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Items: 36

1.

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones.

Glass JB, Kretz CB, Ganesh S, Ranjan P, Seston SL, Buck KN, Landing WM, Morton PL, Moffett JW, Giovannoni SJ, Vergin KL, Stewart FJ.

Front Microbiol. 2015 Sep 28;6:998. doi: 10.3389/fmicb.2015.00998. eCollection 2015.

2.

Marine bacterioplankton community turnover within seasonally hypoxic waters of a subtropical sound: Devil's Hole, Bermuda.

Parsons RJ, Nelson CE, Carlson CA, Denman CC, Andersson AJ, Kledzik AL, Vergin KL, McNally SP, Treusch AH, Giovannoni SJ.

Environ Microbiol. 2015 Oct;17(10):3481-99. doi: 10.1111/1462-2920.12445. Epub 2014 Apr 18.

PMID:
24589037
3.

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.

Vergin KL, Beszteri B, Monier A, Thrash JC, Temperton B, Treusch AH, Kilpert F, Worden AZ, Giovannoni SJ.

ISME J. 2013 Jul;7(7):1322-32. doi: 10.1038/ismej.2013.32. Epub 2013 Mar 7.

4.

Abundant SAR11 viruses in the ocean.

Zhao Y, Temperton B, Thrash JC, Schwalbach MS, Vergin KL, Landry ZC, Ellisman M, Deerinck T, Sullivan MB, Giovannoni SJ.

Nature. 2013 Feb 21;494(7437):357-60. doi: 10.1038/nature11921. Epub 2013 Feb 13.

PMID:
23407494
5.

Seasonality in ocean microbial communities.

Giovannoni SJ, Vergin KL.

Science. 2012 Feb 10;335(6069):671-6. doi: 10.1126/science.1198078. Review.

PMID:
22323811
6.

Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids.

Treusch AH, Demir-Hilton E, Vergin KL, Worden AZ, Carlson CA, Donatz MG, Burton RM, Giovannoni SJ.

ISME J. 2012 Mar;6(3):481-92. doi: 10.1038/ismej.2011.117. Epub 2011 Sep 29.

7.

DNA phosphorothioation is widespread and quantized in bacterial genomes.

Wang L, Chen S, Vergin KL, Giovannoni SJ, Chan SW, DeMott MS, Taghizadeh K, Cordero OX, Cutler M, Timberlake S, Alm EJ, Polz MF, Pinhassi J, Deng Z, Dedon PC.

Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2963-8. doi: 10.1073/pnas.1017261108. Epub 2011 Feb 1.

8.

Genome sequence of the Marine Janibacter Sp. Strain HTCC2649.

Thrash JC, Cho JC, Bertagnolli AD, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ.

J Bacteriol. 2011 Jan;193(2):584-5. doi: 10.1128/JB.01298-10. Epub 2010 Nov 12.

9.

Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae.

Oh HM, Kang I, Yang SJ, Jang Y, Vergin KL, Giovannoni SJ, Cho JC.

J Bacteriol. 2011 Jan;193(1):303-4. doi: 10.1128/JB.01207-10. Epub 2010 Oct 29.

10.

Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order "Parvularculales" in the class Alphaproteobacteria.

Oh HM, Kang I, Vergin KL, Kang D, Rhee KH, Giovannoni SJ, Cho JC.

J Bacteriol. 2011 Jan;193(1):305-6. doi: 10.1128/JB.01205-10. Epub 2010 Oct 29.

11.

Genome sequence of strain HTCC2083, a novel member of the marine clade Roseobacter.

Kang I, Vergin KL, Oh HM, Choi A, Giovannoni SJ, Cho JC.

J Bacteriol. 2011 Jan;193(1):319-20. doi: 10.1128/JB.01268-10. Epub 2010 Oct 29.

12.

Genome sequence of Oceanicaulis sp. strain HTCC2633, isolated from the Western Sargasso Sea.

Oh HM, Kang I, Vergin KL, Lee K, Giovannoni SJ, Cho JC.

J Bacteriol. 2011 Jan;193(1):317-8. doi: 10.1128/JB.01267-10. Epub 2010 Oct 29.

13.

Genome sequence of the marine alphaproteobacterium HTCC2150, assigned to the Roseobacter clade.

Kang I, Oh HM, Vergin KL, Giovannoni SJ, Cho JC.

J Bacteriol. 2010 Dec;192(23):6315-6. doi: 10.1128/JB.01088-10. Epub 2010 Oct 1.

14.

Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera.

Thrash JC, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ.

J Bacteriol. 2010 Oct;192(20):5552-3. doi: 10.1128/JB.00873-10. Epub 2010 Aug 20.

15.

Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria.

Thrash JC, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ.

J Bacteriol. 2010 Jul;192(14):3842-3. doi: 10.1128/JB.00511-10. Epub 2010 May 14.

16.

Genome sequence of the novel marine member of the Gammaproteobacteria strain HTCC5015.

Thrash JC, Stingl U, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ.

J Bacteriol. 2010 Jul;192(14):3838-9. doi: 10.1128/JB.00510-10. Epub 2010 May 14.

17.

Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta).

Thrash JC, Cho JC, Vergin KL, Giovannoni SJ.

J Bacteriol. 2010 Jul;192(13):3549-50. doi: 10.1128/JB.00412-10. Epub 2010 Apr 23.

18.

Genome sequence of Lentisphaera araneosa HTCC2155T, the type species of the order Lentisphaerales in the phylum Lentisphaerae.

Thrash JC, Cho JC, Vergin KL, Morris RM, Giovannoni SJ.

J Bacteriol. 2010 Jun;192(11):2938-9. doi: 10.1128/JB.00208-10. Epub 2010 Apr 2.

19.

Seasonality and vertical structure of microbial communities in an ocean gyre.

Treusch AH, Vergin KL, Finlay LA, Donatz MG, Burton RM, Carlson CA, Giovannoni SJ.

ISME J. 2009 Oct;3(10):1148-63. doi: 10.1038/ismej.2009.60. Epub 2009 Jun 4.

PMID:
19494846
20.

The small genome of an abundant coastal ocean methylotroph.

Giovannoni SJ, Hayakawa DH, Tripp HJ, Stingl U, Givan SA, Cho JC, Oh HM, Kitner JB, Vergin KL, Rappé MS.

Environ Microbiol. 2008 Jul;10(7):1771-82. doi: 10.1111/j.1462-2920.2008.01598.x. Epub 2008 Apr 3.

PMID:
18393994
21.

High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11).

Vergin KL, Tripp HJ, Wilhelm LJ, Denver DR, Rappé MS, Giovannoni SJ.

Environ Microbiol. 2007 Oct;9(10):2430-40.

PMID:
17803769
22.

Dilution-to-extinction culturing of psychrotolerant planktonic bacteria from permanently ice-covered lakes in the McMurdo Dry Valleys, Antarctica.

Stingl U, Cho JC, Foo W, Vergin KL, Lanoil B, Giovannoni SJ.

Microb Ecol. 2008 Apr;55(3):395-405. Epub 2007 Jul 11.

PMID:
17623231
23.

Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria.

Cho JC, Stapels MD, Morris RM, Vergin KL, Schwalbach MS, Givan SA, Barofsky DF, Giovannoni SJ.

Environ Microbiol. 2007 Jun;9(6):1456-63.

PMID:
17504483
24.

The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin.

Stingl U, Desiderio RA, Cho JC, Vergin KL, Giovannoni SJ.

Appl Environ Microbiol. 2007 Apr;73(7):2290-6. Epub 2007 Feb 9.

25.

Proteorhodopsin in the ubiquitous marine bacterium SAR11.

Giovannoni SJ, Bibbs L, Cho JC, Stapels MD, Desiderio R, Vergin KL, Rappé MS, Laney S, Wilhelm LJ, Tripp HJ, Mathur EJ, Barofsky DF.

Nature. 2005 Nov 3;438(7064):82-5.

PMID:
16267553
26.

Genome streamlining in a cosmopolitan oceanic bacterium.

Giovannoni SJ, Tripp HJ, Givan S, Podar M, Vergin KL, Baptista D, Bibbs L, Eads J, Richardson TH, Noordewier M, Rappé MS, Short JM, Carrington JC, Mathur EJ.

Science. 2005 Aug 19;309(5738):1242-5.

27.
28.

SAR11 clade dominates ocean surface bacterioplankton communities.

Morris RM, Rappé MS, Connon SA, Vergin KL, Siebold WA, Carlson CA, Giovannoni SJ.

Nature. 2002 Dec 19-26;420(6917):806-10.

PMID:
12490947
29.

Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.

Rappé MS, Connon SA, Vergin KL, Giovannoni SJ.

Nature. 2002 Aug 8;418(6898):630-3.

PMID:
12167859
30.

Streamlined method to analyze 16S rRNA gene clone libraries.

Vergin KL, Rappé MS, Giovannoni SJ.

Biotechniques. 2001 May;30(5):938-40, 943-4. No abstract available.

PMID:
11355353
31.

Interspecies recombination between enterococci: genetic and phenotypic diversity of vancomycin-resistant transconjugants.

McAshan SK, Vergin KL, Giovannoni SJ, Thaler DS.

Microb Drug Resist. 1999 Summer;5(2):101-12.

PMID:
10432271
32.

Immunochemical detection and isolation of DNA from metabolically active bacteria.

Urbach E, Vergin KL, Giovannoni SJ.

Appl Environ Microbiol. 1999 Mar;65(3):1207-13.

33.

Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales.

Vergin KL, Urbach E, Stein JL, DeLong EF, Lanoil BD, Giovannoni SJ.

Appl Environ Microbiol. 1998 Aug;64(8):3075-8.

35.

A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer.

Wright TD, Vergin KL, Boyd PW, Giovannoni SJ.

Appl Environ Microbiol. 1997 Apr;63(4):1441-8.

36.

16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria.

Giovannoni SJ, Rappé MS, Vergin KL, Adair NL.

Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):7979-84.

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