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Items: 17

1.

A comparison of Bayesian and frequentist approaches to incorporating external information for the prediction of prostate cancer risk.

Newcombe PJ, Reck BH, Sun J, Platek GT, Verzilli C, Kader AK, Kim ST, Hsu FC, Zhang Z, Zheng SL, Mooser VE, Condreay LD, Spraggs CF, Whittaker JC, Rittmaster RS, Xu J.

Genet Epidemiol. 2012 Jan;36(1):71-83. doi: 10.1002/gepi.21600.

2.

An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people.

Nelson MR, Wegmann D, Ehm MG, Kessner D, St Jean P, Verzilli C, Shen J, Tang Z, Bacanu SA, Fraser D, Warren L, Aponte J, Zawistowski M, Liu X, Zhang H, Zhang Y, Li J, Li Y, Li L, Woollard P, Topp S, Hall MD, Nangle K, Wang J, Abecasis G, Cardon LR, Zöllner S, Whittaker JC, Chissoe SL, Novembre J, Mooser V.

Science. 2012 Jul 6;337(6090):100-4. doi: 10.1126/science.1217876. Epub 2012 May 17.

3.

Comparative analysis of genome-wide association studies signals for lipids, diabetes, and coronary heart disease: Cardiovascular Biomarker Genetics Collaboration.

Angelakopoulou A, Shah T, Sofat R, Shah S, Berry DJ, Cooper J, Palmen J, Tzoulaki I, Wong A, Jefferis BJ, Maniatis N, Drenos F, Gigante B, Hardy R, Laxton RC, Leander K, Motterle A, Simpson IA, Smeeth L, Thomson A, Verzilli C, Kuh D, Ireland H, Deanfield J, Caulfield M, Wallace C, Samani N, Munroe PB, Lathrop M, Fowkes FG, Marmot M, Whincup PH, Whittaker JC, de Faire U, Kivimaki M, Kumari M, Hypponen E, Power C, Humphries SE, Talmud PJ, Price J, Morris RW, Ye S, Casas JP, Hingorani AD.

Eur Heart J. 2012 Feb;33(3):393-407. doi: 10.1093/eurheartj/ehr225. Epub 2011 Jul 30.

4.

Bayesian semiparametric meta-analysis for genetic association studies.

De Iorio M, Newcombe PJ, Tachmazidou I, Verzilli CJ, Whittaker JC.

Genet Epidemiol. 2011 Jul;35(5):333-40. doi: 10.1002/gepi.20581. Epub 2011 Mar 11.

PMID:
21400586
5.

Defining the true sensitivity of culture for the diagnosis of melioidosis using Bayesian latent class models.

Limmathurotsakul D, Jamsen K, Arayawichanont A, Simpson JA, White LJ, Lee SJ, Wuthiekanun V, Chantratita N, Cheng A, Day NP, Verzilli C, Peacock SJ.

PLoS One. 2010 Aug 30;5(8):e12485. doi: 10.1371/journal.pone.0012485.

6.

Bayesian methods for meta-analysis of causal relationships estimated using genetic instrumental variables.

Burgess S, Thompson SG; CRP CHD Genetics Collaboration, Burgess S, Thompson SG, Andrews G, Samani NJ, Hall A, Whincup P, Morris R, Lawlor DA, Davey Smith G, Timpson N, Ebrahim S, Ben-Shlomo Y, Davey Smith G, Timpson N, Brown M, Ricketts S, Sandhu M, Reiner A, Psaty B, Lange L, Cushman M, Hung J, Thompson P, Beilby J, Warrington N, Palmer LJ, Nordestgaard BG, Tybjaerg-Hansen A, Zacho J, Wu C, Lowe G, Tzoulaki I, Kumari M, Sandhu M, Yamamoto JF, Chiodini B, Franzosi M, Hankey GJ, Jamrozik K, Palmer L, Rimm E, Pai J, Psaty B, Heckbert S, Bis J, Anand S, Engert J, Collins R, Clarke R, Melander O, Berglund G, Ladenvall P, Johansson L, Jansson JH, Hallmans G, Hingorani A, Humphries S, Rimm E, Manson J, Pai J, Watkins H, Clarke R, Hopewell J, Saleheen D, Frossard R, Danesh J, Sattar N, Robertson M, Shepherd J, Schaefer E, Hofman A, Witteman JC, Kardys I, Ben-Shlomo Y, Davey Smith G, Timpson N, de Faire U, Bennet A, Sattar N, Ford I, Packard C, Kumari M, Manson J, Lawlor DA, Davey Smith G, Anand S, Collins R, Casas JP, Danesh J, Davey Smith G, Franzosi M, Hingorani A, Lawlor DA, Manson J, Nordestgaard BG, Samani NJ, Sandhu M, Smeeth L, Wensley F, Anand S, Bowden J, Burgess S, Casas JP, Di Angelantonio E, Engert J, Gao P, Shah T, Smeeth L, Thompson SG, Verzilli C, Walker M, Whittaker J, Hingorani A, Danesh J.

Stat Med. 2010 May 30;29(12):1298-311. doi: 10.1002/sim.3843.

7.

A novel protective prion protein variant that colocalizes with kuru exposure.

Mead S, Whitfield J, Poulter M, Shah P, Uphill J, Campbell T, Al-Dujaily H, Hummerich H, Beck J, Mein CA, Verzilli C, Whittaker J, Alpers MP, Collinge J.

N Engl J Med. 2009 Nov 19;361(21):2056-65. doi: 10.1056/NEJMoa0809716.

8.

Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.

Talmud PJ, Drenos F, Shah S, Shah T, Palmen J, Verzilli C, Gaunt TR, Pallas J, Lovering R, Li K, Casas JP, Sofat R, Kumari M, Rodriguez S, Johnson T, Newhouse SJ, Dominiczak A, Samani NJ, Caulfield M, Sever P, Stanton A, Shields DC, Padmanabhan S, Melander O, Hastie C, Delles C, Ebrahim S, Marmot MG, Smith GD, Lawlor DA, Munroe PB, Day IN, Kivimaki M, Whittaker J, Humphries SE, Hingorani AD; ASCOT investigators; NORDIL investigators; BRIGHT Consortium.

Am J Hum Genet. 2009 Nov;85(5):628-42. doi: 10.1016/j.ajhg.2009.10.014.

9.

Multilocus Bayesian meta-analysis of gene-disease associations.

Newcombe PJ, Verzilli C, Casas JP, Hingorani AD, Smeeth L, Whittaker JC.

Am J Hum Genet. 2009 May;84(5):567-80. doi: 10.1016/j.ajhg.2009.04.001. Epub 2009 Apr 30.

10.

Searching for genotype-phenotype structure: using hierarchical log-linear models in Crohn disease.

Chapman JM, Onnie CM, Prescott NJ, Fisher SA, Mansfield JC, Mathew CG, Lewis CM, Verzilli CJ, Whittaker JC.

Am J Hum Genet. 2009 Feb;84(2):178-87. doi: 10.1016/j.ajhg.2008.12.015. Epub 2009 Jan 29.

11.

Genetic risk factors for variant Creutzfeldt-Jakob disease: a genome-wide association study.

Mead S, Poulter M, Uphill J, Beck J, Whitfield J, Webb TE, Campbell T, Adamson G, Deriziotis P, Tabrizi SJ, Hummerich H, Verzilli C, Alpers MP, Whittaker JC, Collinge J.

Lancet Neurol. 2009 Jan;8(1):57-66. doi: 10.1016/S1474-4422(08)70265-5.

12.

Bayesian survival analysis in genetic association studies.

Tachmazidou I, Andrew T, Verzilli CJ, Johnson MR, De Iorio M.

Bioinformatics. 2008 Sep 15;24(18):2030-6. doi: 10.1093/bioinformatics/btn351. Epub 2008 Jul 9.

13.

Bayesian meta-analysis of genetic association studies with different sets of markers.

Verzilli C, Shah T, Casas JP, Chapman J, Sandhu M, Debenham SL, Boekholdt MS, Khaw KT, Wareham NJ, Judson R, Benjamin EJ, Kathiresan S, Larson MG, Rong J, Sofat R, Humphries SE, Smeeth L, Cavalleri G, Whittaker JC, Hingorani AD.

Am J Hum Genet. 2008 Apr;82(4):859-72. doi: 10.1016/j.ajhg.2008.01.016.

14.

Genetic association mapping via evolution-based clustering of haplotypes.

Tachmazidou I, Verzilli CJ, De Iorio M.

PLoS Genet. 2007 Jul;3(7):e111.

15.

A spatial probit model for fine-scale mapping of disease genes.

De Iorio M, Verzilli CJ.

Genet Epidemiol. 2007 Apr;31(3):252-60.

PMID:
17266116
16.

Bayesian graphical models for genomewide association studies.

Verzilli CJ, Stallard N, Whittaker JC.

Am J Hum Genet. 2006 Jul;79(1):100-12. Epub 2006 May 30.

17.

Bayesian modelling of multivariate quantitative traits using seemingly unrelated regressions.

Verzilli CJ, Stallard N, Whittaker JC.

Genet Epidemiol. 2005 May;28(4):313-25.

PMID:
15789447

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