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Items: 1 to 50 of 194

1.

Transcription-coupled nucleotide excision repair is coordinated by ubiquitin and SUMO in response to ultraviolet irradiation.

Liebelt F, Schimmel J, Verlaan-de Vries M, Klemann E, van Royen ME, van der Weegen Y, Luijsterburg MS, Mullenders LH, Pines A, Vermeulen W, Vertegaal ACO.

Nucleic Acids Res. 2019 Nov 13. pii: gkz977. doi: 10.1093/nar/gkz977. [Epub ahead of print]

PMID:
31722399
2.

The DNA damage response to transcription stress.

Lans H, Hoeijmakers JHJ, Vermeulen W, Marteijn JA.

Nat Rev Mol Cell Biol. 2019 Sep 26. doi: 10.1038/s41580-019-0169-4. [Epub ahead of print] Review.

PMID:
31558824
3.

Cell-type specific concentration regulation of the basal transcription factor TFIIH in XPBy/y mice model.

Donnio LM, Miquel C, Vermeulen W, Giglia-Mari G, Mari PO.

Cancer Cell Int. 2019 Sep 10;19:237. doi: 10.1186/s12935-019-0945-4. eCollection 2019.

4.

ERCC1-XPF targeting to psoralen-DNA crosslinks depends on XPA and FANCD2.

Sabatella M, Pines A, Slyskova J, Vermeulen W, Lans H.

Cell Mol Life Sci. 2019 Aug 7. doi: 10.1007/s00018-019-03264-5. [Epub ahead of print]

PMID:
31392348
5.

Bi-allelic TARS Mutations Are Associated with Brittle Hair Phenotype.

Theil AF, Botta E, Raams A, Smith DEC, Mendes MI, Caligiuri G, Giachetti S, Bione S, Carriero R, Liberi G, Zardoni L, Swagemakers SMA, Salomons GS, Sarasin A, Lehmann A, van der Spek PJ, Ogi T, Hoeijmakers JHJ, Vermeulen W, Orioli D.

Am J Hum Genet. 2019 Aug 1;105(2):434-440. doi: 10.1016/j.ajhg.2019.06.017.

PMID:
31374204
6.

SWI/SNF: Complex complexes in genome stability and cancer.

Ribeiro-Silva C, Vermeulen W, Lans H.

DNA Repair (Amst). 2019 May;77:87-95. doi: 10.1016/j.dnarep.2019.03.007. Epub 2019 Mar 15. Review.

PMID:
30897376
7.

Quantification of corruption in preventative cost-based S-LCA: a contribution to the Oiconomy project.

Croes PR, Vermeulen WJV.

Int J Life Cycle Assess. 2019;24(1):142-159. doi: 10.1007/s11367-018-1507-z. Epub 2018 Sep 6.

8.

HR23B pathology preferentially co-localizes with p62, pTDP-43 and poly-GA in C9ORF72-linked frontotemporal dementia and amyotrophic lateral sclerosis.

Riemslagh FW, Lans H, Seelaar H, Severijnen LWFM, Melhem S, Vermeulen W, Aronica E, Pasterkamp RJ, van Swieten JC, Willemsen R.

Acta Neuropathol Commun. 2019 Mar 13;7(1):39. doi: 10.1186/s40478-019-0694-6.

9.

Cysteinyl-tRNA Synthetase Mutations Cause a Multi-System, Recessive Disease That Includes Microcephaly, Developmental Delay, and Brittle Hair and Nails.

Kuo ME, Theil AF, Kievit A, Malicdan MC, Introne WJ, Christian T, Verheijen FW, Smith DEC, Mendes MI, Hussaarts-Odijk L, van der Meijden E, van Slegtenhorst M, Wilke M, Vermeulen W, Raams A, Groden C, Shimada S, Meyer-Schuman R, Hou YM, Gahl WA, Antonellis A, Salomons GS, Mancini GMS.

Am J Hum Genet. 2019 Mar 7;104(3):520-529. doi: 10.1016/j.ajhg.2019.01.006. Epub 2019 Feb 26.

10.

DNA damage sensitivity of SWI/SNF-deficient cells depends on TFIIH subunit p62/GTF2H1.

Ribeiro-Silva C, Aydin ÖZ, Mesquita-Ribeiro R, Slyskova J, Helfricht A, Marteijn JA, Hoeijmakers JHJ, Lans H, Vermeulen W.

Nat Commun. 2018 Oct 4;9(1):4067. doi: 10.1038/s41467-018-06402-y.

11.

Incidence and Clearance of Anal High-risk Human Papillomavirus Infections and Their Determinants Over 5 Years Among Human Immunodeficiency Virus-negative Men Who Have Sex With Men.

Marra E, Kovaleva A, Bruisten SM, Vermeulen W, Boyd A, Schim van der Loeff MF.

Clin Infect Dis. 2019 Apr 24;68(9):1556-1565. doi: 10.1093/cid/ciy738.

PMID:
30169621
12.

Repair protein persistence at DNA lesions characterizes XPF defect with Cockayne syndrome features.

Sabatella M, Theil AF, Ribeiro-Silva C, Slyskova J, Thijssen K, Voskamp C, Lans H, Vermeulen W.

Nucleic Acids Res. 2018 Oct 12;46(18):9563-9577. doi: 10.1093/nar/gky774.

13.

Base and nucleotide excision repair facilitate resolution of platinum drugs-induced transcription blockage.

Slyskova J, Sabatella M, Ribeiro-Silva C, Stok C, Theil AF, Vermeulen W, Lans H.

Nucleic Acids Res. 2018 Oct 12;46(18):9537-9549. doi: 10.1093/nar/gky764.

14.

DNA damage-induced replication stress results in PA200-proteasome-mediated degradation of acetylated histones.

Mandemaker IK, Geijer ME, Kik I, Bezstarosti K, Rijkers E, Raams A, Janssens RC, Lans H, Hoeijmakers JH, Demmers JA, Vermeulen W, Marteijn JA.

EMBO Rep. 2018 Oct;19(10). pii: e45566. doi: 10.15252/embr.201745566. Epub 2018 Aug 13.

15.

The transcription-coupled DNA repair-initiating protein CSB promotes XRCC1 recruitment to oxidative DNA damage.

Menoni H, Wienholz F, Theil AF, Janssens RC, Lans H, Campalans A, Radicella JP, Marteijn JA, Vermeulen W.

Nucleic Acids Res. 2018 Sep 6;46(15):7747-7756. doi: 10.1093/nar/gky579.

16.

TRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A.

Pines A, Dijk M, Makowski M, Meulenbroek EM, Vrouwe MG, van der Weegen Y, Baltissen M, French PJ, van Royen ME, Luijsterburg MS, Mullenders LH, Vermeulen M, Vermeulen W, Pannu NS, van Attikum H.

Nat Commun. 2018 Mar 12;9(1):1040. doi: 10.1038/s41467-018-03484-6.

17.

DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway.

Mandemaker IK, van Cuijk L, Janssens RC, Lans H, Bezstarosti K, Hoeijmakers JH, Demmers JA, Vermeulen W, Marteijn JA.

Sci Rep. 2017 Nov 10;7(1):15353. doi: 10.1038/s41598-017-15194-y.

18.

Trichothiodystrophy causative TFIIEβ mutation affects transcription in highly differentiated tissue.

Theil AF, Mandemaker IK, van den Akker E, Swagemakers SMA, Raams A, Wüst T, Marteijn JA, Giltay JC, Colombijn RM, Moog U, Kotzaeridou U, Ghazvini M, von Lindern M, Hoeijmakers JHJ, Jaspers NGJ, van der Spek PJ, Vermeulen W.

Hum Mol Genet. 2017 Dec 1;26(23):4689-4698. doi: 10.1093/hmg/ddx351.

19.

Monitoring therapy success of urogenital Chlamydia trachomatis infections in women: A prospective observational cohort study.

Versteeg B, Bruisten SM, Heijman T, Vermeulen W, van Rooijen MS, van Dam AP, Schim van der Loeff MF, de Vries HJC, Scholing M.

PLoS One. 2017 Sep 21;12(9):e0185295. doi: 10.1371/journal.pone.0185295. eCollection 2017.

20.

Noncanonical ATM Activation and Signaling in Response to Transcription-Blocking DNA Damage.

Marteijn JA, Vermeulen W, Tresini M.

Methods Mol Biol. 2017;1599:347-361. doi: 10.1007/978-1-4939-6955-5_25.

PMID:
28477131
21.

Origin of the E/Z Selectivity in the Synthesis of Tetrasubstituted Olefins by Wittig Reaction of α-Fluorophosphonium Ylides: An Explanation for the Low Stereoselectivity Observed in Reactions of α-Alkoxy Aldehydes.

Depré D, Vermeulen WA, Lang Y, Dubois J, Vandevivere J, Vandermeersch J, Huang L, Robiette R.

Org Lett. 2017 Mar 17;19(6):1414-1417. doi: 10.1021/acs.orglett.7b00344. Epub 2017 Mar 7.

PMID:
28267343
22.
23.

A cross-sectional study on the concordance between vaginal HPV DNA detection and type-specific antibodies in a multi-ethnic cohort of women from Amsterdam, the Netherlands - the HELIUS study.

Kovaleva A, Alberts CJ, Waterboer T, Michel A, Snijder MB, Vermeulen W, Coyer L, Prins M, Schim van der Loeff M.

BMC Infect Dis. 2016 Sep 22;16(1):502.

24.

Vaginal high-risk human papillomavirus infection in a cross-sectional study among women of six different ethnicities in Amsterdam, the Netherlands: the HELIUS study.

Alberts CJ, Vos RA, Borgdorff H, Vermeulen W, van Bergen J, Bruisten SM, Geerlings SE, Snijder MB, van Houdt R, Morré SA, de Vries HJ, van de Wijgert JH, Prins M, Schim van der Loeff MF.

Sex Transm Infect. 2016 Dec;92(8):611-618. doi: 10.1136/sextrans-2015-052397. Epub 2016 May 17.

PMID:
27188273
25.

A ubiquitylation site in Cockayne syndrome B required for repair of oxidative DNA damage, but not for transcription-coupled nucleotide excision repair.

Ranes M, Boeing S, Wang Y, Wienholz F, Menoni H, Walker J, Encheva V, Chakravarty P, Mari PO, Stewart A, Giglia-Mari G, Snijders AP, Vermeulen W, Svejstrup JQ.

Nucleic Acids Res. 2016 Jun 20;44(11):5246-55. doi: 10.1093/nar/gkw216. Epub 2016 Apr 7.

26.

Bidirectional coupling of splicing and ATM signaling in response to transcription-blocking DNA damage.

Tresini M, Marteijn JA, Vermeulen W.

RNA Biol. 2016;13(3):272-8. doi: 10.1080/15476286.2016.1142039. Epub 2016 Feb 25.

27.

Check, Check …Triple Check: Multi-Step DNA Lesion Identification by Nucleotide Excision Repair.

Marteijn JA, Hoeijmakers JH, Vermeulen W.

Mol Cell. 2015 Sep 17;59(6):885-6. doi: 10.1016/j.molcel.2015.09.007.

28.

SUMO and ubiquitin-dependent XPC exchange drives nucleotide excision repair.

van Cuijk L, van Belle GJ, Turkyilmaz Y, Poulsen SL, Janssens RC, Theil AF, Sabatella M, Lans H, Mailand N, Houtsmuller AB, Vermeulen W, Marteijn JA.

Nat Commun. 2015 Jul 7;6:7499. doi: 10.1038/ncomms8499.

29.

The core spliceosome as target and effector of non-canonical ATM signalling.

Tresini M, Warmerdam DO, Kolovos P, Snijder L, Vrouwe MG, Demmers JA, van IJcken WF, Grosveld FG, Medema RH, Hoeijmakers JH, Mullenders LH, Vermeulen W, Marteijn JA.

Nature. 2015 Jul 2;523(7558):53-8. doi: 10.1038/nature14512. Epub 2015 Jun 24.

30.

Tissue specific response to DNA damage: C. elegans as role model.

Lans H, Vermeulen W.

DNA Repair (Amst). 2015 Aug;32:141-148. doi: 10.1016/j.dnarep.2015.04.025. Epub 2015 May 1. Review.

PMID:
25957488
31.

Pollitt syndrome patients carry mutation in TTDN1.

Swagemakers SM, Jaspers NG, Raams A, Heijsman D, Vermeulen W, Troelstra C, Kremer A, Lincoln SE, Tearle R, Hoeijmakers JH, van der Spek PJ.

Meta Gene. 2014 Aug 30;2:616-8. doi: 10.1016/j.mgene.2014.08.001. eCollection 2014 Dec.

32.

ISWI chromatin remodeling complexes in the DNA damage response.

Aydin ÖZ, Vermeulen W, Lans H.

Cell Cycle. 2014;13(19):3016-25. doi: 10.4161/15384101.2014.956551.

33.

Differential binding kinetics of replication protein A during replication and the pre- and post-incision steps of nucleotide excision repair.

Gourdin AM, van Cuijk L, Tresini M, Luijsterburg MS, Nigg AL, Giglia-Mari G, Houtsmuller AB, Vermeulen W, Marteijn JA.

DNA Repair (Amst). 2014 Dec;24:46-56. doi: 10.1016/j.dnarep.2014.09.013. Epub 2014 Oct 16.

PMID:
25453469
34.

The effect of chemically induced colitis, psychological stress and their combination on visceral pain in female Wistar rats.

Deiteren A, Vermeulen W, Moreels TG, Pelckmans PA, De Man JG, De Winter BY.

Stress. 2014 Sep;17(5):431-44. doi: 10.3109/10253890.2014.951034.

PMID:
25089934
35.

Ubiquitin at work: the ubiquitous regulation of the damage recognition step of NER.

van Cuijk L, Vermeulen W, Marteijn JA.

Exp Cell Res. 2014 Nov 15;329(1):101-9. doi: 10.1016/j.yexcr.2014.07.018. Epub 2014 Jul 22. Review.

PMID:
25062985
36.

TTDA: big impact of a small protein.

Theil AF, Hoeijmakers JH, Vermeulen W.

Exp Cell Res. 2014 Nov 15;329(1):61-8. doi: 10.1016/j.yexcr.2014.07.008. Epub 2014 Jul 10. Review.

PMID:
25016283
37.

Human ISWI complexes are targeted by SMARCA5 ATPase and SLIDE domains to help resolve lesion-stalled transcription.

Aydin ÖZ, Marteijn JA, Ribeiro-Silva C, Rodríguez López A, Wijgers N, Smeenk G, van Attikum H, Poot RA, Vermeulen W, Lans H.

Nucleic Acids Res. 2014 Jul;42(13):8473-85. doi: 10.1093/nar/gku565. Epub 2014 Jul 2.

38.

Understanding nucleotide excision repair and its roles in cancer and ageing.

Marteijn JA, Lans H, Vermeulen W, Hoeijmakers JH.

Nat Rev Mol Cell Biol. 2014 Jul;15(7):465-81. doi: 10.1038/nrm3822. Review.

PMID:
24954209
39.

Gearing up chromatin: A role for chromatin remodeling during the transcriptional restart upon DNA damage.

Mandemaker IK, Vermeulen W, Marteijn JA.

Nucleus. 2014 May-Jun;5(3):203-10. doi: 10.4161/nucl.29085. Epub 2014 May 8. Review.

40.

Neuroanatomy of lower gastrointestinal pain disorders.

Vermeulen W, De Man JG, Pelckmans PA, De Winter BY.

World J Gastroenterol. 2014 Jan 28;20(4):1005-20. doi: 10.3748/wjg.v20.i4.1005. Review.

41.

ELL, a novel TFIIH partner, is involved in transcription restart after DNA repair.

Mourgues S, Gautier V, Lagarou A, Bordier C, Mourcet A, Slingerland J, Kaddoum L, Coin F, Vermeulen W, Gonzales de Peredo A, Monsarrat B, Mari PO, Giglia-Mari G.

Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17927-32. doi: 10.1073/pnas.1305009110. Epub 2013 Oct 14.

42.

DNA damage leads to progressive replicative decline but extends the life span of long-lived mutant animals.

Lans H, Lindvall JM, Thijssen K, Karambelas AE, Cupac D, Fensgård O, Jansen G, Hoeijmakers JH, Nilsen H, Vermeulen W.

Cell Death Differ. 2013 Dec;20(12):1709-18. doi: 10.1038/cdd.2013.126. Epub 2013 Sep 6.

43.

Enhanced chromatin dynamics by FACT promotes transcriptional restart after UV-induced DNA damage.

Dinant C, Ampatziadis-Michailidis G, Lans H, Tresini M, Lagarou A, Grosbart M, Theil AF, van Cappellen WA, Kimura H, Bartek J, Fousteri M, Houtsmuller AB, Vermeulen W, Marteijn JA.

Mol Cell. 2013 Aug 22;51(4):469-79. doi: 10.1016/j.molcel.2013.08.007.

44.

Mammalian transcription-coupled excision repair.

Vermeulen W, Fousteri M.

Cold Spring Harb Perspect Biol. 2013 Aug 1;5(8):a012625. doi: 10.1101/cshperspect.a012625. Review.

45.

Erythropoietic defect associated with reduced cell proliferation in mice lacking the 26S proteasome shuttling factor Rad23b.

Bergink S, Theil AF, Toussaint W, De Cuyper IM, Kulu DI, Clapes T, van der Linden R, Demmers JA, Mul EP, van Alphen FP, Marteijn JA, van Gent T, Maas A, Robin C, Philipsen S, Vermeulen W, Mitchell JR, Gutiérrez L.

Mol Cell Biol. 2013 Oct;33(19):3879-92. doi: 10.1128/MCB.05772-11. Epub 2013 Jul 29.

46.

UVSSA and USP7, a new couple in transcription-coupled DNA repair.

Schwertman P, Vermeulen W, Marteijn JA.

Chromosoma. 2013 Aug;122(4):275-84. doi: 10.1007/s00412-013-0420-2. Epub 2013 Jun 13. Review.

47.

An immunoaffinity purification method for the proteomic analysis of ubiquitinated protein complexes.

Schwertman P, Bezstarosti K, Laffeber C, Vermeulen W, Demmers JA, Marteijn JA.

Anal Biochem. 2013 Sep 15;440(2):227-36. doi: 10.1016/j.ab.2013.05.020. Epub 2013 Jun 3.

48.

Global regulation of promoter melting in naive lymphocytes.

Kouzine F, Wojtowicz D, Yamane A, Resch W, Kieffer-Kwon KR, Bandle R, Nelson S, Nakahashi H, Awasthi P, Feigenbaum L, Menoni H, Hoeijmakers J, Vermeulen W, Ge H, Przytycka TM, Levens D, Casellas R.

Cell. 2013 May 23;153(5):988-99. doi: 10.1016/j.cell.2013.04.033.

49.

Disruption of TTDA results in complete nucleotide excision repair deficiency and embryonic lethality.

Theil AF, Nonnekens J, Steurer B, Mari PO, de Wit J, Lemaitre C, Marteijn JA, Raams A, Maas A, Vermeij M, Essers J, Hoeijmakers JH, Giglia-Mari G, Vermeulen W.

PLoS Genet. 2013 Apr;9(4):e1003431. doi: 10.1371/journal.pgen.1003431. Epub 2013 Apr 18.

50.

Colonoscopy and µPET/CT are valid techniques to monitor inflammation in the adoptive transfer colitis model in mice.

Heylen M, Deleye S, De Man JG, Ruyssers NE, Vermeulen W, Stroobants S, Pelckmans PA, Moreels TG, Staelens S, De Winter BY.

Inflamm Bowel Dis. 2013 Apr;19(5):967-76. doi: 10.1097/MIB.0b013e3182802c7c.

PMID:
23407045

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