Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 66

1.

Long-fragment targeted capture for long-read sequencing of plastomes.

Bethune K, Mariac C, Couderc M, Scarcelli N, Santoni S, Ardisson M, Martin JF, Montúfar R, Klein V, Sabot F, Vigouroux Y, Couvreur TLP.

Appl Plant Sci. 2019 May 8;7(5):e1243. doi: 10.1002/aps3.1243. eCollection 2019 May.

2.

Yam genomics supports West Africa as a major cradle of crop domestication.

Scarcelli N, Cubry P, Akakpo R, Thuillet AC, Obidiegwu J, Baco MN, Otoo E, Sonké B, Dansi A, Djedatin G, Mariac C, Couderc M, Causse S, Alix K, Chaïr H, François O, Vigouroux Y.

Sci Adv. 2019 May 1;5(5):eaaw1947. doi: 10.1126/sciadv.aaw1947. eCollection 2019 May.

3.

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits.

Varshney RK, Thudi M, Roorkiwal M, He W, Upadhyaya HD, Yang W, Bajaj P, Cubry P, Rathore A, Jian J, Doddamani D, Khan AW, Garg V, Chitikineni A, Xu D, Gaur PM, Singh NP, Chaturvedi SK, Nadigatla GVPR, Krishnamurthy L, Dixit GP, Fikre A, Kimurto PK, Sreeman SM, Bharadwaj C, Tripathi S, Wang J, Lee SH, Edwards D, Polavarapu KKB, Penmetsa RV, Crossa J, Nguyen HT, Siddique KHM, Colmer TD, Sutton T, von Wettberg E, Vigouroux Y, Xu X, Liu X.

Nat Genet. 2019 May;51(5):857-864. doi: 10.1038/s41588-019-0401-3. Epub 2019 Apr 29.

PMID:
31036963
4.

Adaptive Introgression: An Untapped Evolutionary Mechanism for Crop Adaptation.

Burgarella C, Barnaud A, Kane NA, Jankowski F, Scarcelli N, Billot C, Vigouroux Y, Berthouly-Salazar C.

Front Plant Sci. 2019 Feb 1;10:4. doi: 10.3389/fpls.2019.00004. eCollection 2019. Review.

5.

Response to early drought stress and identification of QTLs controlling biomass production under drought in pearl millet.

Debieu M, Sine B, Passot S, Grondin A, Akata E, Gangashetty P, Vadez V, Gantet P, Foncéka D, Cournac L, Hash CT, Kane NA, Vigouroux Y, Laplaze L.

PLoS One. 2018 Oct 25;13(10):e0201635. doi: 10.1371/journal.pone.0201635. eCollection 2018.

6.

McSwan: A joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes.

Tournebize R, Poncet V, Jakobsson M, Vigouroux Y, Manel S.

Mol Ecol Resour. 2019 Jan;19(1):283-295. doi: 10.1111/1755-0998.12957. Epub 2018 Nov 22.

PMID:
30358170
7.

Metabarcoding by capture using a single COI probe (MCSP) to identify and quantify fish species in ichthyoplankton swarms.

Mariac C, Vigouroux Y, Duponchelle F, García-Dávila C, Nunez J, Desmarais E, Renno JF.

PLoS One. 2018 Sep 12;13(9):e0202976. doi: 10.1371/journal.pone.0202976. eCollection 2018.

8.

A western Sahara centre of domestication inferred from pearl millet genomes.

Burgarella C, Cubry P, Kane NA, Varshney RK, Mariac C, Liu X, Shi C, Thudi M, Couderc M, Xu X, Chitikineni A, Scarcelli N, Barnaud A, Rhoné B, Dupuy C, François O, Berthouly-Salazar C, Vigouroux Y.

Nat Ecol Evol. 2018 Sep;2(9):1377-1380. doi: 10.1038/s41559-018-0643-y. Epub 2018 Aug 6.

PMID:
30082736
9.

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.

Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B, Burgarella C, Dupuy C, Larmande P, Wincker P, François O, Sabot F, Vigouroux Y.

Curr Biol. 2018 Jul 23;28(14):2274-2282.e6. doi: 10.1016/j.cub.2018.05.066. Epub 2018 Jul 5.

10.

The Empirical Distribution of Singletons for Geographic Samples of DNA Sequences.

Cubry P, Vigouroux Y, François O.

Front Genet. 2017 Sep 29;8:139. doi: 10.3389/fgene.2017.00139. eCollection 2017.

11.

Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes.

Akakpo R, Scarcelli N, Chaïr H, Dansi A, Djedatin G, Thuillet AC, Rhoné B, François O, Alix K, Vigouroux Y.

BMC Genomics. 2017 Oct 12;18(1):782. doi: 10.1186/s12864-017-4143-2.

12.

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X.

Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18.

13.

Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda.

Tournebize R, Manel S, Vigouroux Y, Munoz F, de Kochko A, Poncet V.

PLoS One. 2017 Aug 18;12(8):e0183412. doi: 10.1371/journal.pone.0183412. eCollection 2017.

14.

Pearl Millet Genetic Traits Shape Rhizobacterial Diversity and Modulate Rhizosphere Aggregation.

Ndour PMS, Gueye M, Barakat M, Ortet P, Bertrand-Huleux M, Pablo AL, Dezette D, Chapuis-Lardy L, Assigbetsé K, Kane NA, Vigouroux Y, Achouak W, Ndoye I, Heulin T, Cournac L.

Front Plant Sci. 2017 Jul 27;8:1288. doi: 10.3389/fpls.2017.01288. eCollection 2017.

15.

The Discovery of Wild Date Palms in Oman Reveals a Complex Domestication History Involving Centers in the Middle East and Africa.

Gros-Balthazard M, Galimberti M, Kousathanas A, Newton C, Ivorra S, Paradis L, Vigouroux Y, Carter R, Tengberg M, Battesti V, Santoni S, Falquet L, Pintaud JC, Terral JF, Wegmann D.

Curr Biol. 2017 Jul 24;27(14):2211-2218.e8. doi: 10.1016/j.cub.2017.06.045. Epub 2017 Jul 14.

16.

Human management and hybridization shape treegourd fruits in the Brazilian Amazon Basin.

Ambrósio Moreira P, Mariac C, Zekraoui L, Couderc M, Rodrigues DP, Clement CR, Vigouroux Y.

Evol Appl. 2017 May 4;10(6):577-589. doi: 10.1111/eva.12474. eCollection 2017 Jul.

17.

New Genetic Insights into Pearl Millet Diversity As Revealed by Characterization of Early- and Late-Flowering Landraces from Senegal.

Diack O, Kane NA, Berthouly-Salazar C, Gueye MC, Diop BM, Fofana A, Sy O, Tall H, Zekraoui L, Piquet M, Couderc M, Vigouroux Y, Diouf D, Barnaud A.

Front Plant Sci. 2017 May 17;8:818. doi: 10.3389/fpls.2017.00818. eCollection 2017.

18.

Structure of sweet potato (Ipomoea batatas) diversity in West Africa covaries with a climatic gradient.

Glato K, Aidam A, Kane NA, Bassirou D, Couderc M, Zekraoui L, Scarcelli N, Barnaud A, Vigouroux Y.

PLoS One. 2017 May 26;12(5):e0177697. doi: 10.1371/journal.pone.0177697. eCollection 2017.

19.

Evolutionary forces affecting synonymous variations in plant genomes.

Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S.

PLoS Genet. 2017 May 22;13(5):e1006799. doi: 10.1371/journal.pgen.1006799. eCollection 2017 May.

20.

Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae): Heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity.

Moussouni S, Pintaud JC, Vigouroux Y, Bouguedoura N.

PLoS One. 2017 Apr 14;12(4):e0175232. doi: 10.1371/journal.pone.0175232. eCollection 2017.

21.

Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet.

Ousseini IS, Bakasso Y, Kane NA, Couderc M, Zekraoui L, Mariac C, Manicacci D, Rhoné B, Barnaud A, Berthouly-Salazar C, Assoumane A, Moussa D, Moussa T, Vigouroux Y.

Heredity (Edinb). 2017 Aug;119(2):88-94. doi: 10.1038/hdy.2017.13. Epub 2017 Mar 15.

22.

Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples.

Fustier MA, Brandenburg JT, Boitard S, Lapeyronnie J, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI.

Mol Ecol. 2017 May;26(10):2738-2756. doi: 10.1111/mec.14082. Epub 2017 Mar 29.

PMID:
28256021
23.

No Excess of Cis-Regulatory Variation Associated with Intraspecific Selection in Wild Pearl Millet (Cenchrus americanus).

Rhoné B, Mariac C, Couderc M, Berthouly-Salazar C, Ousseini IS, Vigouroux Y.

Genome Biol Evol. 2017 Feb 1;9(2):388-397. doi: 10.1093/gbe/evx004.

24.

DNA Metabarcoding of Amazonian Ichthyoplankton Swarms.

Maggia ME, Vigouroux Y, Renno JF, Duponchelle F, Desmarais E, Nunez J, García-Dávila C, Carvajal-Vallejos FM, Paradis E, Martin JF, Mariac C.

PLoS One. 2017 Jan 17;12(1):e0170009. doi: 10.1371/journal.pone.0170009. eCollection 2017.

25.

Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication.

Moreira PA, Mariac C, Scarcelli N, Couderc M, Rodrigues DP, Clement CR, Vigouroux Y.

Appl Plant Sci. 2016 Oct 18;4(10). pii: apps.1600048. eCollection 2016 Oct.

26.

Genome scan reveals selection acting on genes linked to stress response in wild pearl millet.

Berthouly-Salazar C, Thuillet AC, Rhoné B, Mariac C, Ousseini IS, Couderc M, Tenaillon MI, Vigouroux Y.

Mol Ecol. 2016 Nov;25(21):5500-5512. doi: 10.1111/mec.13859. Epub 2016 Oct 14.

PMID:
27664976
27.

Phylogeography of the genus Podococcus (Palmae/Arecaceae) in Central African rain forests: Climate stability predicts unique genetic diversity.

Faye A, Deblauwe V, Mariac C, Richard D, Sonké B, Vigouroux Y, Couvreur TLP.

Mol Phylogenet Evol. 2016 Dec;105:126-138. doi: 10.1016/j.ympev.2016.08.005. Epub 2016 Aug 10.

PMID:
27521478
28.

Spatial and Temporal Variation in Selection of Genes Associated with Pearl Millet Varietal Quantitative Traits In situ.

Mariac C, Ousseini IS, Alio AK, Jugdé H, Pham JL, Bezançon G, Ronfort J, Descroix L, Vigouroux Y.

Front Genet. 2016 Jul 26;7:130. doi: 10.3389/fgene.2016.00130. eCollection 2016.

29.

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.

Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Péros JP, Labouisse JP, Pham JL, David J, Glémin S, Ruiz M.

Mol Ecol Resour. 2017 May;17(3):565-580. doi: 10.1111/1755-0998.12587. Epub 2016 Aug 29.

PMID:
27487989
30.

Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots.

Passot S, Gnacko F, Moukouanga D, Lucas M, Guyomarc'h S, Ortega BM, Atkinson JA, Belko MN, Bennett MJ, Gantet P, Wells DM, Guédon Y, Vigouroux Y, Verdeil JL, Muller B, Laplaze L.

Front Plant Sci. 2016 Jun 13;7:829. doi: 10.3389/fpls.2016.00829. eCollection 2016.

31.

Genotyping-by-Sequencing SNP Identification for Crops without a Reference Genome: Using Transcriptome Based Mapping as an Alternative Strategy.

Berthouly-Salazar C, Mariac C, Couderc M, Pouzadoux J, Floc'h JB, Vigouroux Y.

Front Plant Sci. 2016 Jun 15;7:777. doi: 10.3389/fpls.2016.00777. eCollection 2016.

32.

miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species.

Ta KN, Sabot F, Adam H, Vigouroux Y, De Mita S, Ghesquière A, Do NV, Gantet P, Jouannic S.

Rice (N Y). 2016 Dec;9(1):10. doi: 10.1186/s12284-016-0082-9. Epub 2016 Mar 12.

33.

Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?

Scarcelli N, Mariac C, Couvreur TL, Faye A, Richard D, Sabot F, Berthouly-Salazar C, Vigouroux Y.

Mol Ecol Resour. 2016 Mar;16(2):434-45. doi: 10.1111/1755-0998.12462. Epub 2015 Sep 20.

PMID:
26388536
34.

An extensive analysis of the African rice genetic diversity through a global genotyping.

Orjuela J, Sabot F, Chéron S, Vigouroux Y, Adam H, Chrestin H, Sanni K, Lorieux M, Ghesquière A.

Theor Appl Genet. 2014 Oct;127(10):2211-23. doi: 10.1007/s00122-014-2374-z. Epub 2014 Aug 15.

PMID:
25119871
35.

Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies.

Mariac C, Scarcelli N, Pouzadou J, Barnaud A, Billot C, Faye A, Kougbeadjo A, Maillol V, Martin G, Sabot F, Santoni S, Vigouroux Y, Couvreur TL.

Mol Ecol Resour. 2014 Nov;14(6):1103-13. doi: 10.1111/1755-0998.12258. Epub 2014 Apr 23.

PMID:
24690362
36.

Association studies including genotype by environment interactions: prospects and limits.

Saïdou AA, Thuillet AC, Couderc M, Mariac C, Vigouroux Y.

BMC Genet. 2014 Jan 6;15:3. doi: 10.1186/1471-2156-15-3.

37.

Clonal diversity and estimation of relative clone age: application to agrobiodiversity of yam (Dioscorea rotundata).

Scarcelli N, Couderc M, Baco MN, Egah J, Vigouroux Y.

BMC Plant Biol. 2013 Nov 13;13:178. doi: 10.1186/1471-2229-13-178.

38.

Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet.

Saïdou AA, Clotault J, Couderc M, Mariac C, Devos KM, Thuillet AC, Amoukou IA, Vigouroux Y.

Theor Appl Genet. 2014 Jan;127(1):19-32. doi: 10.1007/s00122-013-2197-3. Epub 2013 Oct 10.

PMID:
24114050
39.

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations.

De Mita S, Thuillet AC, Gay L, Ahmadi N, Manel S, Ronfort J, Vigouroux Y.

Mol Ecol. 2013 Mar;22(5):1383-99. doi: 10.1111/mec.12182. Epub 2013 Jan 7.

PMID:
23294205
40.

Development of nuclear microsatellite markers for the fonio, Digitaria exilis (Poaceae), an understudied West African cereal.

Barnaud A, Vignes H, Risterucci AM, Noyer JL, Pham JL, Blay C, Buiron M, Vigouroux Y, Billot C.

Am J Bot. 2012 Mar;99(3):e105-7. doi: 10.3732/ajb.1100423. Epub 2012 Feb 21.

41.

Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication.

Clotault J, Thuillet AC, Buiron M, De Mita S, Couderc M, Haussmann BI, Mariac C, Vigouroux Y.

Mol Biol Evol. 2012 Apr;29(4):1199-212. doi: 10.1093/molbev/msr287. Epub 2011 Nov 22.

PMID:
22114357
42.

Genetic structure of farmer-managed varieties in clonally-propagated crops.

Scarcelli N, Tostain S, Vigouroux Y, Luong V, Baco MN, Agbangla C, Daïnou O, Pham JL.

Genetica. 2011 Aug;139(8):1055-64. doi: 10.1007/s10709-011-9607-8. Epub 2011 Sep 7.

PMID:
21898046
43.

Biodiversity, evolution and adaptation of cultivated crops.

Vigouroux Y, Barnaud A, Scarcelli N, Thuillet AC.

C R Biol. 2011 May;334(5-6):450-7. doi: 10.1016/j.crvi.2011.03.003. Epub 2011 Apr 30. Review.

PMID:
21640954
44.

A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in monocotyledons.

Scarcelli N, Barnaud A, Eiserhardt W, Treier UA, Seveno M, d'Anfray A, Vigouroux Y, Pintaud JC.

PLoS One. 2011;6(5):e19954. doi: 10.1371/journal.pone.0019954. Epub 2011 May 26.

45.

Selection for earlier flowering crop associated with climatic variations in the Sahel.

Vigouroux Y, Mariac C, De Mita S, Pham JL, Gérard B, Kapran I, Sagnard F, Deu M, Chantereau J, Ali A, Ndjeunga J, Luong V, Thuillet AC, Saïdou AA, Bezançon G.

PLoS One. 2011 May 4;6(5):e19563. doi: 10.1371/journal.pone.0019563.

46.

Divergent expression patterns of miR164 and CUP-SHAPED COTYLEDON genes in palms and other monocots: implication for the evolution of meristem function in angiosperms.

Adam H, Marguerettaz M, Qadri R, Adroher B, Richaud F, Collin M, Thuillet AC, Vigouroux Y, Laufs P, Tregear JW, Jouannic S.

Mol Biol Evol. 2011 Apr;28(4):1439-54. doi: 10.1093/molbev/msq328. Epub 2010 Dec 6.

PMID:
21135149
47.

Genetic basis of pearl millet adaptation along an environmental gradient investigated by a combination of genome scan and association mapping.

Mariac C, Jehin L, Saïdou AA, Thuillet AC, Couderc M, Sire P, Jugdé H, Adam H, Bezançon G, Pham JL, Vigouroux Y.

Mol Ecol. 2011 Jan;20(1):80-91. doi: 10.1111/j.1365-294X.2010.04893.x. Epub 2010 Nov 3.

PMID:
21050293
48.

Spatio-temporal dynamics of genetic diversity in Sorghum bicolor in Niger.

Deu M, Sagnard F, Chantereau J, Calatayud C, Vigouroux Y, Pham JL, Mariac C, Kapran I, Mamadou A, Gérard B, Ndjeunga J, Bezançon G.

Theor Appl Genet. 2010 May;120(7):1301-13. doi: 10.1007/s00122-009-1257-1. Epub 2010 Jan 9.

PMID:
20062963
49.

Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet.

Saïdou AA, Mariac C, Luong V, Pham JL, Bezançon G, Vigouroux Y.

Genetics. 2009 Jul;182(3):899-910. doi: 10.1534/genetics.109.102756. Epub 2009 May 11.

50.

Population structure and genetic diversity of New World maize races assessed by DNA microsatellites.

Vigouroux Y, Glaubitz JC, Matsuoka Y, Goodman MM, Sánchez G J, Doebley J.

Am J Bot. 2008 Oct;95(10):1240-53. doi: 10.3732/ajb.0800097.

Supplemental Content

Loading ...
Support Center