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Items: 34

1.

Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers.

Chatterjee N, Pazarentzos E, Mayekar MK, Gui P, Allegakoen DV, Hrustanovic G, Olivas V, Lin L, Verschueren E, Johnson JR, Hofree M, Yan JJ, Newton BW, Dollen JV, Earnshaw CH, Flanagan J, Chan E, Asthana S, Ideker T, Wu W, Suzuki J, Barad BA, Kirichok Y, Fraser JS, Weiss WA, Krogan NJ, Tulpule A, Sabnis AJ, Bivona TG.

Cell Rep. 2019 Aug 27;28(9):2317-2330.e8. doi: 10.1016/j.celrep.2019.07.063.

2.

Data-driven spatial filtering for improved measurement of cortical tracking of multiple representations of speech.

Lesenfants D, Vanthornhout J, Verschueren E, Francart T.

J Neural Eng. 2019 Aug 19. doi: 10.1088/1741-2552/ab3c92. [Epub ahead of print]

PMID:
31426053
3.

Predicting individual speech intelligibility from the cortical tracking of acoustic- and phonetic-level speech representations.

Lesenfants D, Vanthornhout J, Verschueren E, Decruy L, Francart T.

Hear Res. 2019 Sep 1;380:1-9. doi: 10.1016/j.heares.2019.05.006. Epub 2019 May 28.

PMID:
31167150
4.

The Gag protein PEG10 binds to RNA and regulates trophoblast stem cell lineage specification.

Abed M, Verschueren E, Budayeva H, Liu P, Kirkpatrick DS, Reja R, Kummerfeld SK, Webster JD, Gierke S, Reichelt M, Anderson KR, Newman RJ, Roose-Girma M, Modrusan Z, Pektas H, Maltepe E, Newton K, Dixit VM.

PLoS One. 2019 Apr 5;14(4):e0214110. doi: 10.1371/journal.pone.0214110. eCollection 2019.

5.

PTCD1 Is Required for Mitochondrial Oxidative-Phosphorylation: Possible Genetic Association with Alzheimer's Disease.

Fleck D, Phu L, Verschueren E, Hinkle T, Reichelt M, Bhangale T, Haley B, Wang Y, Graham R, Kirkpatrick DS, Sheng M, Bingol B.

J Neurosci. 2019 Jun 12;39(24):4636-4656. doi: 10.1523/JNEUROSCI.0116-19.2019. Epub 2019 Apr 4.

PMID:
30948477
6.

Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis.

Hota SK, Johnson JR, Verschueren E, Thomas R, Blotnick AM, Zhu Y, Sun X, Pennacchio LA, Krogan NJ, Bruneau BG.

Development. 2019 Jul 5;146(19). pii: dev174086. doi: 10.1242/dev.174086.

7.

PPARγ Interaction with UBR5/ATMIN Promotes DNA Repair to Maintain Endothelial Homeostasis.

Li CG, Mahon C, Sweeney NM, Verschueren E, Kantamani V, Li D, Hennigs JK, Marciano DP, Diebold I, Abu-Halawa O, Elliott M, Sa S, Guo F, Wang L, Cao A, Guignabert C, Sollier J, Nickel NP, Kaschwich M, Cimprich KA, Rabinovitch M.

Cell Rep. 2019 Jan 29;26(5):1333-1343.e7. doi: 10.1016/j.celrep.2019.01.013.

8.

Neural envelope tracking as a measure of speech understanding in cochlear implant users.

Verschueren E, Somers B, Francart T.

Hear Res. 2019 Mar 1;373:23-31. doi: 10.1016/j.heares.2018.12.004. Epub 2018 Dec 14.

PMID:
30580236
9.

Neural tracking of the speech envelope in cochlear implant users.

Somers B, Verschueren E, Francart T.

J Neural Eng. 2019 Feb;16(1):016003. doi: 10.1088/1741-2552/aae6b9. Epub 2018 Nov 16.

PMID:
30444216
10.

The Self-Assessed Békesy Procedure: Validation of a Method to Measure Intelligibility of Connected Discourse.

Decruy L, Das N, Verschueren E, Francart T.

Trends Hear. 2018 Jan-Dec;22:2331216518802702. doi: 10.1177/2331216518802702.

11.

OTULIN limits cell death and inflammation by deubiquitinating LUBAC.

Heger K, Wickliffe KE, Ndoja A, Zhang J, Murthy A, Dugger DL, Maltzman A, de Sousa E Melo F, Hung J, Zeng Y, Verschueren E, Kirkpatrick DS, Vucic D, Lee WP, Roose-Girma M, Newman RJ, Warming S, Hsiao YC, Kőműves LG, Webster JD, Newton K, Dixit VM.

Nature. 2018 Jul;559(7712):120-124. doi: 10.1038/s41586-018-0256-2. Epub 2018 Jun 27.

PMID:
29950720
12.

Selective autophagy of the adaptor TRIF regulates innate inflammatory signaling.

Samie M, Lim J, Verschueren E, Baughman JM, Peng I, Wong A, Kwon Y, Senbabaoglu Y, Hackney JA, Keir M, Mckenzie B, Kirkpatrick DS, van Lookeren Campagne M, Murthy A.

Nat Immunol. 2018 Mar;19(3):246-254. doi: 10.1038/s41590-017-0042-6. Epub 2018 Jan 22.

PMID:
29358708
13.

Statistical characterization of therapeutic protein modifications.

Tsai TH, Hao Z, Hong Q, Moore B, Stella C, Zhang JH, Chen Y, Kim M, Koulis T, Ryslik GA, Verschueren E, Jacobson F, Haskins WE, Vitek O.

Sci Rep. 2017 Aug 11;7(1):7896. doi: 10.1038/s41598-017-08333-y.

14.

The mTOR Complex Controls HIV Latency.

Besnard E, Hakre S, Kampmann M, Lim HW, Hosmane NN, Martin A, Bassik MC, Verschueren E, Battivelli E, Chan J, Svensson JP, Gramatica A, Conrad RJ, Ott M, Greene WC, Krogan NJ, Siliciano RF, Weissman JS, Verdin E.

Cell Host Microbe. 2016 Dec 14;20(6):785-797. doi: 10.1016/j.chom.2016.11.001.

15.

Non-degradative Ubiquitination of Protein Kinases.

Ball KA, Johnson JR, Lewinski MK, Guatelli J, Verschueren E, Krogan NJ, Jacobson MP.

PLoS Comput Biol. 2016 Jun 2;12(6):e1004898. doi: 10.1371/journal.pcbi.1004898. eCollection 2016 Jun.

16.

Meta- and Orthogonal Integration of Influenza "OMICs" Data Defines a Role for UBR4 in Virus Budding.

Tripathi S, Pohl MO, Zhou Y, Rodriguez-Frandsen A, Wang G, Stein DA, Moulton HM, DeJesus P, Che J, Mulder LC, Yángüez E, Andenmatten D, Pache L, Manicassamy B, Albrecht RA, Gonzalez MG, Nguyen Q, Brass A, Elledge S, White M, Shapira S, Hacohen N, Karlas A, Meyer TF, Shales M, Gatorano A, Johnson JR, Jang G, Johnson T, Verschueren E, Sanders D, Krogan N, Shaw M, König R, Stertz S, García-Sastre A, Chanda SK.

Cell Host Microbe. 2015 Dec 9;18(6):723-35. doi: 10.1016/j.chom.2015.11.002.

17.

Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection.

Mirrashidi KM, Elwell CA, Verschueren E, Johnson JR, Frando A, Von Dollen J, Rosenberg O, Gulbahce N, Jang G, Johnson T, Jäger S, Gopalakrishnan AM, Sherry J, Dunn JD, Olive A, Penn B, Shales M, Cox JS, Starnbach MN, Derre I, Valdivia R, Krogan NJ, Engel J.

Cell Host Microbe. 2015 Jul 8;18(1):109-21. doi: 10.1016/j.chom.2015.06.004. Epub 2015 Jun 25.

18.

Evolution of the SH3 Domain Specificity Landscape in Yeasts.

Verschueren E, Spiess M, Gkourtsa A, Avula T, Landgraf C, Mancilla VT, Huber A, Volkmer R, Winsor B, Serrano L, Hochstenbach F, Distel B.

PLoS One. 2015 Jun 11;10(6):e0129229. doi: 10.1371/journal.pone.0129229. eCollection 2015.

19.

Pharmacological dimerization and activation of the exchange factor eIF2B antagonizes the integrated stress response.

Sidrauski C, Tsai JC, Kampmann M, Hearn BR, Vedantham P, Jaishankar P, Sokabe M, Mendez AS, Newton BW, Tang EL, Verschueren E, Johnson JR, Krogan NJ, Fraser CS, Weissman JS, Renslo AR, Walter P.

Elife. 2015 Apr 15;4:e07314. doi: 10.7554/eLife.07314.

20.

Scoring Large-Scale Affinity Purification Mass Spectrometry Datasets with MiST.

Verschueren E, Von Dollen J, Cimermancic P, Gulbahce N, Sali A, Krogan NJ.

Curr Protoc Bioinformatics. 2015 Mar 9;49:8.19.1-16. doi: 10.1002/0471250953.bi0819s49.

21.

A combined proteomics/genomics approach links hepatitis C virus infection with nonsense-mediated mRNA decay.

Ramage HR, Kumar GR, Verschueren E, Johnson JR, Von Dollen J, Johnson T, Newton B, Shah P, Horner J, Krogan NJ, Ott M.

Mol Cell. 2015 Jan 22;57(2):329-340. doi: 10.1016/j.molcel.2014.12.028.

22.

Global mapping of herpesvirus-host protein complexes reveals a transcription strategy for late genes.

Davis ZH, Verschueren E, Jang GM, Kleffman K, Johnson JR, Park J, Von Dollen J, Maher MC, Johnson T, Newton W, Jäger S, Shales M, Horner J, Hernandez RD, Krogan NJ, Glaunsinger BA.

Mol Cell. 2015 Jan 22;57(2):349-60. doi: 10.1016/j.molcel.2014.11.026. Epub 2014 Dec 24.

23.

Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions.

Morris JH, Knudsen GM, Verschueren E, Johnson JR, Cimermancic P, Greninger AL, Pico AR.

Nat Protoc. 2014 Nov;9(11):2539-54. doi: 10.1038/nprot.2014.164. Epub 2014 Oct 2.

24.

Integration of protein abundance and structure data reveals competition in the ErbB signaling network.

Kiel C, Verschueren E, Yang JS, Serrano L.

Sci Signal. 2013 Dec 17;6(306):ra109. doi: 10.1126/scisignal.2004560.

PMID:
24345680
25.

Protein-peptide complex prediction through fragment interaction patterns.

Verschueren E, Vanhee P, Rousseau F, Schymkowitz J, Serrano L.

Structure. 2013 May 7;21(5):789-97. doi: 10.1016/j.str.2013.02.023. Epub 2013 Apr 11.

26.

Protein design with fragment databases.

Verschueren E, Vanhee P, van der Sloot AM, Serrano L, Rousseau F, Schymkowitz J.

Curr Opin Struct Biol. 2011 Aug;21(4):452-9. doi: 10.1016/j.sbi.2011.05.002. Epub 2011 Jun 16. Review.

PMID:
21684149
27.

The multiple-specificity landscape of modular peptide recognition domains.

Gfeller D, Butty F, Wierzbicka M, Verschueren E, Vanhee P, Huang H, Ernst A, Dar N, Stagljar I, Serrano L, Sidhu SS, Bader GD, Kim PM.

Mol Syst Biol. 2011 Apr 26;7:484. doi: 10.1038/msb.2011.18.

28.

Computational design of peptide ligands.

Vanhee P, van der Sloot AM, Verschueren E, Serrano L, Rousseau F, Schymkowitz J.

Trends Biotechnol. 2011 May;29(5):231-9. doi: 10.1016/j.tibtech.2011.01.004. Epub 2011 Feb 12. Review.

PMID:
21316780
29.

Enhanced SnapShot: Macromolecular machines.

Bertero MG, Verschueren E, Paetzold B, Serrrano L.

Cell. 2010 Nov 12;143(4):652, 652.e1. doi: 10.1016/j.cell.2010.10.035. No abstract available.

30.

BriX: a database of protein building blocks for structural analysis, modeling and design.

Vanhee P, Verschueren E, Baeten L, Stricher F, Serrano L, Rousseau F, Schymkowitz J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D435-42. doi: 10.1093/nar/gkq972. Epub 2010 Oct 23.

31.

Protein-peptide interactions adopt the same structural motifs as monomeric protein folds.

Vanhee P, Stricher F, Baeten L, Verschueren E, Lenaerts T, Serrano L, Rousseau F, Schymkowitz J.

Structure. 2009 Aug 12;17(8):1128-36. doi: 10.1016/j.str.2009.06.013.

32.

Influence of stearylamine and dicetylphosphate on the physical properties of submicron O/W emulsions.

Mbela N, Verschueren E, Ludwig A.

J Pharm Belg. 1998 Mar-Apr;53(2):81-6.

PMID:
9609968
33.
34.

A double-blind pediatric evaluation of levamisole in the prevention of recurrent upper respiratory tract infections.

Van Eygen M, Dils F, Gillerot J, Verschueren E.

Eur J Pediatr. 1979 Jun 28;131(3):147-53.

PMID:
477676

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