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Items: 1 to 50 of 70

1.

Temporal Bacterial Surveillance of Salmon Aquaculture Sites Indicates a Long Lasting Benthic Impact With Minimal Recovery.

Verhoeven JTP, Salvo F, Knight R, Hamoutene D, Dufour SC.

Front Microbiol. 2018 Dec 12;9:3054. doi: 10.3389/fmicb.2018.03054. eCollection 2018.

2.

Virus discovery reveals frequent infection by diverse novel members of the Flaviviridae in wild lemurs.

Canuti M, Williams CV, Sagan SM, Oude Munnink BB, Gadi S, Verhoeven JTP, Kellam P, Cotten M, Lang AS, Junge RE, Cullen JM, van der Hoek L.

Arch Virol. 2019 Feb;164(2):509-522. doi: 10.1007/s00705-018-4099-9. Epub 2018 Nov 20.

PMID:
30460488
3.

Alstroemeria yellow spot virus (AYSV): a new orthotospovirus species within a growing Eurasian clade.

Hassani-Mehraban A, Dullemans AM, Verhoeven JTJ, Roenhorst JW, Peters D, van der Vlugt RAA, Kormelink R.

Arch Virol. 2019 Jan;164(1):117-126. doi: 10.1007/s00705-018-4027-z. Epub 2018 Oct 4.

4.

Author Correction: Nitrogen-rich organic soils under warm well-drained conditions are global nitrous oxide emission hotspots.

Pärn J, Verhoeven JTA, Butterbach-Bahl K, Dise NB, Ullah S, Aasa A, Egorov S, Espenberg M, Järveoja J, Jauhiainen J, Kasak K, Klemedtsson L, Kull A, Laggoun-Défarge F, Lapshina ED, Lohila A, Lõhmus K, Maddison M, Mitsch WJ, Müller C, Niinemets Ü, Osborne B, Pae T, Salm JO, Sgouridis F, Sohar K, Soosaar K, Storey K, Teemusk A, Tenywa MM, Tournebize J, Truu J, Veber G, Villa JA, Zaw SS, Mander Ü.

Nat Commun. 2018 Apr 26;9(1):1748. doi: 10.1038/s41467-018-04197-6.

5.

ViDiT-CACTUS: an inexpensive and versatile library preparation and sequence analysis method for virus discovery and other microbiology applications.

Verhoeven JTP, Canuti M, Munro HJ, Dufour SC, Lang AS.

Can J Microbiol. 2018 Oct;64(10):761-773. doi: 10.1139/cjm-2018-0097. Epub 2018 Apr 19.

PMID:
29671336
6.

ICTV Virus Taxonomy Profile: Avsunviroidae.

Di Serio F, Li SF, Matoušek J, Owens RA, Pallás V, Randles JW, Sano T, Verhoeven JTJ, Vidalakis G, Flores R, Ictv Report Consortium.

J Gen Virol. 2018 May;99(5):611-612. doi: 10.1099/jgv.0.001045. Epub 2018 Mar 26.

PMID:
29580320
7.

Nitrogen-rich organic soils under warm well-drained conditions are global nitrous oxide emission hotspots.

Pärn J, Verhoeven JTA, Butterbach-Bahl K, Dise NB, Ullah S, Aasa A, Egorov S, Espenberg M, Järveoja J, Jauhiainen J, Kasak K, Klemedtsson L, Kull A, Laggoun-Défarge F, Lapshina ED, Lohila A, Lõhmus K, Maddison M, Mitsch WJ, Müller C, Niinemets Ü, Osborne B, Pae T, Salm JO, Sgouridis F, Sohar K, Soosaar K, Storey K, Teemusk A, Tenywa MM, Tournebize J, Truu J, Veber G, Villa JA, Zaw SS, Mander Ü.

Nat Commun. 2018 Mar 19;9(1):1135. doi: 10.1038/s41467-018-03540-1. Erratum in: Nat Commun. 2018 Apr 26;9(1):1748.

8.

Taxonomic and functional turnover are decoupled in European peat bogs.

Robroek BJM, Jassey VEJ, Payne RJ, Martí M, Bragazza L, Bleeker A, Buttler A, Caporn SJM, Dise NB, Kattge J, Zając K, Svensson BH, van Ruijven J, Verhoeven JTA.

Nat Commun. 2017 Oct 27;8(1):1161. doi: 10.1038/s41467-017-01350-5.

9.

Spatial patterns of water-dispersed seed deposition along stream riparian gradients.

Fraaije RGA, Moinier S, van Gogh I, Timmers R, van Deelen JJ, Verhoeven JTA, Soons MB.

PLoS One. 2017 Sep 28;12(9):e0185247. doi: 10.1371/journal.pone.0185247. eCollection 2017.

10.

Coronafacoyl Phytotoxin Biosynthesis and Evolution in the Common Scab Pathogen Streptomyces scabiei.

Bown L, Li Y, Berrué F, Verhoeven JTP, Dufour SC, Bignell DRD.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01169-17. doi: 10.1128/AEM.01169-17. Print 2017 Oct 1.

11.

Effects of increased flooding on riparian vegetation: Field experiments simulating climate change along five European lowland streams.

Garssen AG, Baattrup-Pedersen A, Riis T, Raven BM, Hoffman CC, Verhoeven JTA, Soons MB.

Glob Chang Biol. 2017 Aug;23(8):3052-3063. doi: 10.1111/gcb.13687. Epub 2017 Apr 17.

PMID:
28295947
12.

Characterization of tomato apical stunt viroid isolated from a 24-year old seed lot of Capsicum annuum.

Verhoeven JTJ, Koenraadt HMS, Westenberg M, Roenhorst JW.

Arch Virol. 2017 Jun;162(6):1741-1744. doi: 10.1007/s00705-017-3277-5. Epub 2017 Feb 15.

PMID:
28204897
13.

Microbiome analysis shows enrichment for specific bacteria in separate anatomical regions of the deep-sea carnivorous sponge Chondrocladia grandis.

Verhoeven JT, Kavanagh AN, Dufour SC.

FEMS Microbiol Ecol. 2017 Jan;93(1). pii: fiw214. Epub 2016 Oct 17.

PMID:
27756769
14.

Generic RT-PCR tests for detection and identification of tospoviruses.

Hassani-Mehraban A, Westenberg M, Verhoeven JT, van de Vossenberg BT, Kormelink R, Roenhorst JW.

J Virol Methods. 2016 Jul;233:89-96. doi: 10.1016/j.jviromet.2016.03.015. Epub 2016 Mar 29.

PMID:
27036502
15.

Poor methodological detail precludes experimental repeatability and hampers synthesis in ecology.

Haddaway NR, Verhoeven JT.

Ecol Evol. 2015 Sep 23;5(19):4451-4. doi: 10.1002/ece3.1722. eCollection 2015 Oct.

16.

A pospiviroid from symptomless portulaca plants closely related to iresine viroid 1.

Verhoeven JT, Roenhorst JW, Hooftman M, Meekes ET, Flores R, Serra P.

Virus Res. 2015 Jul 2;205:22-6. doi: 10.1016/j.virusres.2015.05.005. Epub 2015 May 16.

PMID:
25987478
17.

Riparian plant community responses to increased flooding: a meta-analysis.

Garssen AG, Baattrup-Pedersen A, Voesenek LA, Verhoeven JT, Soons MB.

Glob Chang Biol. 2015 Aug;21(8):2881-90. doi: 10.1111/gcb.12921. Epub 2015 Jun 8. Review.

PMID:
25752818
18.

Effects of nutrient enrichment on mangrove leaf litter decomposition.

Keuskamp JA, Hefting MM, Dingemans BJ, Verhoeven JT, Feller IC.

Sci Total Environ. 2015 Mar 1;508:402-10. doi: 10.1016/j.scitotenv.2014.11.092. Epub 2014 Dec 11.

PMID:
25497680
19.

The complete nucleotide sequence of chrysanthemum stem necrosis virus.

Dullemans AM, Verhoeven JT, Kormelink R, van der Vlugt RA.

Arch Virol. 2015 Feb;160(2):605-8. doi: 10.1007/s00705-014-2282-1. Epub 2014 Nov 15.

PMID:
25398595
20.

Spatial analysis of soil subsidence in peat meadow areas in Friesland in relation to land and water management, climate change, and adaptation.

Brouns K, Eikelboom T, Jansen PC, Janssen R, Kwakernaak C, van den Akker JJ, Verhoeven JT.

Environ Manage. 2015 Feb;55(2):360-72. doi: 10.1007/s00267-014-0392-x. Epub 2014 Oct 29.

PMID:
25351830
21.

Current status of viroid taxonomy.

Di Serio F, Flores R, Verhoeven JT, Li SF, Pallás V, Randles JW, Sano T, Vidalakis G, Owens RA.

Arch Virol. 2014 Dec;159(12):3467-78. doi: 10.1007/s00705-014-2200-6. Epub 2014 Sep 13.

PMID:
25216773
22.

The effects of salinization on aerobic and anaerobic decomposition and mineralization in peat meadows: the roles of peat type and land use.

Brouns K, Verhoeven JT, Hefting MM.

J Environ Manage. 2014 Oct 1;143:44-53. doi: 10.1016/j.jenvman.2014.04.009. Epub 2014 May 16.

PMID:
24837279
23.

Effects of climate-induced increases in summer drought on riparian plant species: a meta-analysis.

Garssen AG, Verhoeven JT, Soons MB.

Freshw Biol. 2014 May;59(5):1052-1063. Epub 2014 Feb 16.

24.

Effects of increased summer flooding on nitrogen dynamics in impounded mangroves.

Verhoeven JT, Laanbroek HJ, Rains MC, Whigham DF.

J Environ Manage. 2014 Jun 15;139:217-26. doi: 10.1016/j.jenvman.2014.02.035. Epub 2014 Apr 19.

PMID:
24751377
25.

Short period of oxygenation releases latch on peat decomposition.

Brouns K, Verhoeven JT, Hefting MM.

Sci Total Environ. 2014 May 15;481:61-8. doi: 10.1016/j.scitotenv.2014.02.030. Epub 2014 Feb 28.

PMID:
24583945
26.

Changes in community composition of ammonia-oxidizing betaproteobacteria from stands of Black mangrove (Avicennia germinans) in response to ammonia enrichment and more oxic conditions.

Laanbroek HJ, Keijzer RM, Verhoeven JT, Whigham DF.

Front Microbiol. 2013 Nov 20;4:343. doi: 10.3389/fmicb.2013.00343. eCollection 2013.

27.

Autologous antibody capture to enrich immunogenic viruses for viral discovery.

Oude Munnink BB, Jazaeri Farsani SM, Deijs M, Jonkers J, Verhoeven JT, Ieven M, Goossens H, de Jong MD, Berkhout B, Loens K, Kellam P, Bakker M, Canuti M, Cotten M, van der Hoek L.

PLoS One. 2013 Nov 4;8(11):e78454. doi: 10.1371/journal.pone.0078454. eCollection 2013.

28.

Lettuce necrotic leaf curl virus, a new plant virus infecting lettuce and a proposed member of the genus Torradovirus.

Verbeek M, Dullemans AM, van Raaij HM, Verhoeven JT, van der Vlugt RA.

Arch Virol. 2014 Apr;159(4):801-5. doi: 10.1007/s00705-013-1835-z. Epub 2013 Oct 19.

PMID:
24142269
29.

First Report of a 16SrIX Group ('Candidatus Phytoplasma phoenicium'-Related) Phytoplasma Associated with a Chrysanthemum Disease.

Bayat H, Verhoeven JTJ, Botermans M, Peters D, Hassani-Mehraban A.

Plant Dis. 2013 Aug;97(8):1110. doi: 10.1094/PDIS-01-13-0050-PDN.

PMID:
30722519
30.

Identification of a new cyclovirus in cerebrospinal fluid of patients with acute central nervous system infections.

Tan le V, van Doorn HR, Nghia HD, Chau TT, Tu le TP, de Vries M, Canuti M, Deijs M, Jebbink MF, Baker S, Bryant JE, Tham NT, BKrong NT, Boni MF, Loi TQ, Phuong le T, Verhoeven JT, Crusat M, Jeeninga RE, Schultsz C, Chau NV, Hien TT, van der Hoek L, Farrar J, de Jong MD.

MBio. 2013 Jun 18;4(3):e00231-13. doi: 10.1128/mBio.00231-13.

31.

Dahlia latent viroid: a recombinant new species of the family Pospiviroidae posing intriguing questions about its origin and classification.

Verhoeven JT, Meekes ET, Roenhorst JW, Flores R, Serra P.

J Gen Virol. 2013 Apr;94(Pt 4):711-9. doi: 10.1099/vir.0.048751-0. Epub 2012 Dec 19.

PMID:
23255620
32.

Development and validation of a real-time RT-PCR assay for generic detection of pospiviroids.

Botermans M, van de Vossenberg BT, Verhoeven JT, Roenhorst JW, Hooftman M, Dekter R, Meekes ET.

J Virol Methods. 2013 Jan;187(1):43-50. doi: 10.1016/j.jviromet.2012.09.004. Epub 2012 Sep 12. Erratum in: J Virol Methods. 2013 Apr;189(1):242.

PMID:
22981990
33.

Stable Carbon and Nitrogen Isotopes in a Peat Profile Are Influenced by Early Stage Diagenesis and Changes in Atmospheric CO(2) and N Deposition.

Esmeijer-Liu AJ, Kürschner WM, Lotter AF, Verhoeven JT, Goslar T.

Water Air Soil Pollut. 2012 Jun;223(5):2007-2022. Epub 2012 Jan 25.

34.

The Distribution of Ammonia-Oxidizing Betaproteobacteria in Stands of Black Mangroves (Avicennia germinans).

Laanbroek HJ, Keijzer RM, Verhoeven JT, Whigham DF.

Front Microbiol. 2012 Apr 23;3:153. doi: 10.3389/fmicb.2012.00153. eCollection 2012.

35.

Retention of heavy metals and poly-aromatic hydrocarbons from road water in a constructed wetland and the effect of de-icing.

Tromp K, Lima AT, Barendregt A, Verhoeven JT.

J Hazard Mater. 2012 Feb 15;203-204:290-8. doi: 10.1016/j.jhazmat.2011.12.024. Epub 2011 Dec 17.

PMID:
22226719
36.

Mexican papita viroid and tomato planta macho viroid belong to a single species in the genus Pospiviroid.

Verhoeven JT, Roenhorst JW, Owens RA.

Arch Virol. 2011 Aug;156(8):1433-7. doi: 10.1007/s00705-011-0975-2. Epub 2011 Mar 26.

PMID:
21442229
37.

First Report of Iresine viroid 1 in Celosia plumosa in the Netherlands.

Verhoeven JTJ, Jansen CCC, Botermans M, Roenhorst JW.

Plant Dis. 2010 Jul;94(7):920. doi: 10.1094/PDIS-94-7-0920C.

PMID:
30743585
38.

First Report of Tomato apical stunt viroid in the Symptomless Hosts Lycianthes rantonnetii and Streptosolen jamesonii in the Netherlands.

Verhoeven JTJ, Botermans M, Jansen CCC, Roenhorst JW.

Plant Dis. 2010 Jun;94(6):791. doi: 10.1094/PDIS-94-6-0791A.

PMID:
30754328
39.

A distinct tospovirus causing necrotic streak on Alstroemeria sp. in Colombia.

Hassani-Mehraban A, Botermans M, Verhoeven JT, Meekes E, Saaijer J, Peters D, Goldbach R, Kormelink R.

Arch Virol. 2010 Mar;155(3):423-8. doi: 10.1007/s00705-010-0590-7. Epub 2010 Feb 12.

40.

High stability of original predominant pospiviroid genotypes upon mechanical inoculation from ornamentals to potato and tomato.

Verhoeven JT, Roenhorst JW.

Arch Virol. 2010 Feb;155(2):269-74. doi: 10.1007/s00705-009-0572-9. Epub 2009 Dec 12.

PMID:
20012658
41.

Plant adaptations and microbial processes in wetlands.

Verhoeven JT, Sorrell BK.

Ann Bot. 2010 Jan;105(1):127. doi: 10.1093/aob/mcp266. No abstract available.

42.

First Report of Tomato chlorotic dwarf viroid in Greenhouse Tomatoes in Arizona.

Ling KS, Verhoeven JTJ, Singh RP, Brown JK.

Plant Dis. 2009 Oct;93(10):1075. doi: 10.1094/PDIS-93-10-1075B.

PMID:
30754368
43.

First Report of Tomato yellow leaf curl virus in Tomato in the Netherlands.

Botermans M, Verhoeven JTJ, Jansen CCC, Roenhorst JW, Stijger CCMM, Pham KTK.

Plant Dis. 2009 Oct;93(10):1073. doi: 10.1094/PDIS-93-10-1073C.

PMID:
30754363
44.

Agricultural use of wetlands: opportunities and limitations.

Verhoeven JT, Setter TL.

Ann Bot. 2010 Jan;105(1):155-63. doi: 10.1093/aob/mcp172. Review.

45.

Pepper chat fruit viroid: biological and molecular properties of a proposed new species of the genus Pospiviroid.

Verhoeven JT, Jansen CC, Roenhorst JW, Flores R, de la Peña M.

Virus Res. 2009 Sep;144(1-2):209-14. doi: 10.1016/j.virusres.2009.05.002. Epub 2009 May 13.

PMID:
19442691
46.

Interacting effects of sulphate pollution, sulphide toxicity and eutrophication on vegetation development in fens: a mesocosm experiment.

Geurts JJ, Sarneel JM, Willers BJ, Roelofs JG, Verhoeven JT, Lamers LP.

Environ Pollut. 2009 Jul;157(7):2072-81. doi: 10.1016/j.envpol.2009.02.024. Epub 2009 Mar 12.

PMID:
19285368
47.

First Report of Potato spindle tuber viroid in Cape Gooseberry (Physalis peruviana) from Turkey and Germany.

Verhoeven JTJ, Botermans M, Roenhorst JW, Westerhof J, Meekes ETM.

Plant Dis. 2009 Mar;93(3):316. doi: 10.1094/PDIS-93-3-0316A.

PMID:
30764193
48.

N2O emission hotspots at different spatial scales and governing factors for small scale hotspots.

van den Heuvel RN, Hefting MM, Tan NC, Jetten MS, Verhoeven JT.

Sci Total Environ. 2009 Mar 15;407(7):2325-32. doi: 10.1016/j.scitotenv.2008.11.010. Epub 2008 Dec 13.

PMID:
19070351
49.

Geochemistry and flooding as determining factors of plant species composition in Dutch winter-flooded riverine grasslands.

Beumer V, van Wirdum G, Beltman B, Griffioen J, Grootjans AP, Verhoeven JT.

Sci Total Environ. 2008 Aug 25;402(1):70-81. doi: 10.1016/j.scitotenv.2008.03.044. Epub 2008 Jun 2.

PMID:
18514261
50.

First Report of Solanum jasminoides Infected by Citrus exocortis viroid in Germany and the Netherlands and Tomato apical stunt viroid in Belgium and Germany.

Verhoeven JTJ, Jansen CCC, Roenhorst JW, Steyer S, Schwind N, Wassenegger M.

Plant Dis. 2008 Jun;92(6):973. doi: 10.1094/PDIS-92-6-0973A.

PMID:
30769734

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