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Items: 1 to 50 of 56

1.

Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.

Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, Marques-Bonet T, Zhang G, Jiang H, Gilbert MTP.

Gigascience. 2018 Dec 1;7(12). doi: 10.1093/gigascience/giy151. No abstract available.

PMID:
30535251
2.

A human-derived antibody targets misfolded SOD1 and ameliorates motor symptoms in mouse models of amyotrophic lateral sclerosis.

Maier M, Welt T, Wirth F, Montrasio F, Preisig D, McAfoose J, Vieira FG, Kulic L, Späni C, Stehle T, Perrin S, Weber M, Hock C, Nitsch RM, Grimm J.

Sci Transl Med. 2018 Dec 5;10(470). pii: eaah3924. doi: 10.1126/scitranslmed.aah3924.

PMID:
30518612
3.

Population genomics of grey wolves and wolf-like canids in North America.

Sinding MS, Gopalakrishan S, Vieira FG, Samaniego Castruita JA, Raundrup K, Heide Jørgensen MP, Meldgaard M, Petersen B, Sicheritz-Ponten T, Mikkelsen JB, Marquard-Petersen U, Dietz R, Sonne C, Dalén L, Bachmann L, Wiig Ø, Hansen AJ, Gilbert MTP.

PLoS Genet. 2018 Nov 12;14(11):e1007745. doi: 10.1371/journal.pgen.1007745. eCollection 2018 Nov.

4.

Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq.

Kodama M, Brinch-Pedersen H, Sharma S, Holme IB, Joernsgaard B, Dzhanfezova T, Amby DB, Vieira FG, Liu S, Gilbert MTP.

BMC Genomics. 2018 Nov 8;19(1):811. doi: 10.1186/s12864-018-5135-6.

5.

Interspecific Gene Flow Shaped the Evolution of the Genus Canis.

Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, Fernandes C, Gaubert P, Koepfli KP, Budd J, Rueness EK, Heide-Jørgensen MP, Petersen B, Sicheritz-Ponten T, Bachmann L, Wiig Ø, Hansen AJ, Gilbert MTP.

Curr Biol. 2018 Nov 5;28(21):3441-3449.e5. doi: 10.1016/j.cub.2018.08.041. Epub 2018 Oct 18.

6.

Male-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture.

Wright AE, Fumagalli M, Cooney CR, Bloch NI, Vieira FG, Buechel SD, Kolm N, Mank JE.

Evol Lett. 2018 Feb 10;2(2):52-61. doi: 10.1002/evl3.39. eCollection 2018 Apr.

7.

The usefulness of chemical-shift magnetic resonance imaging for the evaluation of osteoid osteoma.

Costa FM, Canella C, Vieira FG, Vianna EM, Meohas W, Marchiori E.

Radiol Bras. 2018 May-Jun;51(3):156-161. doi: 10.1590/0100-3984.2017.0037.

8.

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines.

Hernández Y, Bernstein R, Pagan P, Vargas L, McCaig W, Ramrattan G, Akther S, Larracuente A, Di L, Vieira FG, Qiu WG.

BMC Bioinformatics. 2018 Mar 2;19(1):76. doi: 10.1186/s12859-018-2074-9.

9.

Adherence to the WCRF/AICR for Women in Breast Cancer Adjuvant Treatment submitted to Educational Nutritional Intervention.

de Liz S, Vieira FGK, de Assis MAA, Cardoso AL, Pazini CPL, Pietro PFD.

Nutr Cancer. 2018 Jul;70(5):737-747. doi: 10.1080/01635581.2017.1380207. Epub 2017 Nov 22.

PMID:
29166141
10.

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.

Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, Marques-Bonet T, Zhang G, Jiang H, Gilbert MTP.

Gigascience. 2017 Aug 1;6(8):1-13. doi: 10.1093/gigascience/gix049.

11.

Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice.

Wang H, Vieira FG, Crawford JE, Chu C, Nielsen R.

Genome Res. 2017 Jun;27(6):1029-1038. doi: 10.1101/gr.204800.116. Epub 2017 Apr 6.

12.

CuATSM efficacy is independently replicated in a SOD1 mouse model of ALS while unmetallated ATSM therapy fails to reveal benefits.

Vieira FG, Hatzipetros T, Thompson K, Moreno AJ, Kidd JD, Tassinari VR, Levine B, Perrin S, Gill A.

IBRO Rep. 2017 Mar 12;2:47-53. doi: 10.1016/j.ibror.2017.03.001. eCollection 2017 Jun.

13.

Setting health priorities in a community: a case example.

Sousa FA, Goulart MJ, Braga AM, Medeiros CM, Rego DC, Vieira FG, Pereira HJ, Tavares HM, Loura MM.

Rev Saude Publica. 2017 Mar 2;51(0):11. doi: 10.1590/S1518-8787.2017051006460. English, Portuguese.

14.

Comparative analysis of height estimation methods in hospitalized adults and elders.

Ferreira-Melo AP, Kuerten-de-Salles R, Vieira FG, Ferreira MG.

Nutr Hosp. 2017 Feb 1;34(1):116-121. doi: 10.20960/nh.986.

15.

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.

Sánchez Barreiro F, Vieira FG, Martin MD, Haile J, Gilbert MT, Wales N.

Mol Ecol Resour. 2017 Mar;17(2):209-220. doi: 10.1111/1755-0998.12610. Epub 2016 Nov 7.

PMID:
27762072
16.

Bizarre Parosteal Osteochondromatous Proliferation.

Vieira FG, Canella C, Costa FM, Mendonça S, Marchiori E.

J Clin Rheumatol. 2016 Sep;22(6):333. doi: 10.1097/RHU.0000000000000402. No abstract available.

PMID:
27556245
17.

Subungual Glomus Tumor.

Vieira FG, Nakamura R, Costa FM, Canella C, Marchiori E.

J Clin Rheumatol. 2016 Sep;22(6):331. doi: 10.1097/RHU.0000000000000418. No abstract available.

PMID:
27556243
18.

Numerical method to digital photoelasticity using plane polariscope.

Júnior PA, Vieira FG, Magalhães CA, Ribeiro JS, Rios IG.

Opt Express. 2016 Jun 13;24(12):12617-24. doi: 10.1364/OE.24.012617.

PMID:
27410283
19.

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes.

Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, Worley KC, Excoffier L, Morin PA, Gilbert MT, Wolf JB.

Nat Commun. 2016 May 31;7:11693. doi: 10.1038/ncomms11693.

20.

The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication.

Wang H, Xu X, Vieira FG, Xiao Y, Li Z, Wang J, Nielsen R, Chu C.

Mol Plant. 2016 Jul 6;9(7):975-85. doi: 10.1016/j.molp.2016.04.018. Epub 2016 May 12.

21.

Estimating IBD tracts from low coverage NGS data.

Vieira FG, Albrechtsen A, Nielsen R.

Bioinformatics. 2016 Jul 15;32(14):2096-102. doi: 10.1093/bioinformatics/btw212. Epub 2016 Apr 22.

PMID:
27153648
22.

Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe.

Skovrind M, Olsen MT, Vieira FG, Pacheco G, Carl H, Gilbert MT, Møller PR.

Ecol Evol. 2016 Jan 22;6(4):1064-74. doi: 10.1002/ece3.1909. eCollection 2016 Feb. Erratum in: Ecol Evol. 2016 Mar;6(6):1898.

23.

Genomic insights into the Ixodes scapularis tick vector of Lyme disease.

Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, Thiagarajan M, Joardar VS, Hannick LI, Bidwell S, Hammond MP, Young S, Zeng Q, Abrudan JL, Almeida FC, Ayllón N, Bhide K, Bissinger BW, Bonzon-Kulichenko E, Buckingham SD, Caffrey DR, Caimano MJ, Croset V, Driscoll T, Gilbert D, Gillespie JJ, Giraldo-Calderón GI, Grabowski JM, Jiang D, Khalil SM, Kim D, Kocan KM, Koči J, Kuhn RJ, Kurtti TJ, Lees K, Lang EG, Kennedy RC, Kwon H, Perera R, Qi Y, Radolf JD, Sakamoto JM, Sánchez-Gracia A, Severo MS, Silverman N, Šimo L, Tojo M, Tornador C, Van Zee JP, Vázquez J, Vieira FG, Villar M, Wespiser AR, Yang Y, Zhu J, Arensburger P, Pietrantonio PV, Barker SC, Shao R, Zdobnov EM, Hauser F, Grimmelikhuijzen CJ, Park Y, Rozas J, Benton R, Pedra JH, Nelson DR, Unger MF, Tubio JM, Tu Z, Robertson HM, Shumway M, Sutton G, Wortman JR, Lawson D, Wikel SK, Nene VM, Fraser CM, Collins FH, Birren B, Nelson KE, Caler E, Hill CA.

Nat Commun. 2016 Feb 9;7:10507. doi: 10.1038/ncomms10507.

24.

Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans.

Martin MD, Vieira FG, Ho SY, Wales N, Schubert M, Seguin-Orlando A, Ristaino JB, Gilbert MT.

Mol Biol Evol. 2016 Feb;33(2):478-91. doi: 10.1093/molbev/msv241. Epub 2015 Nov 17.

25.

A Quick Phenotypic Neurological Scoring System for Evaluating Disease Progression in the SOD1-G93A Mouse Model of ALS.

Hatzipetros T, Kidd JD, Moreno AJ, Thompson K, Gill A, Vieira FG.

J Vis Exp. 2015 Oct 6;(104). doi: 10.3791/53257.

26.

Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse.

Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, Gamba C, Lorente-Galdos B, Polani S, Steiner C, Neuditschko M, Jagannathan V, Feh C, Greenblatt CL, Ludwig A, Abramson NI, Zimmermann W, Schafberg R, Tikhonov A, Sicheritz-Ponten T, Willerslev E, Marques-Bonet T, Ryder OA, McCue M, Rieder S, Leeb T, Slatkin M, Orlando L.

Curr Biol. 2015 Oct 5;25(19):2577-83. doi: 10.1016/j.cub.2015.08.032. Epub 2015 Sep 24.

27.

Guanabenz Treatment Accelerates Disease in a Mutant SOD1 Mouse Model of ALS.

Vieira FG, Ping Q, Moreno AJ, Kidd JD, Thompson K, Jiang B, Lincecum JM, Wang MZ, De Zutter GS, Tassinari VR, Levine B, Hatzipetros T, Gill A, Perrin S.

PLoS One. 2015 Aug 19;10(8):e0135570. doi: 10.1371/journal.pone.0135570. eCollection 2015.

28.

Cloning and expression of the xynA1 gene encoding a xylanase of the GH10 group in Caulobacter crescentus.

Graciano L, Corrêa JM, Vieira FG, Bosetto A, Loth EA, Kadowaki MK, Gandra RF, Simão Rde C.

Appl Biochem Biotechnol. 2015 Apr;175(8):3915-29. doi: 10.1007/s12010-015-1560-z. Epub 2015 Mar 20.

PMID:
25791579
29.

The origin and evolution of maize in the Southwestern United States.

da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J, Gilbert MT.

Nat Plants. 2015 Jan 8;1:14003. doi: 10.1038/nplants.2014.3.

PMID:
27246050
30.

Nutrition education intervention for women with breast cancer: effect on nutritional factors and oxidative stress.

Schiavon CC, Vieira FG, Ceccatto V, de Liz S, Cardoso AL, Sabel C, Gonzalez-Chica DA, da Silva EL, Galvan D, Crippa CG, Di Pietro PF.

J Nutr Educ Behav. 2015 Jan-Feb;47(1):2-9. doi: 10.1016/j.jneb.2014.09.005.

PMID:
25528078
31.

Dexpramipexole is ineffective in two models of ALS related neurodegeneration.

Vieira FG, LaDow E, Moreno A, Kidd JD, Levine B, Thompson K, Gill A, Finkbeiner S, Perrin S.

PLoS One. 2014 Dec 19;9(12):e91608. doi: 10.1371/journal.pone.0091608. eCollection 2014.

32.

Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families.

Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J.

Genome Biol Evol. 2014 Jun 5;6(6):1454-65. doi: 10.1093/gbe/evu117.

33.

MAPK signaling correlates with the antidepressant effects of ketamine.

Réus GZ, Vieira FG, Abelaira HM, Michels M, Tomaz DB, dos Santos MA, Carlessi AS, Neotti MV, Matias BI, Luz JR, Dal-Pizzol F, Quevedo J.

J Psychiatr Res. 2014 Aug;55:15-21. doi: 10.1016/j.jpsychires.2014.04.010. Epub 2014 Apr 18.

PMID:
24819632
34.

ngsTools: methods for population genetics analyses from next-generation sequencing data.

Fumagalli M, Vieira FG, Linderoth T, Nielsen R.

Bioinformatics. 2014 May 15;30(10):1486-7. doi: 10.1093/bioinformatics/btu041. Epub 2014 Jan 23.

35.

C57BL/6J congenic Prp-TDP43A315T mice develop progressive neurodegeneration in the myenteric plexus of the colon without exhibiting key features of ALS.

Hatzipetros T, Bogdanik LP, Tassinari VR, Kidd JD, Moreno AJ, Davis C, Osborne M, Austin A, Vieira FG, Lutz C, Perrin S.

Brain Res. 2014 Oct 10;1584:59-72. doi: 10.1016/j.brainres.2013.10.013. Epub 2013 Oct 18.

PMID:
24141148
36.

Quantifying population genetic differentiation from next-generation sequencing data.

Fumagalli M, Vieira FG, Korneliussen TS, Linderoth T, Huerta-Sánchez E, Albrechtsen A, Nielsen R.

Genetics. 2013 Nov;195(3):979-92. doi: 10.1534/genetics.113.154740. Epub 2013 Aug 26.

37.

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation.

Vieira FG, Fumagalli M, Albrechtsen A, Nielsen R.

Genome Res. 2013 Nov;23(11):1852-61. doi: 10.1101/gr.157388.113. Epub 2013 Aug 15.

38.

Increased body weight and blood oxidative stress in breast cancer patients after adjuvant chemotherapy.

Galvan D, Pietro PF, Vieira FG, Ambrosi C, Cesa C, Cardoso AL, Cavalcante Lda S, Crippa CG, Silva EL.

Breast J. 2013 Sep-Oct;19(5):555-7. doi: 10.1111/tbj.12165. Epub 2013 Jul 29. No abstract available.

PMID:
23895736
39.

Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses.

Vieira FG, Forêt S, He X, Rozas J, Field LM, Zhou JJ.

PLoS One. 2012;7(8):e43034. doi: 10.1371/journal.pone.0043034. Epub 2012 Aug 27.

40.

Dietary intake and oxidative stress in breast cancer: before and after treatments.

Rockenbach G, Di Pietro PF, Ambrosi C, Boaventura BC, Vieira FG, Crippa CG, Da Silva EL, Fausto MA.

Nutr Hosp. 2011 Jul-Aug;26(4):737-44. doi: 10.1590/S0212-16112011000400011.

41.

Improvement of serum antioxidant status in humans after the acute intake of apple juices.

Vieira FG, Di Pietro PF, da Silva EL, Borges GS, Nunes EC, Fett R.

Nutr Res. 2012 Mar;32(3):229-32. doi: 10.1016/j.nutres.2011.12.008. Epub 2012 Feb 7.

PMID:
22464810
42.

[Factors associated with changes in energy intake of women after treatment for breast cancer].

Ambrosi C, Di Pietro PF, Rockenbach G, Vieira FG, Galvan D, Crippa CG, Fausto MA.

Rev Bras Ginecol Obstet. 2011 Aug;33(8):207-13. Portuguese.

43.

BadiRate: estimating family turnover rates by likelihood-based methods.

Librado P, Vieira FG, Rozas J.

Bioinformatics. 2012 Jan 15;28(2):279-81. doi: 10.1093/bioinformatics/btr623. Epub 2011 Nov 10.

44.

Factors associated with oxidative stress in women with breast cancer.

Vieira FG, Di Pietro PF, Boaventura BC, Ambrosi C, Rockenbach G, Fausto MA, Crippa CG, Da Silva EL.

Nutr Hosp. 2011 May-Jun;26(3):528-36. doi: 10.1590/S0212-16112011000300015.

45.
46.

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.

Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, Veenstra JA, Walenz B, Tubío JM, Ribeiro JM, Rozas J, Johnston JS, Reese JT, Popadic A, Tojo M, Raoult D, Reed DL, Tomoyasu Y, Kraus E, Mittapalli O, Margam VM, Li HM, Meyer JM, Johnson RM, Romero-Severson J, Vanzee JP, Alvarez-Ponce D, Vieira FG, Aguadé M, Guirao-Rico S, Anzola JM, Yoon KS, Strycharz JP, Unger MF, Christley S, Lobo NF, Seufferheld MJ, Wang N, Dasch GA, Struchiner CJ, Madey G, Hannick LI, Bidwell S, Joardar V, Caler E, Shao R, Barker SC, Cameron S, Bruggner RV, Regier A, Johnson J, Viswanathan L, Utterback TR, Sutton GG, Lawson D, Waterhouse RM, Venter JC, Strausberg RL, Berenbaum MR, Collins FH, Zdobnov EM, Pittendrigh BR.

Proc Natl Acad Sci U S A. 2010 Jul 6;107(27):12168-73. doi: 10.1073/pnas.1003379107. Epub 2010 Jun 21. Erratum in: Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6335. Krause, Emily [corrected to Kraus, Emily].

47.

Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum.

Zhou JJ, Vieira FG, He XL, Smadja C, Liu R, Rozas J, Field LM.

Insect Mol Biol. 2010 Mar;19 Suppl 2:113-22. doi: 10.1111/j.1365-2583.2009.00919.x.

PMID:
20482644
48.

From transcriptome analysis to therapeutic anti-CD40L treatment in the SOD1 model of amyotrophic lateral sclerosis.

Lincecum JM, Vieira FG, Wang MZ, Thompson K, De Zutter GS, Kidd J, Moreno A, Sanchez R, Carrion IJ, Levine BA, Al-Nakhala BM, Sullivan SM, Gill A, Perrin S.

Nat Genet. 2010 May;42(5):392-9. doi: 10.1038/ng.557. Epub 2010 Mar 28.

PMID:
20348957
49.

Activity and contents of polyphenolic antioxidants in the whole fruit, flesh and peel of three apple cultivars.

Vieira FG, Borges Gda S, Copetti C, Gonzaga LV, Nunes Eda C, Fett R.

Arch Latinoam Nutr. 2009 Mar;59(1):101-6.

PMID:
19480352
50.

Molecular evolution of the major chemosensory gene families in insects.

Sánchez-Gracia A, Vieira FG, Rozas J.

Heredity (Edinb). 2009 Sep;103(3):208-16. doi: 10.1038/hdy.2009.55. Epub 2009 May 13. Review.

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