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Items: 10

1.

The interdependence of gene-regulatory elements and the 3D genome.

Vermunt MW, Zhang D, Blobel GA.

J Cell Biol. 2018 Nov 15. pii: jcb.201809040. doi: 10.1083/jcb.201809040. [Epub ahead of print] Review.

PMID:
30442643
2.

Intracranial Aneurysm-Associated Single-Nucleotide Polymorphisms Alter Regulatory DNA in the Human Circle of Willis.

Laarman MD, Vermunt MW, Kleinloog R, de Boer-Bergsma JJ, Brain Bank N, Rinkel GJE, Creyghton MP, Mokry M, Bakkers J, Ruigrok YM.

Stroke. 2018 Feb;49(2):447-453. doi: 10.1161/STROKEAHA.117.018557. Epub 2018 Jan 4.

PMID:
29301971
3.

Tomo-Seq Identifies SOX9 as a Key Regulator of Cardiac Fibrosis During Ischemic Injury.

Lacraz GPA, Junker JP, Gladka MM, Molenaar B, Scholman KT, Vigil-Garcia M, Versteeg D, de Ruiter H, Vermunt MW, Creyghton MP, Huibers MMH, de Jonge N, van Oudenaarden A, van Rooij E.

Circulation. 2017 Oct 10;136(15):1396-1409. doi: 10.1161/CIRCULATIONAHA.117.027832. Epub 2017 Jul 19.

PMID:
28724751
4.

Circadian networks in human embryonic stem cell-derived cardiomyocytes.

Dierickx P, Vermunt MW, Muraro MJ, Creyghton MP, Doevendans PA, van Oudenaarden A, Geijsen N, Van Laake LW.

EMBO Rep. 2017 Jul;18(7):1199-1212. doi: 10.15252/embr.201743897. Epub 2017 May 23.

5.

Transcriptional Dynamics at Brain Enhancers: from Functional Specialization to Neurodegeneration.

Vermunt MW, Creyghton MP.

Curr Neurol Neurosci Rep. 2016 Oct;16(10):94. doi: 10.1007/s11910-016-0689-7. Review.

6.

Epigenomic annotation of gene regulatory alterations during evolution of the primate brain.

Vermunt MW, Tan SC, Castelijns B, Geeven G, Reinink P, de Bruijn E, Kondova I, Persengiev S; Netherlands Brain Bank, Bontrop R, Cuppen E, de Laat W, Creyghton MP.

Nat Neurosci. 2016 Mar;19(3):494-503. doi: 10.1038/nn.4229. Epub 2016 Jan 25.

PMID:
26807951
7.

Local compartment changes and regulatory landscape alterations in histone H1-depleted cells.

Geeven G, Zhu Y, Kim BJ, Bartholdy BA, Yang SM, Macfarlan TS, Gifford WD, Pfaff SL, Verstegen MJ, Pinto H, Vermunt MW, Creyghton MP, Wijchers PJ, Stamatoyannopoulos JA, Skoultchi AI, de Laat W.

Genome Biol. 2015 Dec 23;16:289. doi: 10.1186/s13059-015-0857-0.

8.

Large-scale identification of coregulated enhancer networks in the adult human brain.

Vermunt MW, Reinink P, Korving J, de Bruijn E, Creyghton PM, Basak O, Geeven G, Toonen PW, Lansu N, Meunier C, van Heesch S; Netherlands Brain Bank, Clevers H, de Laat W, Cuppen E, Creyghton MP.

Cell Rep. 2014 Oct 23;9(2):767-79. doi: 10.1016/j.celrep.2014.09.023. Epub 2014 Oct 16.

9.

Histone acetylation in astrocytes suppresses GFAP and stimulates a reorganization of the intermediate filament network.

Kanski R, Sneeboer MA, van Bodegraven EJ, Sluijs JA, Kropff W, Vermunt MW, Creyghton MP, De Filippis L, Vescovi A, Aronica E, van Tijn P, van Strien ME, Hol EM.

J Cell Sci. 2014 Oct 15;127(Pt 20):4368-80. doi: 10.1242/jcs.145912. Epub 2014 Aug 15.

10.

NIPP1 maintains EZH2 phosphorylation and promoter occupancy at proliferation-related target genes.

Minnebo N, Görnemann J, O'Connell N, Van Dessel N, Derua R, Vermunt MW, Page R, Beullens M, Peti W, Van Eynde A, Bollen M.

Nucleic Acids Res. 2013 Jan;41(2):842-54. doi: 10.1093/nar/gks1255. Epub 2012 Dec 13.

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