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Enrichment of persisters enabled by a ß-lactam-induced filamentation method reveals their stochastic single-cell awakening.

Windels EM, Ben Meriem Z, Zahir T, Verstrepen KJ, Hersen P, Van den Bergh B, Michiels J.

Commun Biol. 2019 Nov 29;2:426. doi: 10.1038/s42003-019-0672-3. eCollection 2019.


Microbial communities of the house fly Musca domestica vary with geographical location and habitat.

Park R, Dzialo MC, Spaepen S, Nsabimana D, Gielens K, Devriese H, Crauwels S, Tito RY, Raes J, Lievens B, Verstrepen KJ.

Microbiome. 2019 Nov 8;7(1):147. doi: 10.1186/s40168-019-0748-9.


Correction: Reducing phenolic off-flavors through CRISPR-based gene editing of the FDC1 gene in Saccharomyces cerevisiae x Saccharomyces eubayanus hybrid lager beer yeasts.

Mertens S, Gallone B, Steensels J, Herrera-Malaver B, Cortebeek J, Nolmans R, Saels V, Vyas VK, Verstrepen KJ.

PLoS One. 2019 Oct 24;14(10):e0224525. doi: 10.1371/journal.pone.0224525. eCollection 2019.


Interspecific hybridization facilitates niche adaptation in beer yeast.

Gallone B, Steensels J, Mertens S, Dzialo MC, Gordon JL, Wauters R, Theßeling FA, Bellinazzo F, Saels V, Herrera-Malaver B, Prahl T, White C, Hutzler M, Meußdoerffer F, Malcorps P, Souffriau B, Daenen L, Baele G, Maere S, Verstrepen KJ.

Nat Ecol Evol. 2019 Nov;3(11):1562-1575. doi: 10.1038/s41559-019-0997-9. Epub 2019 Oct 21.


A Hands-On Guide to Brewing and Analyzing Beer in the Laboratory.

Thesseling FA, Bircham PW, Mertens S, Voordeckers K, Verstrepen KJ.

Curr Protoc Microbiol. 2019 Sep;54(1):e91. doi: 10.1002/cpmc.91.


Identification of a Wheat Thaumatin-like Protein That Inhibits Saccharomyces cerevisiae.

Van der Maelen E, Rezaei MN, Struyf N, Proost P, Verstrepen KJ, Courtin CM.

J Agric Food Chem. 2019 Sep 18;67(37):10423-10431. doi: 10.1021/acs.jafc.9b03432. Epub 2019 Sep 5.


Apibacter muscae sp. nov., a novel bacterial species isolated from house flies.

Park R, Dzialo MC, Nsabimana D, Lievens B, Verstrepen KJ.

Int J Syst Evol Microbiol. 2019 Nov;69(11):3586-3592. doi: 10.1099/ijsem.0.003667.


Domestication of Industrial Microbes.

Steensels J, Gallone B, Voordeckers K, Verstrepen KJ.

Curr Biol. 2019 May 20;29(10):R381-R393. doi: 10.1016/j.cub.2019.04.025. Review.


Network hubs affect evolvability.

Helsen J, Frickel J, Jelier R, Verstrepen KJ.

PLoS Biol. 2019 Jan 30;17(1):e3000111. doi: 10.1371/journal.pbio.3000111. eCollection 2019 Jan.


On the duration of the microbial lag phase.

Vermeersch L, Perez-Samper G, Cerulus B, Jariani A, Gallone B, Voordeckers K, Steensels J, Verstrepen KJ.

Curr Genet. 2019 Jun;65(3):721-727. doi: 10.1007/s00294-019-00938-2. Epub 2019 Jan 21. Review.


Development and validation of a glass-silicon microdroplet-based system to measure sulfite concentrations in beverages.

Vervoort Y, Wiederkehr RS, Smets M, Fauvart M, Stakenborg T, Woronoff G, Lagae L, Verstrepen KJ.

Anal Bioanal Chem. 2019 Feb;411(6):1127-1134. doi: 10.1007/s00216-018-1516-6. Epub 2019 Jan 14.


Reducing phenolic off-flavors through CRISPR-based gene editing of the FDC1 gene in Saccharomyces cerevisiae x Saccharomyces eubayanus hybrid lager beer yeasts.

Mertens S, Gallone B, Steensels J, Herrera-Malaver B, Cortebeek J, Nolmans R, Saels V, Vyas VK, Verstrepen KJ.

PLoS One. 2019 Jan 9;14(1):e0209124. doi: 10.1371/journal.pone.0209124. eCollection 2019. Erratum in: PLoS One. 2019 Oct 24;14(10):e0224525.


Contribution of Eat1 and Other Alcohol Acyltransferases to Ester Production in Saccharomyces cerevisiae.

Kruis AJ, Gallone B, Jonker T, Mars AE, van Rijswijck IMH, Wolkers-Rooijackers JCM, Smid EJ, Steensels J, Verstrepen KJ, Kengen SWM, van der Oost J, Weusthuis RA.

Front Microbiol. 2018 Dec 21;9:3202. doi: 10.3389/fmicb.2018.03202. eCollection 2018.


Mapping the landscape of tandem repeat variability by targeted long read single molecule sequencing in familial X-linked intellectual disability.

Zablotskaya A, Van Esch H, Verstrepen KJ, Froyen G, Vermeesch JR.

BMC Med Genomics. 2018 Dec 19;11(1):123. doi: 10.1186/s12920-018-0446-7.


The Crabtree Effect Shapes the Saccharomyces cerevisiae Lag Phase during the Switch between Different Carbon Sources.

Perez-Samper G, Cerulus B, Jariani A, Vermeersch L, Barrajón Simancas N, Bisschops MMM, van den Brink J, Solis-Escalante D, Gallone B, De Maeyer D, van Bael E, Wenseleers T, Michiels J, Marchal K, Daran-Lapujade P, Verstrepen KJ.

MBio. 2018 Oct 30;9(5). pii: e01331-18. doi: 10.1128/mBio.01331-18.


Transition between fermentation and respiration determines history-dependent behavior in fluctuating carbon sources.

Cerulus B, Jariani A, Perez-Samper G, Vermeersch L, Pietsch JM, Crane MM, New AM, Gallone B, Roncoroni M, Dzialo MC, Govers SK, Hendrickx JO, Galle E, Coomans M, Berden P, Verbandt S, Swain PS, Verstrepen KJ.

Elife. 2018 Oct 9;7. pii: e39234. doi: 10.7554/eLife.39234.


Kluyveromyces marxianus yeast enables the production of low FODMAP whole wheat breads.

Struyf N, Vandewiele H, Herrera-Malaver B, Verspreet J, Verstrepen KJ, Courtin CM.

Food Microbiol. 2018 Dec;76:135-145. doi: 10.1016/ Epub 2018 May 3.


Sweet Scents: Nectar Specialist Yeasts Enhance Nectar Attraction of a Generalist Aphid Parasitoid Without Affecting Survival.

Sobhy IS, Baets D, Goelen T, Herrera-Malaver B, Bosmans L, Van den Ende W, Verstrepen KJ, Wäckers F, Jacquemyn H, Lievens B.

Front Plant Sci. 2018 Jul 16;9:1009. doi: 10.3389/fpls.2018.01009. eCollection 2018.


SCRaMbLEing to understand and exploit structural variation in genomes.

Steensels J, Gorkovskiy A, Verstrepen KJ.

Nat Commun. 2018 May 22;9(1):1937. doi: 10.1038/s41467-018-04308-3. No abstract available.


Bioflavoring by non-conventional yeasts in sequential beer fermentations.

Holt S, Mukherjee V, Lievens B, Verstrepen KJ, Thevelein JM.

Food Microbiol. 2018 Jun;72:55-66. doi: 10.1016/ Epub 2017 Nov 16.


Characterization and Degradation of Pectic Polysaccharides in Cocoa Pulp.

Meersman E, Struyf N, Kyomugasho C, Jamsazzadeh Kermani Z, Santiago JS, Baert E, Hemdane S, Vrancken G, Verstrepen KJ, Courtin CM, Hendrickx M, Steensels J.

J Agric Food Chem. 2017 Nov 8;65(44):9726-9734. doi: 10.1021/acs.jafc.7b03854. Epub 2017 Oct 26.


Phenotypic landscape of non-conventional yeast species for different stress tolerance traits desirable in bioethanol fermentation.

Mukherjee V, Radecka D, Aerts G, Verstrepen KJ, Lievens B, Thevelein JM.

Biotechnol Biofuels. 2017 Sep 13;10:216. doi: 10.1186/s13068-017-0899-5. eCollection 2017.


Origins, evolution, domestication and diversity of Saccharomyces beer yeasts.

Gallone B, Mertens S, Gordon JL, Maere S, Verstrepen KJ, Steensels J.

Curr Opin Biotechnol. 2018 Feb;49:148-155. doi: 10.1016/j.copbio.2017.08.005. Epub 2017 Sep 3. Review.


Saccharomyces cerevisiae and Kluyveromyces marxianus Cocultures Allow Reduction of Fermentable Oligo-, Di-, and Monosaccharides and Polyols Levels in Whole Wheat Bread.

Struyf N, Laurent J, Verspreet J, Verstrepen KJ, Courtin CM.

J Agric Food Chem. 2017 Oct 4;65(39):8704-8713. doi: 10.1021/acs.jafc.7b02793. Epub 2017 Sep 22.


Variable repeats in the eukaryotic polyubiquitin gene ubi4 modulate proteostasis and stress survival.

Gemayel R, Yang Y, Dzialo MC, Kominek J, Vowinckel J, Saels V, Van Huffel L, van der Zande E, Ralser M, Steensels J, Voordeckers K, Verstrepen KJ.

Nat Commun. 2017 Aug 30;8(1):397. doi: 10.1038/s41467-017-00533-4.


Physiology, ecology and industrial applications of aroma formation in yeast.

Dzialo MC, Park R, Steensels J, Lievens B, Verstrepen KJ.

FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S95-S128. doi: 10.1093/femsre/fux031. Review.


Constraints and consequences of the emergence of amino acid repeats in eukaryotic proteins.

Chavali S, Chavali PL, Chalancon G, de Groot NS, Gemayel R, Latysheva NS, Ing-Simmons E, Verstrepen KJ, Balaji S, Babu MM.

Nat Struct Mol Biol. 2017 Sep;24(9):765-777. doi: 10.1038/nsmb.3441. Epub 2017 Aug 14.


A Mutant Isoform of ObgE Causes Cell Death by Interfering with Cell Division.

Dewachter L, Verstraeten N, Jennes M, Verbeelen T, Biboy J, Monteyne D, Pérez-Morga D, Verstrepen KJ, Vollmer W, Fauvart M, Michiels J.

Front Microbiol. 2017 Jun 28;8:1193. doi: 10.3389/fmicb.2017.01193. eCollection 2017.


Evolutionary Context Improves Regulatory Network Predictions.

Gordon JL, Gallone B, Maere S, Verstrepen KJ.

Cell Syst. 2017 May 24;4(5):478-479. doi: 10.1016/j.cels.2017.05.004.


Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli.

Swings T, Van den Bergh B, Wuyts S, Oeyen E, Voordeckers K, Verstrepen KJ, Fauvart M, Verstraeten N, Michiels J.

Elife. 2017 May 2;6. pii: e22939. doi: 10.7554/eLife.22939.


Substrate-Limited Saccharomyces cerevisiae Yeast Strains Allow Control of Fermentation during Bread Making.

Struyf N, Laurent J, Verspreet J, Verstrepen KJ, Courtin CM.

J Agric Food Chem. 2017 Apr 26;65(16):3368-3377. doi: 10.1021/acs.jafc.7b00313. Epub 2017 Apr 14.


High-throughput system-wide engineering and screening for microbial biotechnology.

Vervoort Y, Linares AG, Roncoroni M, Liu C, Steensels J, Verstrepen KJ.

Curr Opin Biotechnol. 2017 Aug;46:120-125. doi: 10.1016/j.copbio.2017.02.011. Epub 2017 Mar 24. Review.


Fermentation assays reveal differences in sugar and (off-) flavor metabolism across different Brettanomyces bruxellensis strains.

Crauwels S, Van Opstaele F, Jaskula-Goiris B, Steensels J, Verreth C, Bosmans L, Paulussen C, Herrera-Malaver B, de Jonge R, De Clippeleer J, Marchal K, De Samblanx G, Willems KA, Verstrepen KJ, Aerts G, Lievens B.

FEMS Yeast Res. 2017 Jan;17(1). pii: fow105. doi: 10.1093/femsyr/fow105. Epub 2016 Dec 11.


Non-Conventional Yeast Strains Increase the Aroma Complexity of Bread.

Aslankoohi E, Herrera-Malaver B, Rezaei MN, Steensels J, Courtin CM, Verstrepen KJ.

PLoS One. 2016 Oct 24;11(10):e0165126. doi: 10.1371/journal.pone.0165126. eCollection 2016.


Establishing the relative importance of damaged starch and fructan as sources of fermentable sugars in wheat flour and whole meal bread dough fermentations.

Struyf N, Laurent J, Lefevere B, Verspreet J, Verstrepen KJ, Courtin CM.

Food Chem. 2017 Mar 1;218:89-98. doi: 10.1016/j.foodchem.2016.09.004. Epub 2016 Sep 4.


Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts.

Gallone B, Steensels J, Prahl T, Soriaga L, Saels V, Herrera-Malaver B, Merlevede A, Roncoroni M, Voordeckers K, Miraglia L, Teiling C, Steffy B, Taylor M, Schwartz A, Richardson T, White C, Baele G, Maere S, Verstrepen KJ.

Cell. 2016 Sep 8;166(6):1397-1410.e16. doi: 10.1016/j.cell.2016.08.020.


Frequency of antibiotic application drives rapid evolutionary adaptation of Escherichia coli persistence.

Van den Bergh B, Michiels JE, Wenseleers T, Windels EM, Boer PV, Kestemont D, De Meester L, Verstrepen KJ, Verstraeten N, Fauvart M, Michiels J.

Nat Microbiol. 2016 Mar 7;1:16020. doi: 10.1038/nmicrobiol.2016.20.


Stop that Noise and Turn Up the Antisense Transcription.

Steensels J, Verstrepen KJ.

Cell Rep. 2016 Jun 21;15(12):2575-6. doi: 10.1016/j.celrep.2016.06.012.


Characterization of the recombinant Brettanomyces anomalus β-glucosidase and its potential for bioflavouring.

Vervoort Y, Herrera-Malaver B, Mertens S, Guadalupe Medina V, Duitama J, Michiels L, Derdelinckx G, Voordeckers K, Verstrepen KJ.

J Appl Microbiol. 2016 Sep;121(3):721-33. doi: 10.1111/jam.13200. Epub 2016 Jul 27.


Noise and Epigenetic Inheritance of Single-Cell Division Times Influence Population Fitness.

Cerulus B, New AM, Pougach K, Verstrepen KJ.

Curr Biol. 2016 May 9;26(9):1138-47. doi: 10.1016/j.cub.2016.03.010. Epub 2016 Apr 7.


Drosophila screen connects nuclear transport genes to DPR pathology in c9ALS/FTD.

Boeynaems S, Bogaert E, Michiels E, Gijselinck I, Sieben A, Jovičić A, De Baets G, Scheveneels W, Steyaert J, Cuijt I, Verstrepen KJ, Callaerts P, Rousseau F, Schymkowitz J, Cruts M, Van Broeckhoven C, Van Damme P, Gitler AD, Robberecht W, Van Den Bosch L.

Sci Rep. 2016 Feb 12;6:20877. doi: 10.1038/srep20877.


How do yeast cells become tolerant to high ethanol concentrations?

Snoek T, Verstrepen KJ, Voordeckers K.

Curr Genet. 2016 Aug;62(3):475-80. doi: 10.1007/s00294-015-0561-3. Epub 2016 Jan 12. Review.


The impact of yeast fermentation on dough matrix properties.

Rezaei MN, Jayaram VB, Verstrepen KJ, Courtin CM.

J Sci Food Agric. 2016 Aug;96(11):3741-8. doi: 10.1002/jsfa.7562. Epub 2016 Jan 8.


Tuning Chocolate Flavor through Development of Thermotolerant Saccharomyces cerevisiae Starter Cultures with Increased Acetate Ester Production.

Meersman E, Steensels J, Struyf N, Paulus T, Saels V, Mathawan M, Allegaert L, Vrancken G, Verstrepen KJ.

Appl Environ Microbiol. 2015 Nov 20;82(2):732-46. doi: 10.1128/AEM.02556-15. Print 2016 Jan 15.


Adaptation to High Ethanol Reveals Complex Evolutionary Pathways.

Voordeckers K, Kominek J, Das A, Espinosa-Cantú A, De Maeyer D, Arslan A, Van Pee M, van der Zande E, Meert W, Yang Y, Zhu B, Marchal K, DeLuna A, Van Noort V, Jelier R, Verstrepen KJ.

PLoS Genet. 2015 Nov 6;11(11):e1005635. doi: 10.1371/journal.pgen.1005635. eCollection 2015 Nov.


A large set of newly created interspecific Saccharomyces hybrids increases aromatic diversity in lager beers.

Mertens S, Steensels J, Saels V, De Rouck G, Aerts G, Verstrepen KJ.

Appl Environ Microbiol. 2015 Dec;81(23):8202-14. doi: 10.1128/AEM.02464-15. Epub 2015 Sep 25.


Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity.

Gemayel R, Chavali S, Pougach K, Legendre M, Zhu B, Boeynaems S, van der Zande E, Gevaert K, Rousseau F, Schymkowitz J, Babu MM, Verstrepen KJ.

Mol Cell. 2015 Aug 20;59(4):615-27. doi: 10.1016/j.molcel.2015.07.003. Epub 2015 Aug 6.


Experimental evolution of the model eukaryote Saccharomyces cerevisiae yields insight into the molecular mechanisms underlying adaptation.

Voordeckers K, Verstrepen KJ.

Curr Opin Microbiol. 2015 Dec;28:1-9. doi: 10.1016/j.mib.2015.06.018. Epub 2015 Jul 17. Review.


Breeding Strategy To Generate Robust Yeast Starter Cultures for Cocoa Pulp Fermentations.

Meersman E, Steensels J, Paulus T, Struyf N, Saels V, Mathawan M, Koffi J, Vrancken G, Verstrepen KJ.

Appl Environ Microbiol. 2015 Sep;81(18):6166-76. doi: 10.1128/AEM.00133-15. Epub 2015 Jul 6.


Comparative phenomics and targeted use of genomics reveals variation in carbon and nitrogen assimilation among different Brettanomyces bruxellensis strains.

Crauwels S, Van Assche A, de Jonge R, Borneman AR, Verreth C, Troels P, De Samblanx G, Marchal K, Van de Peer Y, Willems KA, Verstrepen KJ, Curtin CD, Lievens B.

Appl Microbiol Biotechnol. 2015 Nov;99(21):9123-34. doi: 10.1007/s00253-015-6769-9. Epub 2015 Jul 2.


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