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Items: 23

1.

Reversible inhibition of the ClpP protease via an N-terminal conformational switch.

Vahidi S, Ripstein ZA, Bonomi M, Yuwen T, Mabanglo MF, Juravsky JB, Rizzolo K, Velyvis A, Houry WA, Vendruscolo M, Rubinstein JL, Kay LE.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6447-E6456. doi: 10.1073/pnas.1805125115. Epub 2018 Jun 25.

2.

Conserved conformational selection mechanism of Hsp70 chaperone-substrate interactions.

Sekhar A, Velyvis A, Zoltsman G, Rosenzweig R, Bouvignies G, Kay LE.

Elife. 2018 Feb 20;7. pii: e32764. doi: 10.7554/eLife.32764.

3.

ClpB N-terminal domain plays a regulatory role in protein disaggregation.

Rosenzweig R, Farber P, Velyvis A, Rennella E, Latham MP, Kay LE.

Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):E6872-81. doi: 10.1073/pnas.1512783112. Epub 2015 Nov 30.

4.

(13)CHD2-CEST NMR spectroscopy provides an avenue for studies of conformational exchange in high molecular weight proteins.

Rennella E, Huang R, Velyvis A, Kay LE.

J Biomol NMR. 2015 Oct;63(2):187-99. doi: 10.1007/s10858-015-9974-z. Epub 2015 Aug 14.

PMID:
26271302
5.

Measurement of active site ionization equilibria in the 670 kDa proteasome core particle using methyl-TROSY NMR.

Velyvis A, Kay LE.

J Am Chem Soc. 2013 Jun 26;135(25):9259-62. doi: 10.1021/ja403091c. Epub 2013 May 2.

PMID:
23800213
6.

An economical method for production of (2)H, (13)CH3-threonine for solution NMR studies of large protein complexes: application to the 670 kDa proteasome.

Velyvis A, Ruschak AM, Kay LE.

PLoS One. 2012;7(9):e43725. doi: 10.1371/journal.pone.0043725. Epub 2012 Sep 11.

7.

Quantifying millisecond exchange dynamics in proteins by CPMG relaxation dispersion NMR using side-chain 1H probes.

Hansen AL, Lundström P, Velyvis A, Kay LE.

J Am Chem Soc. 2012 Feb 15;134(6):3178-89. doi: 10.1021/ja210711v. Epub 2012 Feb 2.

PMID:
22300166
8.

Cross-validation of the structure of a transiently formed and low populated FF domain folding intermediate determined by relaxation dispersion NMR and CS-Rosetta.

Barette J, Velyvis A, Religa TL, Korzhnev DM, Kay LE.

J Phys Chem B. 2012 Jun 14;116(23):6637-44. doi: 10.1021/jp209974f. Epub 2011 Dec 23.

PMID:
22148426
9.

Requirement for kinase-induced conformational change in eukaryotic initiation factor 2alpha (eIF2alpha) restricts phosphorylation of Ser51.

Dey M, Velyvis A, Li JJ, Chiu E, Chiovitti D, Kay LE, Sicheri F, Dever TE.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4316-21. doi: 10.1073/pnas.1014872108. Epub 2011 Feb 28.

10.

A simple strategy for ¹³C, ¹H labeling at the Ile-γ2 methyl position in highly deuterated proteins.

Ruschak AM, Velyvis A, Kay LE.

J Biomol NMR. 2010 Nov;48(3):129-35. doi: 10.1007/s10858-010-9449-1. Epub 2010 Oct 14.

PMID:
20949307
11.

NMR characterization of copper-binding domains 4-6 of ATP7B .

Fatemi N, Korzhnev DM, Velyvis A, Sarkar B, Forman-Kay JD.

Biochemistry. 2010 Oct 5;49(39):8468-77. doi: 10.1021/bi1008535. Epub 2010 Sep 10.

PMID:
20799727
12.

Assignment of Ile, Leu, and Val methyl correlations in supra-molecular systems: an application to aspartate transcarbamoylase.

Velyvis A, Schachman HK, Kay LE.

J Am Chem Soc. 2009 Nov 18;131(45):16534-43. doi: 10.1021/ja906978r.

PMID:
19860411
13.

Application of methyl-TROSY NMR to test allosteric models describing effects of nucleotide binding to aspartate transcarbamoylase.

Velyvis A, Schachman HK, Kay LE.

J Mol Biol. 2009 Apr 3;387(3):540-7. doi: 10.1016/j.jmb.2009.01.066. Epub 2009 Feb 4.

PMID:
19302799
14.

The structure of alpha-parvin CH2-paxillin LD1 complex reveals a novel modular recognition for focal adhesion assembly.

Wang X, Fukuda K, Byeon IJ, Velyvis A, Wu C, Gronenborn A, Qin J.

J Biol Chem. 2008 Jul 25;283(30):21113-9. doi: 10.1074/jbc.M801270200. Epub 2008 May 28.

15.

Solution NMR of supramolecular complexes: providing new insights into function.

Sprangers R, Velyvis A, Kay LE.

Nat Methods. 2007 Sep;4(9):697-703.

PMID:
17762877
16.

A solution NMR study showing that active site ligands and nucleotides directly perturb the allosteric equilibrium in aspartate transcarbamoylase.

Velyvis A, Yang YR, Schachman HK, Kay LE.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):8815-20. Epub 2007 May 14.

17.

Variable control of Ets-1 DNA binding by multiple phosphates in an unstructured region.

Pufall MA, Lee GM, Nelson ML, Kang HS, Velyvis A, Kay LE, McIntosh LP, Graves BJ.

Science. 2005 Jul 1;309(5731):142-5.

18.

Structure of an ultraweak protein-protein complex and its crucial role in regulation of cell morphology and motility.

Vaynberg J, Fukuda T, Chen K, Vinogradova O, Velyvis A, Tu Y, Ng L, Wu C, Qin J.

Mol Cell. 2005 Feb 18;17(4):513-23.

19.

Structural and functional insights into PINCH LIM4 domain-mediated integrin signaling.

Velyvis A, Vaynberg J, Yang Y, Vinogradova O, Zhang Y, Wu C, Qin J.

Nat Struct Biol. 2003 Jul;10(7):558-64.

PMID:
12794636
20.

Assembly of the PINCH-ILK-CH-ILKBP complex precedes and is essential for localization of each component to cell-matrix adhesion sites.

Zhang Y, Chen K, Tu Y, Velyvis A, Yang Y, Qin J, Wu C.

J Cell Sci. 2002 Dec 15;115(Pt 24):4777-86.

21.

A structural mechanism of integrin alpha(IIb)beta(3) "inside-out" activation as regulated by its cytoplasmic face.

Vinogradova O, Velyvis A, Velyviene A, Hu B, Haas T, Plow E, Qin J.

Cell. 2002 Sep 6;110(5):587-97.

22.

Molecular views of redox regulation: three-dimensional structures of redox regulatory proteins and protein complexes.

Qin J, Yang Y, Velyvis A, Gronenborn A.

Antioxid Redox Signal. 2000 Winter;2(4):827-40. Review.

PMID:
11213487
23.

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