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Items: 1 to 50 of 89

1.

Light-regulated collective contractility in a multicellular choanoflagellate.

Brunet T, Larson BT, Linden TA, Vermeij MJA, McDonald K, King N.

Science. 2019 Oct 18;366(6463):326-334. doi: 10.1126/science.aay2346.

PMID:
31624206
2.

Validation of a universal set of primers to study animal-associated microeukaryotic communities.

Del Campo J, Pons MJ, Herranz M, Wakeman KC, Del Valle J, Vermeij MJA, Leander BS, Keeling PJ.

Environ Microbiol. 2019 Oct;21(10):3855-3861. doi: 10.1111/1462-2920.14733. Epub 2019 Jul 25.

PMID:
31278828
3.

Historical changes (1905-present) in catch size and composition reflect altering fisheries practices on a small Caribbean island.

Vermeij MJA, Latijnhouwers KRW, Dilrosun F, Chamberland VF, Dubé CE, Van Buurt G, Debrot AO.

PLoS One. 2019 Jun 13;14(6):e0217589. doi: 10.1371/journal.pone.0217589. eCollection 2019.

4.

Diel population and functional synchrony of microbial communities on coral reefs.

Kelly LW, Nelson CE, Haas AF, Naliboff DS, Calhoun S, Carlson CA, Edwards RA, Fox MD, Hatay M, Johnson MD, Kelly ELA, Lim YW, Macherla S, Quinlan ZA, Silva GGZ, Vermeij MJA, Zgliczynski B, Sandin SA, Smith JE, Rohwer F.

Nat Commun. 2019 Apr 12;10(1):1691. doi: 10.1038/s41467-019-09419-z.

5.

A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes.

Kwong WK, Del Campo J, Mathur V, Vermeij MJA, Keeling PJ.

Nature. 2019 Apr;568(7750):103-107. doi: 10.1038/s41586-019-1072-z. Epub 2019 Apr 3.

PMID:
30944491
6.

Acquisition of obligate mutualist symbionts during the larval stage is not beneficial for a coral host.

Hartmann AC, Marhaver KL, Klueter A, Lovci MT, Closek CJ, Diaz E, Chamberland VF, Archer FI, Deheyn DD, Vermeij MJA, Medina M.

Mol Ecol. 2019 Jan;28(1):141-155. doi: 10.1111/mec.14967.

PMID:
30506836
7.

High Prevalence and Endemism of Trypanosomatids on a Small Caribbean Island.

Votýpka J, Kment P, Kriegová E, Vermeij MJA, Keeling PJ, Yurchenko V, Lukeš J.

J Eukaryot Microbiol. 2019 Jul;66(4):600-607. doi: 10.1111/jeu.12704. Epub 2018 Dec 18.

PMID:
30480347
8.

Decreased mitochondrial respiration in aneurysmal aortas of Fibulin-4 mutant mice is linked to PGC1A regulation.

van der Pluijm I, Burger J, van Heijningen PM, IJpma A, van Vliet N, Milanese C, Schoonderwoerd K, Sluiter W, Ringuette LJ, Dekkers DHW, Que I, Kaijzel EL, Te Riet L, MacFarlane EG, Das D, van der Linden R, Vermeij M, Demmers JA, Mastroberardino PG, Davis EC, Yanagisawa H, Dietz HC, Kanaar R, Essers J.

Cardiovasc Res. 2018 Nov 1;114(13):1776-1793. doi: 10.1093/cvr/cvy150.

9.

Ecological assessment of the marine ecosystems of Barbuda, West Indies: Using rapid scientific assessment to inform ocean zoning and fisheries management.

Ruttenberg B, Caselle JE, Estep AJ, Johnson AE, Marhaver KL, Richter LJ, Sandin SA, Vermeij MJA, Smith JE, Grenda D, Cannon A.

PLoS One. 2018 Jan 8;13(1):e0189355. doi: 10.1371/journal.pone.0189355. eCollection 2018.

10.

New Seeding Approach Reduces Costs and Time to Outplant Sexually Propagated Corals for Reef Restoration.

Chamberland VF, Petersen D, Guest JR, Petersen U, Brittsan M, Vermeij MJA.

Sci Rep. 2017 Dec 22;7(1):18076. doi: 10.1038/s41598-017-17555-z.

11.

Meta-mass shift chemical profiling of metabolomes from coral reefs.

Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11685-11690. doi: 10.1073/pnas.1710248114. Epub 2017 Oct 12.

12.

Costs and benefits of maternally inherited algal symbionts in coral larvae.

Chamberland VF, Latijnhouwers KRW, Huisman J, Hartmann AC, Vermeij MJA.

Proc Biol Sci. 2017 Jun 28;284(1857). pii: 20170852. doi: 10.1098/rspb.2017.0852.

13.

Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia.

Dubé CE, Mercière A, Vermeij MJ, Planes S.

PLoS One. 2017 Mar 8;12(3):e0173513. doi: 10.1371/journal.pone.0173513. eCollection 2017.

14.

Corrigendum: Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Nov 3;539(7627):123. doi: 10.1038/nature19335. Epub 2016 Aug 24. No abstract available.

PMID:
27556939
15.

Defective Connective Tissue Remodeling in Smad3 Mice Leads to Accelerated Aneurysmal Growth Through Disturbed Downstream TGF-β Signaling.

van der Pluijm I, van Vliet N, von der Thusen JH, Robertus JL, Ridwan Y, van Heijningen PM, van Thiel BS, Vermeij M, Hoeks SE, Buijs-Offerman RMGB, Verhagen HJM, Kanaar R, Bertoli-Avella AM, Essers J.

EBioMedicine. 2016 Oct;12:280-294. doi: 10.1016/j.ebiom.2016.09.006. Epub 2016 Sep 10.

16.

Correction to 'Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence'.

Quinn RA, Vermeij MJ, Hartmann AC, d'Auriac IG, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F.

Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161485. doi: 10.1098/rspb.2016.1485. No abstract available.

17.

Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse.

den Haan J, Huisman J, Brocke HJ, Goehlich H, Latijnhouwers KR, van Heeringen S, Honcoop SA, Bleyenberg TE, Schouten S, Cerli C, Hoitinga L, Vermeij MJ, Visser PM.

Sci Rep. 2016 Jun 29;6:28821. doi: 10.1038/srep28821.

18.

Competitive interactions between corals and turf algae depend on coral colony form.

Swierts T, Vermeij MJ.

PeerJ. 2016 May 10;4:e1984. doi: 10.7717/peerj.1984. eCollection 2016.

19.

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence.

Quinn RA, Vermeij MJ, Hartmann AC, Galtier d'Auriac I, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F.

Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160469. doi: 10.1098/rspb.2016.0469. Erratum in: Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161485. doi: 10.1098/rspb.2016.1485.

20.

Human Microtumors Generated in 3D: Novel Tools for Integrated In Situ Studies of Cancer Immunotherapies.

Hambach L, Buser A, Vermeij M, Pouw N, van der Kwast T, Goulmy E.

Methods Mol Biol. 2016;1393:147-61. doi: 10.1007/978-1-4939-3338-9_15.

PMID:
27033225
21.

Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae.

Mueller B, den Haan J, Visser PM, Vermeij MJ, van Duyl FC.

Sci Rep. 2016 Mar 22;6:23248. doi: 10.1038/srep23248.

22.

Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16. Erratum in: Nature. 2016 Nov 3;539(7627):123.

PMID:
26982729
23.

Decadal comparison of a diminishing coral community: a study using demographics to advance inferences of community status.

Miller M, Williams DE, Huntington BE, Piniak GA, Vermeij MJ.

PeerJ. 2016 Jan 28;4:e1643. doi: 10.7717/peerj.1643. eCollection 2016.

24.

AT1-receptor blockade, but not renin inhibition, reduces aneurysm growth and cardiac failure in fibulin-4 mice.

Te Riet L, van Deel ED, van Thiel BS, Moltzer E, van Vliet N, Ridwan Y, van Veghel R, van Heijningen PM, Robertus JL, Garrelds IM, Vermeij M, van der Pluijm I, Danser AH, Essers J.

J Hypertens. 2016 Apr;34(4):654-65. doi: 10.1097/HJH.0000000000000845.

PMID:
26828783
25.

Biofouling of inlet pipes affects water quality in running seawater aquaria and compromises sponge cell proliferation.

Alexander BE, Mueller B, Vermeij MJA, van der Geest HHG, de Goeij JM.

PeerJ. 2015 Dec 7;3:e1430. doi: 10.7717/peerj.1430. eCollection 2015.

26.

Fibulin-4 deficiency increases TGF-β signalling in aortic smooth muscle cells due to elevated TGF-β2 levels.

Ramnath NW, Hawinkels LJ, van Heijningen PM, te Riet L, Paauwe M, Vermeij M, Danser AH, Kanaar R, ten Dijke P, Essers J.

Sci Rep. 2015 Nov 26;5:16872. doi: 10.1038/srep16872.

27.

Can we measure beauty? Computational evaluation of coral reef aesthetics.

Haas AF, Guibert M, Foerschner A, Co T, Calhoun S, George E, Hatay M, Dinsdale E, Sandin SA, Smith JE, Vermeij MJ, Felts B, Dustan P, Salamon P, Rohwer F.

PeerJ. 2015 Nov 10;3:e1390. doi: 10.7717/peerj.1390. eCollection 2015.

28.

Stable and sporadic symbiotic communities of coral and algal holobionts.

Hester ER, Barott KL, Nulton J, Vermeij MJ, Rohwer FL.

ISME J. 2016 May;10(5):1157-69. doi: 10.1038/ismej.2015.190. Epub 2015 Nov 10.

29.

Reproductive natural history and successful juvenile propagation of the threatened Caribbean pillar coral Dendrogyra cylindrus.

Marhaver KL, Vermeij MJ, Medina MM.

BMC Ecol. 2015 Mar 16;15:9. doi: 10.1186/s12898-015-0039-7.

30.

Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures.

Garg N, Kapono C, Lim YW, Koyama N, Vermeij MJ, Conrad D, Rohwer F, Dorrestein PC.

Int J Mass Spectrom. 2015 Feb 1;377:719-717.

31.

Deep down on a Caribbean reef: lower mesophotic depths harbor a specialized coral-endosymbiont community.

Bongaerts P, Frade PR, Hay KB, Englebert N, Latijnhouwers KR, Bak RP, Vermeij MJ, Hoegh-Guldberg O.

Sci Rep. 2015 Jan 7;5:7652. doi: 10.1038/srep07652.

32.

Stratification based on methylation of TBX2 and TBX3 into three molecular grades predicts progression in patients with pTa-bladder cancer.

Beukers W, Kandimalla R, Masius RG, Vermeij M, Kranse R, van Leenders GJ, Zwarthoff EC.

Mod Pathol. 2015 Apr;28(4):515-22. doi: 10.1038/modpathol.2014.145. Epub 2014 Nov 14.

33.

Extracellular matrix defects in aneurysmal Fibulin-4 mice predispose to lung emphysema.

Ramnath NW, van de Luijtgaarden KM, van der Pluijm I, van Nimwegen M, van Heijningen PM, Swagemakers SM, van Thiel BS, Ridwan RY, van Vliet N, Vermeij M, Hawinkels LJ, de Munck A, Dzyubachyk O, Meijering E, van der Spek P, Rottier R, Yanagisawa H, Hendriks RW, Kanaar R, Rouwet EV, Kleinjan A, Essers J.

PLoS One. 2014 Sep 25;9(9):e106054. doi: 10.1371/journal.pone.0106054. eCollection 2014.

34.

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition.

Lim YW, Cuevas DA, Silva GG, Aguinaldo K, Dinsdale EA, Haas AF, Hatay M, Sanchez SE, Wegley-Kelly L, Dutilh BE, Harkins TT, Lee CC, Tom W, Sandin SA, Smith JE, Zgliczynski B, Vermeij MJ, Rohwer F, Edwards RA.

PeerJ. 2014 Aug 19;2:e520. doi: 10.7717/peerj.520. eCollection 2014.

35.

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.

Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin SA, Smith JE, Vermeij MJ, Youle M, Rohwer F.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10227-32. doi: 10.1073/pnas.1403319111. Epub 2014 Jun 30.

36.

Natural diet of coral-excavating sponges consists mainly of dissolved organic carbon (DOC).

Mueller B, de Goeij JM, Vermeij MJ, Mulders Y, van der Ent E, Ribes M, van Duyl FC.

PLoS One. 2014 Feb 25;9(2):e90152. doi: 10.1371/journal.pone.0090152. eCollection 2014.

37.

Large birth size does not reduce negative latent effects of harsh environments across life stages in two coral species.

Hartmann AC, Marhaver KL, Chamberland VF, Sandin SA, Vermeij MJ.

Ecology. 2013 Sep;94(9):1966-76.

PMID:
24279268
38.

Surviving in a marine desert: the sponge loop retains resources within coral reefs.

de Goeij JM, van Oevelen D, Vermeij MJ, Osinga R, Middelburg JJ, de Goeij AF, Admiraal W.

Science. 2013 Oct 4;342(6154):108-10. doi: 10.1126/science.1241981.

39.

Sharing the slope: depth partitioning of agariciid corals and associated Symbiodinium across shallow and mesophotic habitats (2-60 m) on a Caribbean reef.

Bongaerts P, Frade PR, Ogier JJ, Hay KB, van Bleijswijk J, Englebert N, Vermeij MJ, Bak RP, Visser PM, Hoegh-Guldberg O.

BMC Evol Biol. 2013 Sep 23;13:205. doi: 10.1186/1471-2148-13-205.

40.

SOCS2 mediates the cross talk between androgen and growth hormone signaling in prostate cancer.

Iglesias-Gato D, Chuan YC, Wikström P, Augsten S, Jiang N, Niu Y, Seipel A, Danneman D, Vermeij M, Fernandez-Perez L, Jenster G, Egevad L, Norstedt G, Flores-Morales A.

Carcinogenesis. 2014 Jan;35(1):24-33. doi: 10.1093/carcin/bgt304. Epub 2013 Sep 12.

PMID:
24031028
41.

Telomerase reverse transcriptase promoter mutations in bladder cancer: high frequency across stages, detection in urine, and lack of association with outcome.

Allory Y, Beukers W, Sagrera A, Flández M, Marqués M, Márquez M, van der Keur KA, Dyrskjot L, Lurkin I, Vermeij M, Carrato A, Lloreta J, Lorente JA, Carrillo-de Santa Pau E, Masius RG, Kogevinas M, Steyerberg EW, van Tilborg AA, Abas C, Orntoft TF, Zuiverloon TC, Malats N, Zwarthoff EC, Real FX.

Eur Urol. 2014 Feb;65(2):360-6. doi: 10.1016/j.eururo.2013.08.052. Epub 2013 Sep 7.

PMID:
24018021
42.

Comparison between colony morphology and molecular phylogeny in the Caribbean scleractinian coral genus Madracis.

Filatov MV, Frade PR, Bak RP, Vermeij MJ, Kaandorp JA.

PLoS One. 2013 Aug 14;8(8):e71287. doi: 10.1371/journal.pone.0071287. eCollection 2013.

43.

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates.

Gregg A, Hatay M, Haas A, Robinett N, Barott K, Vermeij M, Marhaver K, Meirelles P, Thompson F, Rohwer F.

PeerJ. 2013 Jul 16;1:e107. doi: 10.7717/peerj.107. Print 2013.

44.

Fast detection of nutrient limitation in macroalgae and seagrass with nutrient-induced fluorescence.

den Haan J, Huisman J, Dekker F, ten Brinke JL, Ford AK, van Ooijen J, van Duyl FC, Vermeij MJ, Visser PM.

PLoS One. 2013 Jul 5;8(7):e68834. doi: 10.1371/journal.pone.0068834. Print 2013.

45.

Disruption of TTDA results in complete nucleotide excision repair deficiency and embryonic lethality.

Theil AF, Nonnekens J, Steurer B, Mari PO, de Wit J, Lemaitre C, Marteijn JA, Raams A, Maas A, Vermeij M, Essers J, Hoeijmakers JH, Giglia-Mari G, Vermeulen W.

PLoS Genet. 2013 Apr;9(4):e1003431. doi: 10.1371/journal.pgen.1003431. Epub 2013 Apr 18.

46.

Janzen-Connell effects in a broadcast-spawning Caribbean coral: distance-dependent survival of larvae and settlers.

Marhaver KL, Vermeij MJ, Rohwer F, Sandin SA.

Ecology. 2013 Jan;94(1):146-60.

PMID:
23600249
47.

Hypermethylation of the polycomb group target gene PCDH7 in bladder tumors from patients of all ages.

Beukers W, Hercegovac A, Vermeij M, Kandimalla R, Blok AC, van der Aa MM, Zwarthoff EC, Zuiverloon TC.

J Urol. 2013 Jul;190(1):311-6. doi: 10.1016/j.juro.2013.01.078. Epub 2013 Jan 28.

PMID:
23369722
48.

Hurricane-driven patterns of clonality in an ecosystem engineer: the Caribbean coral Montastraea annularis.

Foster NL, Baums IB, Sanchez JA, Paris CB, Chollett I, Agudelo CL, Vermeij MJ, Mumby PJ.

PLoS One. 2013;8(1):e53283. doi: 10.1371/journal.pone.0053283. Epub 2013 Jan 7.

49.

The microtubule plus-end tracking protein CLASP2 is required for hematopoiesis and hematopoietic stem cell maintenance.

Drabek K, Gutiérrez L, Vermeij M, Clapes T, Patel SR, Boisset JC, van Haren J, Pereira AL, Liu Z, Akinci U, Nikolic T, van Ijcken W, van den Hout M, Meinders M, Melo C, Sambade C, Drabek D, Hendriks RW, Philipsen S, Mommaas M, Grosveld F, Maiato H, Italiano JE Jr, Robin C, Galjart N.

Cell Rep. 2012 Oct 25;2(4):781-8. doi: 10.1016/j.celrep.2012.08.040. Epub 2012 Oct 19.

50.

Survival and dispersal of turf algae and macroalgae consumed by herbivorous coral reef fishes.

Vermeij MJ, van der Heijden RA, Olthuis JG, Marhaver KL, Smith JE, Visser PM.

Oecologia. 2013 Feb;171(2):417-25. doi: 10.1007/s00442-012-2436-3. Epub 2012 Sep 4.

PMID:
22945506

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