank.

Whiteduck-Léveillée K, Whiteduck-Léveillée J, Cloutier M, Tambong JT, Xu R, Topp E, Arts MT, Chao J, Adam Z, Lévesque CA, Lapen DR, Villemur R, Khan IU.

Syst Appl Microbiol. 2016 Mar;39(2):93-9. doi: 10.1016/j.syapm.2015.12.002. Epub 2015 Dec 13.

PMID:
26723853
11.

Comparative Analysis of Denitrifying Activities of Hyphomicrobium nitrativorans, Hyphomicrobium denitrificans, and Hyphomicrobium zavarzinii.

Martineau C, Mauffrey F, Villemur R.

Appl Environ Microbiol. 2015 Aug;81(15):5003-14. doi: 10.1128/AEM.00848-15. Epub 2015 May 15.

12.

Arcobacter lanthieri sp. nov., isolated from pig and dairy cattle manure.

Whiteduck-Léveillée K, Whiteduck-Léveillée J, Cloutier M, Tambong JT, Xu R, Topp E, Arts MT, Chao J, Adam Z, André Lévesque C, Lapen DR, Villemur R, Talbot G, Khan IU.

Int J Syst Evol Microbiol. 2015 Aug;65(8):2709-16. doi: 10.1099/ijs.0.000318. Epub 2015 May 14.

PMID:
25977280
13.

Development of four-stage moving bed biofilm reactor train with a pre-denitrification configuration for the removal of thiocyanate and cyanate.

Villemur R, Juteau P, Bougie V, Ménard J, Déziel E.

Bioresour Technol. 2015 Apr;181:254-62. doi: 10.1016/j.biortech.2015.01.051. Epub 2015 Jan 20.

PMID:
25656870
14.

An environmental survey of surface waters using mitochondrial DNA from human, bovine and porcine origin as fecal source tracking markers.

Villemur R, Imbeau M, Vuong MN, Masson L, Payment P.

Water Res. 2015 Feb 1;69:143-153. doi: 10.1016/j.watres.2014.10.063. Epub 2014 Nov 8.

PMID:
25463935
15.
16.

Biodegradation of endocrine disruptors in solid-liquid two-phase partitioning systems by enrichment cultures.

Villemur R, Dos Santos SC, Ouellette J, Juteau P, Lépine F, Déziel E.

Appl Environ Microbiol. 2013 Aug;79(15):4701-11. doi: 10.1128/AEM.01239-13. Epub 2013 May 31.

17.

Hyphomicrobium nitrativorans sp. nov., isolated from the biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome.

Martineau C, Villeneuve C, Mauffrey F, Villemur R.

Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3777-81. doi: 10.1099/ijs.0.048124-0. Epub 2013 May 10.

PMID:
23667138
18.

A new framework to accurately quantify soil bacterial community diversity from DGGE.

Lalande J, Villemur R, Deschênes L.

Microb Ecol. 2013 Oct;66(3):647-58. doi: 10.1007/s00248-013-0230-3. Epub 2013 May 3.

PMID:
23640274
19.

The pentachlorophenol-dehalogenating Desulfitobacterium hafniense strain PCP-1.

Villemur R.

Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120319. doi: 10.1098/rstb.2012.0319. Print 2013 Apr 19. Review.

20.

Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems.

Auffret M, Yergeau É, Pilote A, Proulx É, Proulx D, Greer CW, Vandenberg G, Villemur R.

FEMS Microbiol Ecol. 2013 May;84(2):235-47. doi: 10.1111/1574-6941.12053. Epub 2013 Jan 8.

21.

Methylophaga nitratireducenticrescens sp. nov. and Methylophaga frappieri sp. nov., isolated from the biofilm of the methanol-fed denitrification system treating the seawater at the Montreal Biodome.

Villeneuve C, Martineau C, Mauffrey F, Villemur R.

Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):2216-22. doi: 10.1099/ijs.0.044545-0. Epub 2012 Nov 12.

PMID:
23148104
22.

Fecal source tracking in water using a mitochondrial DNA microarray.

Vuong NM, Villemur R, Payment P, Brousseau R, Topp E, Masson L.

Water Res. 2013 Jan 1;47(1):16-30. doi: 10.1016/j.watres.2012.09.011. Epub 2012 Oct 4.

PMID:
23084117
23.

Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7.

Villeneuve C, Martineau C, Mauffrey F, Villemur R.

J Bacteriol. 2012 Aug;194(15):4126-7. doi: 10.1128/JB.00726-12. Erratum in: J Bacteriol. 2012 Oct;194(19):5494.

24.

A liquid chromatography - mass spectrometry method to measure ¹³C-isotope enrichment for DNA stable-isotope probing.

Auclair J, Lépine F, Villemur R.

Can J Microbiol. 2012 Mar;58(3):287-92. doi: 10.1139/w11-133. Epub 2012 Feb 22.

PMID:
22356592
25.

Establishment of a real-time PCR method for quantification of geosmin-producing Streptomyces spp. in recirculating aquaculture systems.

Auffret M, Pilote A, Proulx E, Proulx D, Vandenberg G, Villemur R.

Water Res. 2011 Dec 15;45(20):6753-62. doi: 10.1016/j.watres.2011.10.020. Epub 2011 Oct 24.

PMID:
22060964
26.

Functional diversity in the denitrifying biofilm of the methanol-fed marine denitrification system at the Montreal Biodome.

Auclair J, Parent S, Villemur R.

Microb Ecol. 2012 May;63(4):726-35. doi: 10.1007/s00248-011-9960-2. Epub 2011 Oct 18.

PMID:
22006549
27.

Isolation of estrogen-degrading bacteria from an activated sludge bioreactor treating swine waste, including a strain that converts estrone to β-estradiol.

Isabelle M, Villemur R, Juteau P, Lépine F.

Can J Microbiol. 2011 Jul;57(7):559-68. doi: 10.1139/W11-051. Epub 2011 Jul 19.

PMID:
21770814
28.

Quantitative analysis of the relative transcript levels of four chlorophenol reductive dehalogenase genes in Desulfitobacterium hafniense PCP-1 exposed to chlorophenols.

Bisaillon A, Beaudet R, Lépine F, Villemur R.

Appl Environ Microbiol. 2011 Sep;77(17):6261-4. doi: 10.1128/AEM.00390-11. Epub 2011 Jul 8.

29.

Composition of the bacterial biota in slime developed in two machines at a Canadian paper mill.

Disnard J, Beaulieu C, Villemur R.

Can J Microbiol. 2011 Feb;57(2):91-104. doi: 10.1139/w10-109.

PMID:
21326351
30.

Identification and characterization of a novel CprA reductive dehalogenase specific to highly chlorinated phenols from Desulfitobacterium hafniense strain PCP-1.

Bisaillon A, Beaudet R, Lépine F, Déziel E, Villemur R.

Appl Environ Microbiol. 2010 Nov;76(22):7536-40. doi: 10.1128/AEM.01362-10. Epub 2010 Sep 24.

31.

Dissimilatory reduction of nitrate in seawater by a Methylophaga strain containing two highly divergent narG sequences.

Auclair J, Lépine F, Parent S, Villemur R.

ISME J. 2010 Oct;4(10):1302-13. doi: 10.1038/ismej.2010.47. Epub 2010 Apr 15.

PMID:
20393572
32.

Culture-independent characterization of archaeal biodiversity in swine confinement building bioaerosols.

Nehmé B, Gilbert Y, Létourneau V, Forster RJ, Veillette M, Villemur R, Duchaine C.

Appl Environ Microbiol. 2009 Sep;75(17):5445-50. doi: 10.1128/AEM.00726-09. Epub 2009 Jun 26.

33.

Inhibition of biological phosphorus removal in a sequencing moving bed biofilm reactor in seawater.

Vallet B, Labelle MA, Rieger L, Bigras S, Parent S, Juteau P, Villemur R, Comeau Y.

Water Sci Technol. 2009;59(6):1101-10. doi: 10.2166/wst.2009.047.

PMID:
19342805
34.

Universal mitochondrial PCR combined with species-specific dot-blot assay as a source-tracking method of human, bovine, chicken, ovine, and porcine in fecal-contaminated surface water.

Kortbaoui R, Locas A, Imbeau M, Payment P, Villemur R.

Water Res. 2009 Apr;43(7):2002-10. doi: 10.1016/j.watres.2009.01.030. Epub 2009 Feb 10.

PMID:
19249072
35.

Tropospheric H(2) budget and the response of its soil uptake under the changing environment.

Constant P, Poissant L, Villemur R.

Sci Total Environ. 2009 Mar 1;407(6):1809-23. doi: 10.1016/j.scitotenv.2008.10.064. Epub 2009 Jan 19. Review.

PMID:
19155054
36.

Bacterial diversity of a consortium degrading high-molecular-weight polycyclic aromatic hydrocarbons in a two-liquid phase biosystem.

Lafortune I, Juteau P, Déziel E, Lépine F, Beaudet R, Villemur R.

Microb Ecol. 2009 Apr;57(3):455-68. doi: 10.1007/s00248-008-9417-4. Epub 2008 Jul 10.

PMID:
18615233
37.

Isolation of Streptomyces sp. PCB7, the first microorganism demonstrating high-affinity uptake of tropospheric H2.

Constant P, Poissant L, Villemur R.

ISME J. 2008 Oct;2(10):1066-76. doi: 10.1038/ismej.2008.59. Epub 2008 Jun 12.

PMID:
18548118
38.

Microeukaryote diversity in a marine methanol-fed fluidized denitrification system.

Laurin V, Labbé N, Parent S, Juteau P, Villemur R.

Microb Ecol. 2008 Nov;56(4):637-48. doi: 10.1007/s00248-008-9383-x. Epub 2008 May 9.

PMID:
18465167
39.
40.

Microbiological community structure of the biofilm of a methanol-fed, marine denitrification system, and identification of the methanol-utilizing microorganisms.

Labbé N, Laurin V, Juteau P, Parent S, Villemur R.

Microb Ecol. 2007 May;53(4):621-30. Epub 2007 Mar 30.

PMID:
17394042
41.

The Desulfitobacterium genus.

Villemur R, Lanthier M, Beaudet R, Lépine F.

FEMS Microbiol Rev. 2006 Sep;30(5):706-33. Review.

43.

Occurrence and expression of crdA and cprA5 encoding chloroaromatic reductive dehalogenases in Desulfitobacterium strains.

Gauthier A, Beaudet R, Lépine F, Juteau P, Villemur R.

Can J Microbiol. 2006 Jan;52(1):47-55.

PMID:
16541158
44.

Design optimization of a self-cleaning moving-bed bioreactor for seawater denitrification.

Dupla M, Comeau Y, Parent S, Villemur R, Jolicoeur M.

Water Res. 2006 Jan;40(2):249-58. Epub 2005 Dec 15.

PMID:
16343585
45.

Molecular analysis of Desulfitobacterium frappieri pcp-1 involved in reductive dehalogenation of pentachlorophenol.

Villemur R, Beaudet R, Lanthier M, Gauthier A, Boyer A, Thibodeau J, Lépine F, Duguay M, Pagé-Bélanger R.

Water Sci Technol. 2005;52(1-2):101-6.

PMID:
16180415
46.

Seawater denitrification in a closed mesocosm by a submerged moving bed biofilm reactor.

Labelle MA, Juteau P, Jolicoeur M, Villemur R, Parent S, Comeau Y.

Water Res. 2005 Sep;39(14):3409-17.

PMID:
16023699
47.
48.

Use of eukaryotic mitochondrial DNA to differentiate human, bovine, porcine and ovine sources in fecally contaminated surface water.

Martellini A, Payment P, Villemur R.

Water Res. 2005 Feb;39(4):541-8. Epub 2004 Dec 24.

PMID:
15707626
49.
50.

Cryptanaerobacter phenolicus gen. nov., sp. nov., an anaerobe that transforms phenol into benzoate via 4-hydroxybenzoate.

Juteau P, Côté V, Duckett MF, Beaudet R, Lépine F, Villemur R, Bisaillon JG.

Int J Syst Evol Microbiol. 2005 Jan;55(Pt 1):245-50.

PMID:
15653882

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