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The quail genome: insights into social behaviour, seasonal biology and infectious disease response.

Morris KM, Hindle MM, Boitard S, Burt DW, Danner AF, Eory L, Forrest HL, Gourichon D, Gros J, Hillier LW, Jaffredo T, Khoury H, Lansford R, Leterrier C, Loudon A, Mason AS, Meddle SL, Minvielle F, Minx P, Pitel F, Seiler JP, Shimmura T, Tomlinson C, Vignal A, Webster RG, Yoshimura T, Warren WC, Smith J.

BMC Biol. 2020 Feb 12;18(1):14. doi: 10.1186/s12915-020-0743-4.


Structure of the intergenic spacers in chicken ribosomal DNA.

Dyomin A, Galkina S, Fillon V, Cauet S, Lopez-Roques C, Rodde N, Klopp C, Vignal A, Sokolovskaya A, Saifitdinova A, Gaginskaya E.

Genet Sel Evol. 2019 Oct 26;51(1):59. doi: 10.1186/s12711-019-0501-7.


Two new structural mutations in the 5' region of the ASIP gene cause diluted feather color phenotypes in Japanese quail.

Robic A, Morisson M, Leroux S, Gourichon D, Vignal A, Thebault N, Fillon V, Minvielle F, Bed'Hom B, Zerjal T, Pitel F.

Genet Sel Evol. 2019 Apr 15;51(1):12. doi: 10.1186/s12711-019-0458-6.


A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes.

Vignal A, Boitard S, Thébault N, Dayo GK, Yapi-Gnaore V, Youssao Abdou Karim I, Berthouly-Salazar C, Pálinkás-Bodzsár N, Guémené D, Thibaud-Nissen F, Warren WC, Tixier-Boichard M, Rognon X.

Mol Ecol Resour. 2019 Jul;19(4):997-1014. doi: 10.1111/1755-0998.13017. Epub 2019 May 5.


Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis).

Henriques D, Parejo M, Vignal A, Wragg D, Wallberg A, Webster MT, Pinto MA.

Evol Appl. 2018 Mar 30;11(8):1270-1282. doi: 10.1111/eva.12623. eCollection 2018 Sep.


Autosomal and Mitochondrial Adaptation Following Admixture: A Case Study on the Honeybees of Reunion Island.

Wragg D, Techer MA, Canale-Tabet K, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Clémencet J, Delatte H, Vignal A.

Genome Biol Evol. 2018 Jan 1;10(1):220-238. doi: 10.1093/gbe/evx247.


Genome-wide scans between two honeybee populations reveal putative signatures of human-mediated selection.

Parejo M, Wragg D, Henriques D, Vignal A, Neuditschko M.

Anim Genet. 2017 Dec;48(6):704-707. doi: 10.1111/age.12599. Epub 2017 Sep 4.


Deciphering mechanisms underlying the genetic variation of general production and liver quality traits in the overfed mule duck by pQTL analyses.

François Y, Vignal A, Molette C, Marty-Gasset N, Davail S, Liaubet L, Marie-Etancelin C.

Genet Sel Evol. 2017 Apr 19;49(1):38. doi: 10.1186/s12711-017-0313-6.


A New Chicken Genome Assembly Provides Insight into Avian Genome Structure.

Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, Abrahamsen M, Pyrkosz AB, Morisson M, Fillon V, Vignal A, Chow W, Howe K, Fulton JE, Miller MM, Lovell P, Mello CV, Wirthlin M, Mason AS, Kuo R, Burt DW, Dodgson JB, Cheng HH.

G3 (Bethesda). 2017 Jan 5;7(1):109-117. doi: 10.1534/g3.116.035923.


Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly.

Wragg D, Marti-Marimon M, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Vignal A.

Sci Rep. 2016 Jun 3;6:27168. doi: 10.1038/srep27168.


Species difference in ANP32A underlies influenza A virus polymerase host restriction.

Long JS, Giotis ES, Moncorgé O, Frise R, Mistry B, James J, Morisson M, Iqbal M, Vignal A, Skinner MA, Barclay WS.

Nature. 2016 Jan 7;529(7584):101-4. doi: 10.1038/nature16474.


GWAS analyses reveal QTL in egg layers that differ in response to diet differences.

Romé H, Varenne A, Hérault F, Chapuis H, Alleno C, Dehais P, Vignal A, Burlot T, Le Roy P.

Genet Sel Evol. 2015 Oct 19;47:83. doi: 10.1186/s12711-015-0160-2.


A medium density genetic map and QTL for behavioral and production traits in Japanese quail.

Recoquillay J, Pitel F, Arnould C, Leroux S, Dehais P, Moréno C, Calandreau L, Bertin A, Gourichon D, Bouchez O, Vignal A, Fariello MI, Minvielle F, Beaumont C, Leterrier C, Le Bihan-Duval E.

BMC Genomics. 2015 Jan 22;16:10. doi: 10.1186/s12864-014-1210-9.


Mapping and genotypic analysis of the NK-lysin gene in chicken.

Lee MO, Yang E, Morisson M, Vignal A, Huang YZ, Cheng HH, Muir WM, Lamont SJ, Lillehoj HS, Lee SH, Womack JE.

Genet Sel Evol. 2014 Jul 7;46:43. doi: 10.1186/1297-9686-46-43.


Mule duck "foie gras" shows different metabolic states according to its quality phenotype by using a proteomic approach.

François Y, Marie-Etancelin C, Vignal A, Viala D, Davail S, Molette C.

J Agric Food Chem. 2014 Jul 23;62(29):7140-50. doi: 10.1021/jf5006963. Epub 2014 Jul 9.


Transcriptome-wide investigation of genomic imprinting in chicken.

Frésard L, Leroux S, Servin B, Gourichon D, Dehais P, Cristobal MS, Marsaud N, Vignoles F, Bed'hom B, Coville JL, Hormozdiari F, Beaumont C, Zerjal T, Vignal A, Morisson M, Lagarrigue S, Pitel F.

Nucleic Acids Res. 2014 Apr;42(6):3768-82. doi: 10.1093/nar/gkt1390. Epub 2014 Jan 21.


Evidence of phenotypic and genetic relationships between sociality, emotional reactivity and production traits in Japanese quail.

Recoquillay J, Leterrier C, Calandreau L, Bertin A, Pitel F, Gourichon D, Vignal A, Beaumont C, Le Bihan-Duval E, Arnould C.

PLoS One. 2013 Dec 4;8(12):e82157. doi: 10.1371/journal.pone.0082157. eCollection 2013.


The duck genome and transcriptome provide insight into an avian influenza virus reservoir species.

Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, Fairley S, Magor KE, Du Z, Hu X, Goodman L, Tafer H, Vignal A, Lee T, Kim KW, Sheng Z, An Y, Searle S, Herrero J, Groenen MAM, Crooijmans RPMA, Faraut T, Cai Q, Webster RG, Aldridge JR, Warren WC, Bartschat S, Kehr S, Marz M, Stadler PF, Smith J, Kraus RHS, Zhao Y, Ren L, Fei J, Morisson M, Kaiser P, Griffin DK, Rao M, Pitel F, Wang J, Li N.

Nat Genet. 2013 Jul;45(7):776-783. doi: 10.1038/ng.2657. Epub 2013 Jun 9.


Detection of QTL controlling metabolism, meat quality, and liver quality traits of the overfed interspecific hybrid mule duck.

Kileh-Wais M, Elsen JM, Vignal A, Feves K, Vignoles F, Fernandez X, Manse H, Davail S, André JM, Bastianelli D, Bonnal L, Filangi O, Baéza E, Guéméné D, Genêt C, Bernadet MD, Dubos F, Marie-Etancelin C.

J Anim Sci. 2013 Feb;91(2):588-604. doi: 10.2527/jas.2012-5411. Epub 2012 Nov 12.


Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail.

Frésard L, Leroux S, Dehais P, Servin B, Gilbert H, Bouchez O, Klopp C, Cabau C, Vignoles F, Feve K, Ricros A, Gourichon D, Diot C, Richard S, Leterrier C, Beaumont C, Vignal A, Minvielle F, Pitel F.

BMC Genomics. 2012 Oct 15;13:551. doi: 10.1186/1471-2164-13-551.


A duck RH panel and its potential for assisting NGS genome assembly.

Rao M, Morisson M, Faraut T, Bardes S, Fève K, Labarthe E, Fillon V, Huang Y, Li N, Vignal A.

BMC Genomics. 2012 Sep 28;13:513. doi: 10.1186/1471-2164-13-513.


Epilepsy caused by an abnormal alternative splicing with dosage effect of the SV2A gene in a chicken model.

Douaud M, Feve K, Pituello F, Gourichon D, Boitard S, Leguern E, Coquerelle G, Vieaud A, Batini C, Naquet R, Vignal A, Tixier-Boichard M, Pitel F.

PLoS One. 2011;6(10):e26932. doi: 10.1371/journal.pone.0026932. Epub 2011 Oct 27.


Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos).

Kraus RH, Kerstens HH, Van Hooft P, Crooijmans RP, Van Der Poel JJ, Elmberg J, Vignal A, Huang Y, Li N, Prins HH, Groenen MA.

BMC Genomics. 2011 Mar 16;12:150. doi: 10.1186/1471-2164-12-150.


New QTL for resistance to Salmonella carrier-state identified on fowl microchromosomes.

Calenge F, Vignal A, Demars J, Fève K, Menanteau P, Velge P, Beaumont C.

Mol Genet Genomics. 2011 Mar;285(3):237-43. doi: 10.1007/s00438-011-0600-9. Epub 2011 Jan 30.


Integrative mapping analysis of chicken microchromosome 16 organization.

Solinhac R, Leroux S, Galkina S, Chazara O, Feve K, Vignoles F, Morisson M, Derjusheva S, Bed'hom B, Vignal A, Fillon V, Pitel F.

BMC Genomics. 2010 Nov 4;11:616. doi: 10.1186/1471-2164-11-616.


Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencing.

Leroux S, Feve K, Vignoles F, Bouchez O, Klopp C, Noirot C, Gourichon D, Richard S, Leterrier C, Beaumont C, Minvielle F, Vignal A, Pitel F.

BMC Res Notes. 2010 Jul 28;3:214. doi: 10.1186/1756-0500-3-214.


Genetic control of resistance to salmonellosis and to Salmonella carrier-state in fowl: a review.

Calenge F, Kaiser P, Vignal A, Beaumont C.

Genet Sel Evol. 2010 Apr 29;42:11. doi: 10.1186/1297-9686-42-11. Review.


Mapping main, epistatic and sex-specific QTL for body composition in a chicken population divergently selected for low or high growth rate.

Ankra-Badu GA, Shriner D, Le Bihan-Duval E, Mignon-Grasteau S, Pitel F, Beaumont C, Duclos MJ, Simon J, Porter TE, Vignal A, Cogburn LA, Allison DB, Yi N, Aggrey SE.

BMC Genomics. 2010 Feb 11;11:107. doi: 10.1186/1471-2164-11-107.


Mapping QTL for growth and shank traits in chickens divergently selected for high or low body weight.

Ankra-Badu GA, Le Bihan-Duval E, Mignon-Grasteau S, Pitel F, Beaumont C, Duclos MJ, Simon J, Carré W, Porter TE, Vignal A, Cogburn LA, Aggrey SE.

Anim Genet. 2010 Aug;41(4):400-5. doi: 10.1111/j.1365-2052.2009.02017.x. Epub 2010 Jan 20.


Contribution of radiation hybrids to genome mapping in domestic animals.

Faraut T, de Givry S, Hitte C, Lahbib-Mansais Y, Morisson M, Milan D, Schiex T, Servin B, Vignal A, Galibert F, Yerle M.

Cytogenet Genome Res. 2009;126(1-2):21-33. doi: 10.1159/000245904. Epub 2009 Dec 9.


QTL for several metabolic traits map to loci controlling growth and body composition in an F2 intercross between high- and low-growth chicken lines.

Nadaf J, Pitel F, Gilbert H, Duclos MJ, Vignoles F, Beaumont C, Vignal A, Porter TE, Cogburn LA, Aggrey SE, Simon J, Le Bihan-Duval E.

Physiol Genomics. 2009 Aug 7;38(3):241-9. doi: 10.1152/physiolgenomics.90384.2008. Epub 2009 Jun 16.


QTL for resistance to Salmonella carrier state confirmed in both experimental and commercial chicken lines.

Calenge F, Lecerf F, Demars J, Feve K, Vignoles F, Pitel F, Vignal A, Velge P, Sellier N, Beaumont C.

Anim Genet. 2009 Oct;40(5):590-7. doi: 10.1111/j.1365-2052.2009.01884.x. Epub 2009 Apr 24.


An integrated approach of genetic resistance to Salmonella carrier state in fowls: from genetics to genomics and modelling.

Beaumont C, Lecerf F, Protais J, Calenge F, Prevost K, Lalmanach AC, Chapuis H, Pitel F, Burlot T, Sellier N, Fravalo P, Vignal A, Velge P.

Dev Biol (Basel). 2008;132:353-357. doi: 10.1159/000317185.


Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution.

Griffin DK, Robertson LB, Tempest HG, Vignal A, Fillon V, Crooijmans RP, Groenen MA, Deryusheva S, Gaginskaya E, Carré W, Waddington D, Talbot R, Völker M, Masabanda JS, Burt DW.

BMC Genomics. 2008 Apr 14;9:168. doi: 10.1186/1471-2164-9-168.


Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping.

Douaud M, Fève K, Gerus M, Fillon V, Bardes S, Gourichon D, Dawson DA, Hanotte O, Burke T, Vignoles F, Morisson M, Tixier-Boichard M, Vignal A, Pitel F.

BMC Genomics. 2008 Mar 17;9:129. doi: 10.1186/1471-2164-9-129.


The chicken RH map: current state of progress and microchromosome mapping.

Morisson M, Denis M, Milan D, Klopp C, Leroux S, Bardes S, Pitel F, Vignoles F, Gérus M, Fillon V, Douaud M, Vignal A.

Cytogenet Genome Res. 2007;117(1-4):14-21.


Identification of QTL controlling meat quality traits in an F2 cross between two chicken lines selected for either low or high growth rate.

Nadaf J, Gilbert H, Pitel F, Berri CM, Feve K, Beaumont C, Duclos MJ, Vignal A, Porter TE, Simon J, Aggrey SE, Cogburn LA, Le Bihan-Duval E.

BMC Genomics. 2007 Jun 8;8:155.


FISH mapping of 57 BAC clones reveals strong conservation of synteny between Galliformes and Anseriformes.

Fillon V, Vignoles M, Crooijmans RP, Groenen MA, Zoorob R, Vignal A.

Anim Genet. 2007 Jun;38(3):303-7.


Female-specific DNA sequences in the chicken genome.

Granevitze Z, Blum S, Cheng H, Vignal A, Morisson M, Ben-Ari G, David L, Feldman MW, Weigend S, Hillel J.

J Hered. 2007 May-Jun;98(3):238-42. Epub 2007 Mar 29.


Cloning of ovocalyxin-36, a novel chicken eggshell protein related to lipopolysaccharide-binding proteins, bactericidal permeability-increasing proteins, and plunc family proteins.

Gautron J, Murayama E, Vignal A, Morisson M, McKee MD, Réhault S, Labas V, Belghazi M, Vidal ML, Nys Y, Hincke MT.

J Biol Chem. 2007 Feb 23;282(8):5273-86. Epub 2006 Dec 19.


FISH on avian lampbrush chromosomes produces higher resolution gene mapping.

Galkina S, Deryusheva S, Fillon V, Vignal A, Crooijmans R, Groenen M, Rodionov A, Gaginskaya E.

Genetica. 2006 Sep-Nov;128(1-3):241-51.


Search for QTL affecting the shape of the egg laying curve of the Japanese quail.

Minvielle F, Kayang BB, Inoue-Murayama M, Miwa M, Vignal A, Gourichon D, Neau A, Monvoisin JL, Ito Si.

BMC Genet. 2006 May 5;7:26.


Integrated maps in quail (Coturnix japonica) confirm the high degree of synteny conservation with chicken (Gallus gallus) despite 35 million years of divergence.

Kayang BB, Fillon V, Inoue-Murayama M, Miwa M, Leroux S, Fève K, Monvoisin JL, Pitel F, Vignoles M, Mouilhayrat C, Beaumont C, Ito S, Minvielle F, Vignal A.

BMC Genomics. 2006 May 2;7:101.


Fatness QTL on chicken chromosome 5 and interaction with sex.

Abasht B, Pitel F, Lagarrigue S, Le Bihan-Duval E, Le Roy P, Demeure O, Vignoles F, Simon J, Cogburn L, Aggrey S, Vignal A, Douaire M.

Genet Sel Evol. 2006 May-Jun;38(3):297-311. Epub 2006 Apr 26.


Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness.

Lagarrigue S, Pitel F, Carré W, Abasht B, Le Roy P, Neau A, Amigues Y, Sourdioux M, Simon J, Cogburn L, Aggrey S, Leclercq B, Vignal A, Douaire M.

Genet Sel Evol. 2006 Jan-Feb;38(1):85-97.


A gene-based radiation hybrid map of chicken microchromosome 14: comparison to human and alignment to the assembled chicken sequence.

Morisson M, Leroux S, Jiguet-Jiglaire C, Assaf S, Pitel F, Lagarrigue S, Bardes S, Feve K, Faraut T, Milan D, Vignal A.

Genet Sel Evol. 2005 Mar-Apr;37(2):229-51.


A genome scan with AFLP markers to detect fearfulness-related QTLs in Japanese quail.

Beaumont C, Roussot O, Feve K, Vignoles F, Leroux S, Pitel F, Faure JM, Mills AD, Guémené D, Sellier N, Mignon-Grasteau S, Le Roy P, Vignal A.

Anim Genet. 2005 Oct;36(5):401-7.


Mapping of plumage colour and blood protein loci on the microsatellite linkage map of the Japanese quail.

Miwa M, Inoue-Murayama M, Kayang BB, Vignal A, Minvielle F, Monvoisin JL, Takahashi H, Ito S.

Anim Genet. 2005 Oct;36(5):396-400. Erratum in: Anim Genet. 2005 Dec;36(6):542. Vignal, A [added].


A genome scan for quantitative trait loci affecting the Salmonella carrier-state in the chicken.

Tilquin P, Barrow PA, Marly J, Pitel F, Plisson-Petit F, Velge P, Vignal A, Baret PV, Bumstead N, Beaumont C.

Genet Sel Evol. 2005 Sep-Oct;37(5):539-61.


Microsatellite mapping of QTL affecting growth, feed consumption, egg production, tonic immobility and body temperature of Japanese quail.

Minvielle F, Kayang BB, Inoue-Murayama M, Miwa M, Vignal A, Gourichon D, Neau A, Monvoisin JL, Ito S.

BMC Genomics. 2005 Jun 8;6:87.

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