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Characterization of sixteen Achromobacter xylosoxidans phages from Abidjan, Côte d'Ivoire, isolated on a single clinical strain.

Essoh C, Vernadet JP, Vergnaud G, Coulibaly A, Kakou-N'Douba A, N'Guetta AS, Ouassa T, Pourcel C.

Arch Virol. 2020 Jan 2. doi: 10.1007/s00705-019-04511-7. [Epub ahead of print]


And Then There Were Three: Discovering the Role of CRISPRs.

Vergnaud G.

CRISPR J. 2019 Dec;2(6):359-361. doi: 10.1089/crispr.2019.29073.gve. No abstract available.


CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers.

Pourcel C, Touchon M, Villeriot N, Vernadet JP, Couvin D, Toffano-Nioche C, Vergnaud G.

Nucleic Acids Res. 2020 Jan 8;48(D1):D535-D544. doi: 10.1093/nar/gkz915.


Genetic Diversity of Brucella melitensis in Kazakhstan in Relation to World-Wide Diversity.

Shevtsova E, Vergnaud G, Shevtsov A, Shustov A, Berdimuratova K, Mukanov K, Syzdykov M, Kuznetsov A, Lukhnova L, Izbanova U, Filipenko M, Ramankulov Y.

Front Microbiol. 2019 Aug 13;10:1897. doi: 10.3389/fmicb.2019.01897. eCollection 2019.


Insights from Bacillus anthracis strains isolated from permafrost in the tundra zone of Russia.

Timofeev V, Bahtejeva I, Mironova R, Titareva G, Lev I, Christiany D, Borzilov A, Bogun A, Vergnaud G.

PLoS One. 2019 May 22;14(5):e0209140. doi: 10.1371/journal.pone.0209140. eCollection 2019.


Molecular characterization of Brucella species from Zimbabwe.

Ledwaba MB, Gomo C, Lekota KE, Le Flèche P, Hassim A, Vergnaud G, van Heerden H.

PLoS Negl Trop Dis. 2019 May 20;13(5):e0007311. doi: 10.1371/journal.pntd.0007311. eCollection 2019 May.


Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption.

Latino L, Midoux C, Vergnaud G, Pourcel C.

PLoS One. 2019 Apr 16;14(4):e0215456. doi: 10.1371/journal.pone.0215456. eCollection 2019.


Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire.

Essoh C, Vernadet JP, Vergnaud G, Coulibaly A, Kakou-N'Douba A, N'Guetta AS, Resch G, Pourcel C.

Microbiol Resour Announc. 2019 Jan 3;8(1). pii: e01358-18. doi: 10.1128/MRA.01358-18. eCollection 2019 Jan.


Genotypic Expansion Within the Population Structure of Classical Brucella Species Revealed by MLVA16 Typing of 1404 Brucella Isolates From Different Animal and Geographic Origins, 1974-2006.

Vergnaud G, Hauck Y, Christiany D, Daoud B, Pourcel C, Jacques I, Cloeckaert A, Zygmunt MS.

Front Microbiol. 2018 Jul 12;9:1545. doi: 10.3389/fmicb.2018.01545. eCollection 2018.


CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Néron B, Rocha EPC, Vergnaud G, Gautheret D, Pourcel C.

Nucleic Acids Res. 2018 Jul 2;46(W1):W246-W251. doi: 10.1093/nar/gky425.


Transposition Behavior Revealed by High-Resolution Description of Pseudomonas Aeruginosa Saltovirus Integration Sites.

Vergnaud G, Midoux C, Blouin Y, Bourkaltseva M, Krylov V, Pourcel C.

Viruses. 2018 May 7;10(5). pii: E245. doi: 10.3390/v10050245.


Associations between Mycobacterium tuberculosis Beijing genotype and drug resistance to four first-line drugs: a survey in China.

Liu H, Zhang Y, Liu Z, Liu J, Hauck Y, Liu J, Dong H, Liu J, Zhao X, Lu B, Jiang Y, Vergnaud G, Pourcel C, Wan K.

Front Med. 2018 Feb;12(1):92-97. doi: 10.1007/s11684-017-0610-z. Epub 2017 Dec 29.


Russian isolates enlarge the known geographic diversity of Francisella tularensis subsp. mediasiatica.

Timofeev V, Bakhteeva I, Titareva G, Kopylov P, Christiany D, Mokrievich A, Dyatlov I, Vergnaud G.

PLoS One. 2017 Sep 5;12(9):e0183714. doi: 10.1371/journal.pone.0183714. eCollection 2017.


A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus.

Pourcel C, Midoux C, Vergnaud G, Latino L.

J Gen Virol. 2017 Aug;98(8):2181-2189. doi: 10.1099/jgv.0.000883. Epub 2017 Aug 4.


Correction: Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade.

Vergnaud G, Girault G, Thierry S, Pourcel C, Madani N, Blouin Y.

PLoS One. 2017 Jun 27;12(6):e0180603. doi: 10.1371/journal.pone.0180603. eCollection 2017.


Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts.

Al Dahouk S, Köhler S, Occhialini A, Jiménez de Bagüés MP, Hammerl JA, Eisenberg T, Vergnaud G, Cloeckaert A, Zygmunt MS, Whatmore AM, Melzer F, Drees KP, Foster JT, Wattam AR, Scholz HC.

Sci Rep. 2017 Mar 16;7:44420. doi: 10.1038/srep44420.


Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage.

Pourcel C, Midoux C, Hauck Y, Vergnaud G, Latino L.

PLoS One. 2017 Jan 6;12(1):e0169684. doi: 10.1371/journal.pone.0169684. eCollection 2017.


Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A.

Pourcel C, Midoux C, Latino L, Petit MA, Vergnaud G.

Genome Announc. 2016 Nov 17;4(6). pii: e00916-16. doi: 10.1128/genomeA.00916-16.


Brucella vulpis sp. nov., isolated from mandibular lymph nodes of red foxes (Vulpes vulpes).

Scholz HC, Revilla-Fernández S, Dahouk SA, Hammerl JA, Zygmunt MS, Cloeckaert A, Koylass M, Whatmore AM, Blom J, Vergnaud G, Witte A, Aistleitner K, Hofer E.

Int J Syst Evol Microbiol. 2016 May;66(5):2090-2098. doi: 10.1099/ijsem.0.000998. Epub 2016 Feb 29.


Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa.

Latino L, Midoux C, Hauck Y, Vergnaud G, Pourcel C.

Microbiology. 2016 May;162(5):748-763. doi: 10.1099/mic.0.000263. Epub 2016 Feb 25.


Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade.

Vergnaud G, Girault G, Thierry S, Pourcel C, Madani N, Blouin Y.

PLoS One. 2016 Feb 22;11(2):e0146216. doi: 10.1371/journal.pone.0146216. eCollection 2016. Erratum in: PLoS One. 2017 Jun 27;12 (6):e0180603.


Development of a Multiple Loci Variable Number of Tandem Repeats Analysis (MLVA) to Unravel the Intra-Pathovar Structure of Pseudomonas syringae pv. actinidiae Populations Worldwide.

Ciarroni S, Gallipoli L, Taratufolo MC, Butler MI, Poulter RT, Pourcel C, Vergnaud G, Balestra GM, Mazzaglia A.

PLoS One. 2015 Aug 11;10(8):e0135310. doi: 10.1371/journal.pone.0135310. eCollection 2015.


Molecular Epidemiology of Mycoplasma pneumoniae: Genotyping Using Single Nucleotide Polymorphisms and SNaPshot Technology.

Touati A, Blouin Y, Sirand-Pugnet P, Renaudin H, Oishi T, Vergnaud G, Bébéar C, Pereyre S.

J Clin Microbiol. 2015 Oct;53(10):3182-94. doi: 10.1128/JCM.01156-15. Epub 2015 Jul 22.


Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire.

Essoh C, Latino L, Midoux C, Blouin Y, Loukou G, Nguetta SP, Lathro S, Cablanmian A, Kouassi AK, Vergnaud G, Pourcel C.

PLoS One. 2015 Jun 26;10(6):e0130548. doi: 10.1371/journal.pone.0130548. eCollection 2015.


A novel multiple locus variable number of tandem repeat (VNTR) analysis (MLVA) method for Propionibacterium acnes.

Hauck Y, Soler C, Gérôme P, Vong R, Macnab C, Appere G, Vergnaud G, Pourcel C.

Infect Genet Evol. 2015 Jul;33:233-41. doi: 10.1016/j.meegid.2015.05.009. Epub 2015 May 9.


Generation of a CRISPR database for Yersinia pseudotuberculosis complex and role of CRISPR-based immunity in conjugation.

Koskela KA, Mattinen L, Kalin-Mänttäri L, Vergnaud G, Gorgé O, Nikkari S, Skurnik M.

Environ Microbiol. 2015 Nov;17(11):4306-21. doi: 10.1111/1462-2920.12816. Epub 2015 Mar 27.


Development of a multiple-locus variable-number tandem-repeat typing scheme for genetic fingerprinting of Burkholderia cenocepacia and application to nationwide epidemiological analysis.

Segonds C, Thouverez M, Barthe A, Bossuet-Greif N, Tisseyre L, Plésiat P, Vergnaud G, Chabanon G, Pourcel C.

J Clin Microbiol. 2015 Feb;53(2):398-409. doi: 10.1128/JCM.02473-14. Epub 2014 Nov 19.


Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA).

Bergonier D, Sobral D, Feßler AT, Jacquet E, Gilbert FB, Schwarz S, Treilles M, Bouloc P, Pourcel C, Vergnaud G.

Vet Res. 2014 Oct 2;45:97. doi: 10.1186/s13567-014-0097-4.


Brucella papionis sp. nov., isolated from baboons (Papio spp.).

Whatmore AM, Davison N, Cloeckaert A, Al Dahouk S, Zygmunt MS, Brew SD, Perrett LL, Koylass MS, Vergnaud G, Quance C, Scholz HC, Dick EJ Jr, Hubbard G, Schlabritz-Loutsevitch NE.

Int J Syst Evol Microbiol. 2014 Dec;64(Pt 12):4120-8. doi: 10.1099/ijs.0.065482-0. Epub 2014 Sep 21.


Yersinia pseudotuberculosis ST42 (O:1) Strain Misidentified as Yersinia pestis by Mass Spectrometry Analysis.

Gérôme P, Le Flèche P, Blouin Y, Scholz HC, Thibault FM, Raynaud F, Vergnaud G, Pourcel C.

Genome Announc. 2014 Jun 12;2(3). pii: e00435-14. doi: 10.1128/genomeA.00435-14.


Genotyping of French Bacillus anthracis strains based on 31-loci multi locus VNTR analysis: epidemiology, marker evaluation, and update of the internet genotype database.

Thierry S, Tourterel C, Le Flèche P, Derzelle S, Dekhil N, Mendy C, Colaneri C, Vergnaud G, Madani N.

PLoS One. 2014 Jun 5;9(6):e95131. doi: 10.1371/journal.pone.0095131. eCollection 2014.


High-throughput sequencing of Bacillus anthracis in France: investigating genome diversity and population structure using whole-genome SNP discovery.

Girault G, Blouin Y, Vergnaud G, Derzelle S.

BMC Genomics. 2014 Apr 16;15:288. doi: 10.1186/1471-2164-15-288.


Progenitor “Mycobacterium canettii” clone responsible for lymph node tuberculosis epidemic, Djibouti.

Blouin Y, Cazajous G, Dehan C, Soler C, Vong R, Hassan MO, Hauck Y, Boulais C, Andriamanantena D, Martinaud C, Martin É, Pourcel C, Vergnaud G.

Emerg Infect Dis. 2014 Jan;20(1):21-8. doi: 10.3201/eid2001.130652.


Draft Genome Sequences of Two Yersinia pseudotuberculosis ST43 (O:1b) Strains, B-7194 and B-7195.

Blouin Y, Platonov ME, Pourcel C, Evseeva VV, Afanas'ev MV, Balakhonov SV, Anisimov AP, Vergnaud G.

Genome Announc. 2013 Jul 18;1(4). pii: e00510-13. doi: 10.1128/genomeA.00510-13.


Molecular characterisation of Brucella species.

Scholz HC, Vergnaud G.

Rev Sci Tech. 2013 Apr;32(1):149-62.


The susceptibility of Pseudomonas aeruginosa strains from cystic fibrosis patients to bacteriophages.

Essoh C, Blouin Y, Loukou G, Cablanmian A, Lathro S, Kutter E, Thien HV, Vergnaud G, Pourcel C.

PLoS One. 2013 Apr 24;8(4):e60575. doi: 10.1371/journal.pone.0060575. Print 2013.


Draft Genome Sequences of Five Yersinia pseudotuberculosis ST19 Isolates and One Isolate Variant.

Platonov ME, Blouin Y, Evseeva VV, Afanas'ev MV, Pourcel C, Balakhonov SV, Vergnaud G, Anisimov AP.

Genome Announc. 2013 Apr 11;1(2):e0012213. doi: 10.1128/genomeA.00122-13.


Use of multilocus variable-number tandem repeat analysis (MLVA) in eight European countries, 2012.

Lindstedt BA, Torpdahl M, Vergnaud G, Le Hello S, Weill FX, Tietze E, Malorny B, Prendergast DM, Ní Ghallchoir E, Lista RF, Schouls LM, Söderlund R, Börjesson S, Åkerström S.

Euro Surveill. 2013 Jan 24;18(4):20385.


Significance of the identification in the Horn of Africa of an exceptionally deep branching Mycobacterium tuberculosis clade.

Blouin Y, Hauck Y, Soler C, Fabre M, Vong R, Dehan C, Cazajous G, Massoure PL, Kraemer P, Jenkins A, Garnotel E, Pourcel C, Vergnaud G.

PLoS One. 2012;7(12):e52841. doi: 10.1371/journal.pone.0052841. Epub 2012 Dec 27.


Rapid identification of international multidrug-resistant Pseudomonas aeruginosa clones by multiple-locus variable number of tandem repeats analysis and investigation of their susceptibility to lytic bacteriophages.

Larché J, Pouillot F, Essoh C, Libisch B, Straut M, Lee JC, Soler C, Lamarca R, Gleize E, Gabard J, Vergnaud G, Pourcel C.

Antimicrob Agents Chemother. 2012 Dec;56(12):6175-80. doi: 10.1128/AAC.01233-12. Epub 2012 Sep 17.


Diversity of Acinetobacter baumannii in four French military hospitals, as assessed by multiple locus variable number of tandem repeats analysis.

Hauck Y, Soler C, Jault P, Mérens A, Gérome P, Nab CM, Trueba F, Bargues L, Thien HV, Vergnaud G, Pourcel C.

PLoS One. 2012;7(9):e44597. doi: 10.1371/journal.pone.0044597. Epub 2012 Sep 12.


MLVA16 typing of Portuguese human and animal Brucella melitensis and Brucella abortus isolates.

Ferreira AC, Chambel L, Tenreiro T, Cardoso R, Flor L, Dias IT, Pacheco T, Garin-Bastuji B, Le Flèche P, Vergnaud G, Tenreiro R, de Sá MI.

PLoS One. 2012;7(8):e42514. doi: 10.1371/journal.pone.0042514. Epub 2012 Aug 14.


High throughput multiple locus variable number of tandem repeat analysis (MLVA) of Staphylococcus aureus from human, animal and food sources.

Sobral D, Schwarz S, Bergonier D, Brisabois A, Feßler AT, Gilbert FB, Kadlec K, Lebeau B, Loisy-Hamon F, Treilles M, Pourcel C, Vergnaud G.

PLoS One. 2012;7(5):e33967. doi: 10.1371/journal.pone.0033967. Epub 2012 May 2.


Yersinia pestis lineages in Mongolia.

Riehm JM, Vergnaud G, Kiefer D, Damdindorj T, Dashdavaa O, Khurelsukh T, Zöller L, Wölfel R, Le Flèche P, Scholz HC.

PLoS One. 2012;7(2):e30624. doi: 10.1371/journal.pone.0030624. Epub 2012 Feb 17.


A new highly discriminatory multiplex capillary-based MLVA assay as a tool for the epidemiological survey of Pseudomonas aeruginosa in cystic fibrosis patients.

Sobral D, Mariani-Kurkdjian P, Bingen E, Vu-Thien H, Hormigos K, Lebeau B, Loisy-Hamon F, Munck A, Vergnaud G, Pourcel C.

Eur J Clin Microbiol Infect Dis. 2012 Sep;31(9):2247-56. doi: 10.1007/s10096-012-1562-5. Epub 2012 Feb 11.


Investigation on Mycobacterium tuberculosis diversity in China and the origin of the Beijing clade.

Wan K, Liu J, Hauck Y, Zhang Y, Liu J, Zhao X, Liu Z, Lu B, Dong H, Jiang Y, Kremer K, Vergnaud G, van Soolingen D, Pourcel C.

PLoS One. 2011;6(12):e29190. doi: 10.1371/journal.pone.0029190. Epub 2011 Dec 29.


Intraspecies biodiversity of the genetically homologous species Brucella microti.

Al Dahouk S, Hofer E, Tomaso H, Vergnaud G, Le Flèche P, Cloeckaert A, Koylass MS, Whatmore AM, Nöckler K, Scholz HC.

Appl Environ Microbiol. 2012 Mar;78(5):1534-43. doi: 10.1128/AEM.06351-11. Epub 2011 Dec 30.


Clostridium botulinum group I strain genotyping by 15-locus multilocus variable-number tandem-repeat analysis.

Fillo S, Giordani F, Anniballi F, Gorgé O, Ramisse V, Vergnaud G, Riehm JM, Scholz HC, Splettstoesser WD, Kieboom J, Olsen JS, Fenicia L, Lista F.

J Clin Microbiol. 2011 Dec;49(12):4252-63. doi: 10.1128/JCM.05396-11. Epub 2011 Oct 19.


Characterization of genetic diversity of Bacillus anthracis in France by using high-resolution melting assays and multilocus variable-number tandem-repeat analysis.

Derzelle S, Laroche S, Le Flèche P, Hauck Y, Thierry S, Vergnaud G, Madani N.

J Clin Microbiol. 2011 Dec;49(12):4286-92. doi: 10.1128/JCM.05439-11. Epub 2011 Oct 12.


High-throughput typing method to identify a non-outbreak-involved Legionella pneumophila strain colonizing the entire water supply system in the town of Rennes, France.

Sobral D, Le Cann P, Gerard A, Jarraud S, Lebeau B, Loisy-Hamon F, Vergnaud G, Pourcel C.

Appl Environ Microbiol. 2011 Oct;77(19):6899-907. doi: 10.1128/AEM.05556-11. Epub 2011 Aug 5.

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