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Items: 1 to 50 of 126

1.

Identification of Putative Early Atherosclerosis Biomarkers by Unsupervised Deconvolution of Heterogeneous Vascular Proteomes.

Parker SJ, Chen L, Spivia W, Saylor G, Mao C, Venkatraman V, Holewinski RJ, Mastali M, Pandey R, Athas G, Yu G, Fu Q, Troxlair D, Vander Heide R, Herrington D, Van Eyk JE, Wang Y.

J Proteome Res. 2020 Mar 23. doi: 10.1021/acs.jproteome.0c00118. [Epub ahead of print]

PMID:
32202800
2.

A Dual Workflow to Improve the Proteomic Coverage in Plasma Using Data-Independent Acquisition-MS.

Zhang S, Raedschelders K, Venkatraman V, Huang L, Holewinski R, Fu Q, Van Eyk JE.

J Proteome Res. 2020 Mar 30. doi: 10.1021/acs.jproteome.9b00607. [Epub ahead of print]

PMID:
32176508
3.

Gradient of Tissue Injury after Stroke: Rethinking the Infarct versus Noninfarcted Dichotomy.

Ng F, Venkatraman V, Parsons M, Bivard A, Sharma G, Churilov L, Desmond P, Davis SM, Yassi N, Campbell B.

Cerebrovasc Dis. 2020;49(1):32-38. doi: 10.1159/000505847. Epub 2020 Feb 18.

PMID:
32069458
4.

Clinical Features of Nontraumatic Posterior Dislocation of Crystalline Lens.

Kumawat D, Sahay P, Chawla R, Venkatraman V, Venkatesh P, Khokhar S.

Ophthalmol Retina. 2019 Dec 24. pii: S2468-6530(19)30688-8. doi: 10.1016/j.oret.2019.12.016. [Epub ahead of print] No abstract available.

PMID:
32063516
5.

Phthalate metabolites in harbor porpoises (Phocoena phocoena) from Norwegian coastal waters.

Rian MB, Vike-Jonas K, Gonzalez SV, Ciesielski TM, Venkatraman V, Lindstrøm U, Jenssen BM, Asimakopoulos AG.

Environ Int. 2020 Apr;137:105525. doi: 10.1016/j.envint.2020.105525. Epub 2020 Feb 3.

6.

Highly efficient cellulose dissolution by alkaline ionic liquids.

Lethesh KC, Evjen S, Venkatraman V, Shah SN, Fiksdahl A.

Carbohydr Polym. 2020 Feb 1;229:115594. doi: 10.1016/j.carbpol.2019.115594. Epub 2019 Nov 11.

PMID:
31826468
7.

Re: Non-radiation occupational hazards and health issues faced by radiologists - A cross-sectional study of indian radiologists' by Kawthalkar AS et al.

Venkatraman VI, Kokilavani J.

Indian J Radiol Imaging. 2019 Jul-Sep;29(3):337-338. doi: 10.4103/ijri.IJRI_172_19. Epub 2019 Oct 30. No abstract available.

8.

Prediction of Absorption Spectrum Shifts in Dyes Adsorbed on Titania.

Venkatraman V, Yemene AE, de Mello J.

Sci Rep. 2019 Nov 18;9(1):16983. doi: 10.1038/s41598-019-53534-2.

9.

Hydroxyl Functionalized Pyridinium Ionic Liquids: Experimental and Theoretical Study on Physicochemical and Electrochemical Properties.

Lethesh KC, Evjen S, Raj JJ, Roux DCD, Venkatraman V, Jayasayee K, Fiksdahl A.

Front Chem. 2019 Sep 18;7:625. doi: 10.3389/fchem.2019.00625. eCollection 2019.

10.

Mining the Proteome Associated with Rheumatic and Autoimmune Diseases.

Ruiz-Romero C, Lam MPY, Nilsson P, Önnerfjord P, Utz PJ, Van Eyk JE, Venkatraman V, Fert-Bober J, Watt FE, Blanco FJ.

J Proteome Res. 2019 Dec 6;18(12):4231-4239. doi: 10.1021/acs.jproteome.9b00360. Epub 2019 Oct 23.

PMID:
31599600
11.

Establishing Predictive Models for Solvatochromic Parameters of Ionic Liquids.

Venkatraman V, Lethesh KC.

Front Chem. 2019 Sep 3;7:605. doi: 10.3389/fchem.2019.00605. eCollection 2019.

12.

DENOPTIM: Software for Computational de Novo Design of Organic and Inorganic Molecules.

Foscato M, Venkatraman V, Jensen VR.

J Chem Inf Model. 2019 Oct 28;59(10):4077-4082. doi: 10.1021/acs.jcim.9b00516. Epub 2019 Sep 18.

PMID:
31479254
13.

Clinical Integration of Automated Processing for Brain Quantitative Susceptibility Mapping: Multi-Site Reproducibility and Single-Site Robustness.

Spincemaille P, Liu Z, Zhang S, Kovanlikaya I, Ippoliti M, Makowski M, Watts R, de Rochefort L, Venkatraman V, Desmond P, Santin MD, Lehéricy S, Kopell BH, Péran P, Wang Y.

J Neuroimaging. 2019 Nov;29(6):689-698. doi: 10.1111/jon.12658. Epub 2019 Aug 4.

PMID:
31379055
14.

Effect of a 24-month physical activity program on brain changes in older adults at risk of Alzheimer's disease: the AIBL active trial.

Venkatraman VK, Sanderson A, Cox KL, Ellis KA, Steward C, Phal PM, Gorelik A, Sharman MJ, Villemagne VL, Lai M, Cyarto EV, Merkel B, Ames D, Szoeke C, Rowe CC, Masters CL, Lautenschlager NT, Desmond PM.

Neurobiol Aging. 2020 May;89:132-141. doi: 10.1016/j.neurobiolaging.2019.02.030. Epub 2019 May 27.

PMID:
31324405
15.

Association between structural changes in brain with muscle function in sarcopenic older women: the women's healthy ageing project (WHAP).

Hassan EB, Szoeke C, Vogrin S, Phu S, Venkatraman V, Desmond P, Steward C, Duque G.

J Musculoskelet Neuronal Interact. 2019 Jun 1;19(2):136-141.

16.

Ultra-widefield fundus fluorescein angiography in pediatric retinal vascular diseases.

Temkar S, Azad SV, Chawla R, Damodaran S, Garg G, Regani H, Nawazish S, Raj N, Venkatraman V.

Indian J Ophthalmol. 2019 Jun;67(6):788-794. doi: 10.4103/ijo.IJO_1688_18.

17.

Mapping Citrullinated Sites in Multiple Organs of Mice Using Hypercitrullinated Library.

Fert-Bober J, Venkatraman V, Hunter CL, Liu R, Crowgey EL, Pandey R, Holewinski RJ, Stotland A, Berman BP, Van Eyk JE.

J Proteome Res. 2019 May 3;18(5):2270-2278. doi: 10.1021/acs.jproteome.9b00118. Epub 2019 Apr 23.

PMID:
30990720
18.

Identifying High-Priority Proteins Across the Human Diseasome Using Semantic Similarity.

Lau E, Venkatraman V, Thomas CT, Wu JC, Van Eyk JE, Lam MPY.

J Proteome Res. 2018 Dec 7;17(12):4267-4278. doi: 10.1021/acs.jproteome.8b00393. Epub 2018 Oct 9.

19.

Benzotriazoles, benzothiazoles and trace elements in an urban road setting in Trondheim, Norway: Re-visiting the chemical markers of traffic pollution.

Asheim J, Vike-Jonas K, Gonzalez SV, Lierhagen S, Venkatraman V, Veivåg IS, Snilsberg B, Flaten TP, Asimakopoulos AG.

Sci Total Environ. 2019 Feb 1;649:703-711. doi: 10.1016/j.scitotenv.2018.08.299. Epub 2018 Aug 25.

PMID:
30176481
20.

Phospho-Proteomic Analysis of Cardiac Dyssynchrony and Resynchronization Therapy.

Stachowski MJ, Holewinski RJ, Grote E, Venkatraman V, Van Eyk JE, Kirk JA.

Proteomics. 2018 Oct;18(19):e1800079. doi: 10.1002/pmic.201800079. Epub 2018 Aug 30.

21.

Subthreshold Operation of Organic Electrochemical Transistors for Biosignal Amplification.

Venkatraman V, Friedlein JT, Giovannitti A, Maria IP, McCulloch I, McLeod RR, Rivnay J.

Adv Sci (Weinh). 2018 Jul 4;5(8):1800453. doi: 10.1002/advs.201800453. eCollection 2018 Aug.

22.

Proteomics reveals Rictor as a noncanonical TGF-β signaling target during aneurysm progression in Marfan mice.

Parker SJ, Stotland A, MacFarlane E, Wilson N, Orosco A, Venkatraman V, Madrid K, Gottlieb R, Dietz HC, Van Eyk JE.

Am J Physiol Heart Circ Physiol. 2018 Nov 1;315(5):H1112-H1126. doi: 10.1152/ajpheart.00089.2018. Epub 2018 Jul 13.

23.

Proteomic Architecture of Human Coronary and Aortic Atherosclerosis.

Herrington DM, Mao C, Parker SJ, Fu Z, Yu G, Chen L, Venkatraman V, Fu Y, Wang Y, Howard TD, Jun G, Zhao CF, Liu Y, Saylor G, Spivia WR, Athas GB, Troxclair D, Hixson JE, Vander Heide RS, Wang Y, Van Eyk JE.

Circulation. 2018 Jun 19;137(25):2741-2756. doi: 10.1161/CIRCULATIONAHA.118.034365.

24.

Local initiation conditions for water autoionization.

Moqadam M, Lervik A, Riccardi E, Venkatraman V, Alsberg BK, van Erp TS.

Proc Natl Acad Sci U S A. 2018 May 15;115(20):E4569-E4576. doi: 10.1073/pnas.1714070115. Epub 2018 Apr 30.

25.

The dye-sensitized solar cell database.

Venkatraman V, Raju R, Oikonomopoulos SP, Alsberg BK.

J Cheminform. 2018 Apr 3;10(1):18. doi: 10.1186/s13321-018-0272-0.

26.

Protein S-Nitrosylation Controls Glycogen Synthase Kinase 3β Function Independent of Its Phosphorylation State.

Wang SB, Venkatraman V, Crowgey EL, Liu T, Fu Z, Holewinski R, Ranek M, Kass DA, O'Rourke B, Van Eyk JE.

Circ Res. 2018 May 25;122(11):1517-1531. doi: 10.1161/CIRCRESAHA.118.312789. Epub 2018 Mar 21.

27.

Visual Outcomes and Clinical Manifestations of Pediatric Optic Neuritis in Indian Population: An Institutional Study.

Ambika S, Padmalakshmi K, Venkatraman V, Noronha OV.

J Neuroophthalmol. 2018 Dec;38(4):462-465. doi: 10.1097/WNO.0000000000000646.

PMID:
29554001
28.

The Influences of Described and Experienced Information on Adolescent Risky Decision Making.

Rosenbaum GM, Venkatraman V, Steinberg L, Chein JM.

Dev Rev. 2018 Mar;47:23-43. doi: 10.1016/j.dr.2017.09.003. Epub 2017 Oct 19.

29.

Computer Aided Solution for Automatic Segmenting and Measurements of Blood Leucocytes Using Static Microscope Images.

Abdulhay E, Mohammed MA, Ibrahim DA, Arunkumar N, Venkatraman V.

J Med Syst. 2018 Feb 17;42(4):58. doi: 10.1007/s10916-018-0912-y.

PMID:
29455440
30.

Molecular Profile of Priapism Associated with Low Nitric Oxide Bioavailability.

La Favor JD, Fu Z, Venkatraman V, Bivalacqua TJ, Van Eyk JE, Burnett AL.

J Proteome Res. 2018 Mar 2;17(3):1031-1040. doi: 10.1021/acs.jproteome.7b00657. Epub 2018 Feb 12.

31.

Designing High-Refractive Index Polymers Using Materials Informatics.

Venkatraman V, Alsberg BK.

Polymers (Basel). 2018 Jan 22;10(1). pii: E103. doi: 10.3390/polym10010103.

32.

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Keenan AB, Jenkins SL, Jagodnik KM, Koplev S, He E, Torre D, Wang Z, Dohlman AB, Silverstein MC, Lachmann A, Kuleshov MV, Ma'ayan A, Stathias V, Terryn R, Cooper D, Forlin M, Koleti A, Vidovic D, Chung C, Schürer SC, Vasiliauskas J, Pilarczyk M, Shamsaei B, Fazel M, Ren Y, Niu W, Clark NA, White S, Mahi N, Zhang L, Kouril M, Reichard JF, Sivaganesan S, Medvedovic M, Meller J, Koch RJ, Birtwistle MR, Iyengar R, Sobie EA, Azeloglu EU, Kaye J, Osterloh J, Haston K, Kalra J, Finkbiener S, Li J, Milani P, Adam M, Escalante-Chong R, Sachs K, Lenail A, Ramamoorthy D, Fraenkel E, Daigle G, Hussain U, Coye A, Rothstein J, Sareen D, Ornelas L, Banuelos M, Mandefro B, Ho R, Svendsen CN, Lim RG, Stocksdale J, Casale MS, Thompson TG, Wu J, Thompson LM, Dardov V, Venkatraman V, Matlock A, Van Eyk JE, Jaffe JD, Papanastasiou M, Subramanian A, Golub TR, Erickson SD, Fallahi-Sichani M, Hafner M, Gray NS, Lin JR, Mills CE, Muhlich JL, Niepel M, Shamu CE, Williams EH, Wrobel D, Sorger PK, Heiser LM, Gray JW, Korkola JE, Mills GB, LaBarge M, Feiler HS, Dane MA, Bucher E, Nederlof M, Sudar D, Gross S, Kilburn DF, Smith R, Devlin K, Margolis R, Derr L, Lee A, Pillai A.

Cell Syst. 2018 Jan 24;6(1):13-24. doi: 10.1016/j.cels.2017.11.001. Epub 2017 Nov 29. Review.

33.

Transient receptor potential channel 6 regulates abnormal cardiac S-nitrosylation in Duchenne muscular dystrophy.

Chung HS, Kim GE, Holewinski RJ, Venkatraman V, Zhu G, Bedja D, Kass DA, Van Eyk JE.

Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):E10763-E10771. doi: 10.1073/pnas.1712623114. Epub 2017 Nov 29.

34.

Reason's Enemy Is Not Emotion: Engagement of Cognitive Control Networks Explains Biases in Gain/Loss Framing.

Li R, Smith DV, Clithero JA, Venkatraman V, Carter RM, Huettel SA.

J Neurosci. 2017 Mar 29;37(13):3588-3598. doi: 10.1523/JNEUROSCI.3486-16.2017. Epub 2017 Mar 6.

35.

Dissociable frontostriatal white matter connectivity underlies reward and motor impulsivity.

Hampton WH, Alm KH, Venkatraman V, Nugiel T, Olson IR.

Neuroimage. 2017 Apr 15;150:336-343. doi: 10.1016/j.neuroimage.2017.02.021. Epub 2017 Feb 9.

36.

Mapping Biological Networks from Quantitative Data-Independent Acquisition Mass Spectrometry: Data to Knowledge Pipelines.

Crowgey EL, Matlock A, Venkatraman V, Fert-Bober J, Van Eyk JE.

Methods Mol Biol. 2017;1558:395-413. doi: 10.1007/978-1-4939-6783-4_19.

37.

Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems.

Lam MP, Venkatraman V, Xing Y, Lau E, Cao Q, Ng DC, Su AI, Ge J, Van Eyk JE, Ping P.

J Proteome Res. 2016 Nov 4;15(11):4126-4134. Epub 2016 Jul 19.

38.

Effect of peptide assay library size and composition in targeted data-independent acquisition-MS analyses.

Parker SJ, Venkatraman V, Van Eyk JE.

Proteomics. 2016 Aug;16(15-16):2221-37. doi: 10.1002/pmic.201600007.

PMID:
27432805
39.

Prevalence and clinical profile of fungal rhinosinusitis.

Suresh S, Arumugam D, Zacharias G, Palaninathan S, Vishwanathan R, Venkatraman V.

Allergy Rhinol (Providence). 2016 Jan;7(2):115-20. doi: 10.2500/ar.2016.7.0156. Epub 2016 Jun 21.

40.

Brain network changes and memory decline in aging.

Beason-Held LL, Hohman TJ, Venkatraman V, An Y, Resnick SM.

Brain Imaging Behav. 2017 Jun;11(3):859-873. doi: 10.1007/s11682-016-9560-3.

41.

Peripheral sphingolipids are associated with variation in white matter microstructure in older adults.

Gonzalez CE, Venkatraman VK, An Y, Landman BA, Davatzikos C, Ratnam Bandaru VV, Haughey NJ, Ferrucci L, Mielke MM, Resnick SM.

Neurobiol Aging. 2016 Jul;43:156-63. doi: 10.1016/j.neurobiolaging.2016.04.008. Epub 2016 Apr 21.

42.

Protein kinase A-dependent phosphorylation stimulates the transcriptional activity of hypoxia-inducible factor 1.

Bullen JW, Tchernyshyov I, Holewinski RJ, DeVine L, Wu F, Venkatraman V, Kass DL, Cole RN, Van Eyk J, Semenza GL.

Sci Signal. 2016 May 31;9(430):ra56. doi: 10.1126/scisignal.aaf0583.

43.

Discordant signaling and autophagy response to fasting in hearts of obese mice: Implications for ischemia tolerance.

Andres AM, Kooren JA, Parker SJ, Tucker KC, Ravindran N, Ito BR, Huang C, Venkatraman V, Van Eyk JE, Gottlieb RA, Mentzer RM Jr.

Am J Physiol Heart Circ Physiol. 2016 Jul 1;311(1):H219-28. doi: 10.1152/ajpheart.00041.2016. Epub 2016 May 6.

44.

KRAKENX: software for the generation of alignment-independent 3D descriptors.

Venkatraman V, Alsberg BK.

J Mol Model. 2016 Apr;22(4):93. doi: 10.1007/s00894-016-2957-5. Epub 2016 Mar 29.

PMID:
27023785
45.

Sleep Duration and Subsequent Cortical Thinning in Cognitively Normal Older Adults.

Spira AP, Gonzalez CE, Venkatraman VK, Wu MN, Pacheco J, Simonsick EM, Ferrucci L, Resnick SM.

Sleep. 2016 May 1;39(5):1121-8. doi: 10.5665/sleep.5768.

46.

Lower gray matter integrity is associated with greater lap time variation in high-functioning older adults.

Tian Q, Resnick SM, Landman BA, Huo Y, Venkatraman VK, Gonzalez CE, Simonsick EM, Shardell MD, Ferrucci L, Studenski SA.

Exp Gerontol. 2016 May;77:46-51. doi: 10.1016/j.exger.2016.02.009. Epub 2016 Feb 17.

47.

Methods for SWATH™: Data Independent Acquisition on TripleTOF Mass Spectrometers.

Holewinski RJ, Parker SJ, Matlock AD, Venkatraman V, Van Eyk JE.

Methods Mol Biol. 2016;1410:265-79. doi: 10.1007/978-1-4939-3524-6_16.

PMID:
26867750
48.

Artificial evolution of coumarin dyes for dye sensitized solar cells.

Venkatraman V, Abburu S, Alsberg BK.

Phys Chem Chem Phys. 2015 Nov 7;17(41):27672-82. doi: 10.1039/c5cp04624f.

PMID:
26428071
49.

The effect of age and microstructural white matter integrity on lap time variation and fast-paced walking speed.

Tian Q, Ferrucci L, Resnick SM, Simonsick EM, Shardell MD, Landman BA, Venkatraman VK, Gonzalez CE, Studenski SA.

Brain Imaging Behav. 2016 Sep;10(3):697-706. doi: 10.1007/s11682-015-9449-6.

50.

Dual Labeling Biotin Switch Assay to Reduce Bias Derived From Different Cysteine Subpopulations: A Method to Maximize S-Nitrosylation Detection.

Chung HS, Murray CI, Venkatraman V, Crowgey EL, Rainer PP, Cole RN, Bomgarden RD, Rogers JC, Balkan W, Hare JM, Kass DA, Van Eyk JE.

Circ Res. 2015 Oct 23;117(10):846-57. doi: 10.1161/CIRCRESAHA.115.307336. Epub 2015 Sep 3.

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