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Items: 48

1.

Validation of a universal set of primers to study animal-associated microeukaryotic communities.

Del Campo J, Pons MJ, Herranz M, Wakeman KC, Del Valle J, Vermeij MJA, Leander BS, Keeling PJ.

Environ Microbiol. 2019 Jul 6. doi: 10.1111/1462-2920.14733. [Epub ahead of print]

PMID:
31278828
2.

Historical changes (1905-present) in catch size and composition reflect altering fisheries practices on a small Caribbean island.

Vermeij MJA, Latijnhouwers KRW, Dilrosun F, Chamberland VF, Dubé CE, Van Buurt G, Debrot AO.

PLoS One. 2019 Jun 13;14(6):e0217589. doi: 10.1371/journal.pone.0217589. eCollection 2019.

3.

Diel population and functional synchrony of microbial communities on coral reefs.

Kelly LW, Nelson CE, Haas AF, Naliboff DS, Calhoun S, Carlson CA, Edwards RA, Fox MD, Hatay M, Johnson MD, Kelly ELA, Lim YW, Macherla S, Quinlan ZA, Silva GGZ, Vermeij MJA, Zgliczynski B, Sandin SA, Smith JE, Rohwer F.

Nat Commun. 2019 Apr 12;10(1):1691. doi: 10.1038/s41467-019-09419-z.

4.

A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes.

Kwong WK, Del Campo J, Mathur V, Vermeij MJA, Keeling PJ.

Nature. 2019 Apr;568(7750):103-107. doi: 10.1038/s41586-019-1072-z. Epub 2019 Apr 3.

PMID:
30944491
5.

Acquisition of obligate mutualist symbionts during the larval stage is not beneficial for a coral host.

Hartmann AC, Marhaver KL, Klueter A, Lovci MT, Closek CJ, Diaz E, Chamberland VF, Archer FI, Deheyn DD, Vermeij MJA, Medina M.

Mol Ecol. 2019 Jan;28(1):141-155. doi: 10.1111/mec.14967.

PMID:
30506836
6.

High Prevalence and Endemism of Trypanosomatids on a Small Caribbean Island.

Votýpka J, Kment P, Kriegová E, Vermeij MJA, Keeling PJ, Yurchenko V, Lukeš J.

J Eukaryot Microbiol. 2019 Jul;66(4):600-607. doi: 10.1111/jeu.12704. Epub 2018 Dec 18.

PMID:
30480347
7.

Ecological assessment of the marine ecosystems of Barbuda, West Indies: Using rapid scientific assessment to inform ocean zoning and fisheries management.

Ruttenberg B, Caselle JE, Estep AJ, Johnson AE, Marhaver KL, Richter LJ, Sandin SA, Vermeij MJA, Smith JE, Grenda D, Cannon A.

PLoS One. 2018 Jan 8;13(1):e0189355. doi: 10.1371/journal.pone.0189355. eCollection 2018.

8.

New Seeding Approach Reduces Costs and Time to Outplant Sexually Propagated Corals for Reef Restoration.

Chamberland VF, Petersen D, Guest JR, Petersen U, Brittsan M, Vermeij MJA.

Sci Rep. 2017 Dec 22;7(1):18076. doi: 10.1038/s41598-017-17555-z.

9.

Meta-mass shift chemical profiling of metabolomes from coral reefs.

Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11685-11690. doi: 10.1073/pnas.1710248114. Epub 2017 Oct 12.

10.

Costs and benefits of maternally inherited algal symbionts in coral larvae.

Chamberland VF, Latijnhouwers KRW, Huisman J, Hartmann AC, Vermeij MJA.

Proc Biol Sci. 2017 Jun 28;284(1857). pii: 20170852. doi: 10.1098/rspb.2017.0852.

11.

Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia.

Dubé CE, Mercière A, Vermeij MJ, Planes S.

PLoS One. 2017 Mar 8;12(3):e0173513. doi: 10.1371/journal.pone.0173513. eCollection 2017.

12.

Corrigendum: Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Nov 3;539(7627):123. doi: 10.1038/nature19335. Epub 2016 Aug 24. No abstract available.

PMID:
27556939
13.

Correction to 'Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence'.

Quinn RA, Vermeij MJ, Hartmann AC, d'Auriac IG, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F.

Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161485. doi: 10.1098/rspb.2016.1485. No abstract available.

14.

Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse.

den Haan J, Huisman J, Brocke HJ, Goehlich H, Latijnhouwers KR, van Heeringen S, Honcoop SA, Bleyenberg TE, Schouten S, Cerli C, Hoitinga L, Vermeij MJ, Visser PM.

Sci Rep. 2016 Jun 29;6:28821. doi: 10.1038/srep28821.

15.

Competitive interactions between corals and turf algae depend on coral colony form.

Swierts T, Vermeij MJ.

PeerJ. 2016 May 10;4:e1984. doi: 10.7717/peerj.1984. eCollection 2016.

16.

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence.

Quinn RA, Vermeij MJ, Hartmann AC, Galtier d'Auriac I, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F.

Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160469. doi: 10.1098/rspb.2016.0469. Erratum in: Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161485. doi: 10.1098/rspb.2016.1485.

17.

Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae.

Mueller B, den Haan J, Visser PM, Vermeij MJ, van Duyl FC.

Sci Rep. 2016 Mar 22;6:23248. doi: 10.1038/srep23248.

18.

Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16. Erratum in: Nature. 2016 Nov 3;539(7627):123.

PMID:
26982729
19.

Decadal comparison of a diminishing coral community: a study using demographics to advance inferences of community status.

Miller M, Williams DE, Huntington BE, Piniak GA, Vermeij MJ.

PeerJ. 2016 Jan 28;4:e1643. doi: 10.7717/peerj.1643. eCollection 2016.

20.

Biofouling of inlet pipes affects water quality in running seawater aquaria and compromises sponge cell proliferation.

Alexander BE, Mueller B, Vermeij MJA, van der Geest HHG, de Goeij JM.

PeerJ. 2015 Dec 7;3:e1430. doi: 10.7717/peerj.1430. eCollection 2015.

21.

Can we measure beauty? Computational evaluation of coral reef aesthetics.

Haas AF, Guibert M, Foerschner A, Co T, Calhoun S, George E, Hatay M, Dinsdale E, Sandin SA, Smith JE, Vermeij MJ, Felts B, Dustan P, Salamon P, Rohwer F.

PeerJ. 2015 Nov 10;3:e1390. doi: 10.7717/peerj.1390. eCollection 2015.

22.

Stable and sporadic symbiotic communities of coral and algal holobionts.

Hester ER, Barott KL, Nulton J, Vermeij MJ, Rohwer FL.

ISME J. 2016 May;10(5):1157-69. doi: 10.1038/ismej.2015.190. Epub 2015 Nov 10.

23.

Reproductive natural history and successful juvenile propagation of the threatened Caribbean pillar coral Dendrogyra cylindrus.

Marhaver KL, Vermeij MJ, Medina MM.

BMC Ecol. 2015 Mar 16;15:9. doi: 10.1186/s12898-015-0039-7.

24.

Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures.

Garg N, Kapono C, Lim YW, Koyama N, Vermeij MJ, Conrad D, Rohwer F, Dorrestein PC.

Int J Mass Spectrom. 2015 Feb 1;377:719-717.

25.

Deep down on a Caribbean reef: lower mesophotic depths harbor a specialized coral-endosymbiont community.

Bongaerts P, Frade PR, Hay KB, Englebert N, Latijnhouwers KR, Bak RP, Vermeij MJ, Hoegh-Guldberg O.

Sci Rep. 2015 Jan 7;5:7652. doi: 10.1038/srep07652.

26.

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition.

Lim YW, Cuevas DA, Silva GG, Aguinaldo K, Dinsdale EA, Haas AF, Hatay M, Sanchez SE, Wegley-Kelly L, Dutilh BE, Harkins TT, Lee CC, Tom W, Sandin SA, Smith JE, Zgliczynski B, Vermeij MJ, Rohwer F, Edwards RA.

PeerJ. 2014 Aug 19;2:e520. doi: 10.7717/peerj.520. eCollection 2014.

27.

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.

Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin SA, Smith JE, Vermeij MJ, Youle M, Rohwer F.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10227-32. doi: 10.1073/pnas.1403319111. Epub 2014 Jun 30.

28.

Natural diet of coral-excavating sponges consists mainly of dissolved organic carbon (DOC).

Mueller B, de Goeij JM, Vermeij MJ, Mulders Y, van der Ent E, Ribes M, van Duyl FC.

PLoS One. 2014 Feb 25;9(2):e90152. doi: 10.1371/journal.pone.0090152. eCollection 2014.

29.

Large birth size does not reduce negative latent effects of harsh environments across life stages in two coral species.

Hartmann AC, Marhaver KL, Chamberland VF, Sandin SA, Vermeij MJ.

Ecology. 2013 Sep;94(9):1966-76.

PMID:
24279268
30.

Surviving in a marine desert: the sponge loop retains resources within coral reefs.

de Goeij JM, van Oevelen D, Vermeij MJ, Osinga R, Middelburg JJ, de Goeij AF, Admiraal W.

Science. 2013 Oct 4;342(6154):108-10. doi: 10.1126/science.1241981.

31.

Sharing the slope: depth partitioning of agariciid corals and associated Symbiodinium across shallow and mesophotic habitats (2-60 m) on a Caribbean reef.

Bongaerts P, Frade PR, Ogier JJ, Hay KB, van Bleijswijk J, Englebert N, Vermeij MJ, Bak RP, Visser PM, Hoegh-Guldberg O.

BMC Evol Biol. 2013 Sep 23;13:205. doi: 10.1186/1471-2148-13-205.

32.

Comparison between colony morphology and molecular phylogeny in the Caribbean scleractinian coral genus Madracis.

Filatov MV, Frade PR, Bak RP, Vermeij MJ, Kaandorp JA.

PLoS One. 2013 Aug 14;8(8):e71287. doi: 10.1371/journal.pone.0071287. eCollection 2013.

33.

Fast detection of nutrient limitation in macroalgae and seagrass with nutrient-induced fluorescence.

den Haan J, Huisman J, Dekker F, ten Brinke JL, Ford AK, van Ooijen J, van Duyl FC, Vermeij MJ, Visser PM.

PLoS One. 2013 Jul 5;8(7):e68834. doi: 10.1371/journal.pone.0068834. Print 2013.

34.

Janzen-Connell effects in a broadcast-spawning Caribbean coral: distance-dependent survival of larvae and settlers.

Marhaver KL, Vermeij MJ, Rohwer F, Sandin SA.

Ecology. 2013 Jan;94(1):146-60.

PMID:
23600249
35.

Hurricane-driven patterns of clonality in an ecosystem engineer: the Caribbean coral Montastraea annularis.

Foster NL, Baums IB, Sanchez JA, Paris CB, Chollett I, Agudelo CL, Vermeij MJ, Mumby PJ.

PLoS One. 2013;8(1):e53283. doi: 10.1371/journal.pone.0053283. Epub 2013 Jan 7.

36.

Survival and dispersal of turf algae and macroalgae consumed by herbivorous coral reef fishes.

Vermeij MJ, van der Heijden RA, Olthuis JG, Marhaver KL, Smith JE, Visser PM.

Oecologia. 2013 Feb;171(2):417-25. doi: 10.1007/s00442-012-2436-3. Epub 2012 Sep 4.

PMID:
22945506
37.

Evolutionary diversification of banded tube-dwelling anemones (Cnidaria; Ceriantharia; Isarachnanthus) in the Atlantic Ocean.

Stampar SN, Maronna MM, Vermeij MJ, Silveira FL, Morandini AC.

PLoS One. 2012;7(7):e41091. doi: 10.1371/journal.pone.0041091. Epub 2012 Jul 16. Erratum in: PLoS One. 2014;9(9):e109481.

38.

Connectivity of Caribbean coral populations: complementary insights from empirical and modelled gene flow.

Foster NL, Paris CB, Kool JT, Baums IB, Stevens JR, Sanchez JA, Bastidas C, Agudelo C, Bush P, Day O, Ferrari R, Gonzalez P, Gore S, Guppy R, McCartney MA, McCoy C, Mendes J, Srinivasan A, Steiner S, Vermeij MJ, Weil E, Mumby PJ.

Mol Ecol. 2012 Mar;21(5):1143-57. doi: 10.1111/j.1365-294X.2012.05455.x. Epub 2012 Jan 25.

PMID:
22276913
39.

Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae.

Barott KL, Rodriguez-Mueller B, Youle M, Marhaver KL, Vermeij MJ, Smith JE, Rohwer FL.

Proc Biol Sci. 2012 Apr 22;279(1733):1655-64. doi: 10.1098/rspb.2011.2155. Epub 2011 Nov 16.

40.

Black reefs: iron-induced phase shifts on coral reefs.

Kelly LW, Barott KL, Dinsdale E, Friedlander AM, Nosrat B, Obura D, Sala E, Sandin SA, Smith JE, Vermeij MJ, Williams GJ, Willner D, Rohwer F.

ISME J. 2012 Mar;6(3):638-49. doi: 10.1038/ismej.2011.114. Epub 2011 Sep 1. Erratum in: ISME J. 2012 Mar;6(3):708.

41.

The effects of nutrient enrichment and herbivore abundance on the ability of turf algae to overgrow coral in the Caribbean.

Vermeij MJ, van Moorselaar I, Engelhard S, Hörnlein C, Vonk SM, Visser PM.

PLoS One. 2010 Dec 13;5(12):e14312. doi: 10.1371/journal.pone.0014312.

42.

A comparison between coral colonies of the genus Madracis and simulated forms.

Filatov MV, Kaandorp JA, Postma M, van Liere R, Kruszyński KJ, Vermeij MJ, Streekstra GJ, Bak RP.

Proc Biol Sci. 2010 Dec 7;277(1700):3555-61. doi: 10.1098/rspb.2010.0957. Epub 2010 Jun 23.

43.

Reef fishes of Saba Bank, Netherlands Antilles: assemblage structure across a gradient of habitat types.

Toller W, Debrot AO, Vermeij MJ, Hoetjes PC.

PLoS One. 2010 May 21;5(5):e9207. doi: 10.1371/journal.pone.0009207.

44.

Coral larvae move toward reef sounds.

Vermeij MJ, Marhaver KL, Huijbers CM, Nagelkerken I, Simpson SD.

PLoS One. 2010 May 14;5(5):e10660. doi: 10.1371/journal.pone.0010660.

45.

Survival and settlement success of coral planulae: independent and synergistic effects of macroalgae and microbes.

Vermeij MJ, Smith JE, Smith CM, Vega Thurber R, Sandin SA.

Oecologia. 2009 Mar;159(2):325-36. doi: 10.1007/s00442-008-1223-7. Epub 2008 Dec 3.

PMID:
19050932
46.
47.

Morphogenesis of the branching reef coral Madracis mirabilis.

Kaandorp JA, Sloot PM, Merks RM, Bak RP, Vermeij MJ, Maier C.

Proc Biol Sci. 2005 Jan 22;272(1559):127-33.

48.

Simulation and analysis of flow patterns around the scleractinian coral Madracis mirabilis (Duchassaing and Michelotti).

Kaandorp JA, Koopman EA, Sloot PM, Bak RP, Vermeij MJ, Lampmann LE.

Philos Trans R Soc Lond B Biol Sci. 2003 Sep 29;358(1437):1551-7.

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