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Items: 29

1.

Role of Tmem163 in zinc-regulated insulin storage of MIN6 cells: Functional exploration of an Indian type 2 diabetes GWAS associated gene.

Chakraborty S, Vellarikkal SK, Sivasubbu S, Roy SS, Tandon N, Bharadwaj D.

Biochem Biophys Res Commun. 2019 Dec 5. pii: S0006-291X(19)32245-4. doi: 10.1016/j.bbrc.2019.11.117. [Epub ahead of print]

PMID:
31813547
2.

Saliva microbiome in primary Sjögren's syndrome reveals distinct set of disease-associated microbes.

Sharma D, Sandhya P, Vellarikkal SK, Surin AK, Jayarajan R, Verma A, Kumar A, Ravi R, Danda D, Sivasubbu S, Scaria V.

Oral Dis. 2019 Sep 12. doi: 10.1111/odi.13191. [Epub ahead of print]

PMID:
31514257
3.

Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial Cell Populations.

Kalluri AS, Vellarikkal SK, Edelman ER, Nguyen L, Subramanian A, Ellinor PT, Regev A, Kathiresan S, Gupta RM.

Circulation. 2019 Jul 9;140(2):147-163. doi: 10.1161/CIRCULATIONAHA.118.038362. Epub 2019 May 31.

PMID:
31146585
4.

A novel cathepsin D mutation in 2 siblings with late infantile neuronal ceroid lipofuscinosis.

Thottath J, Vellarikkal SK, Jayarajan R, Verma A, Manamel M, Singh A, Rajendran VR, Sivasubbu S, Scaria V.

Neurol Genet. 2019 Apr 11;5(3):e302. doi: 10.1212/NXG.0000000000000302. eCollection 2019 Jun. No abstract available.

5.

A genome-wide map of circular RNAs in adult zebrafish.

Sharma D, Sehgal P, Mathew S, Vellarikkal SK, Singh AR, Kapoor S, Jayarajan R, Scaria V, Sivasubbu S.

Sci Rep. 2019 Mar 5;9(1):3432. doi: 10.1038/s41598-019-39977-7.

6.

Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.

Mathew S, Sivadas A, Sehgal P, Kaushik K, Vellarikkal SK, Scaria V, Sivasubbu S.

Methods Mol Biol. 2019;1912:77-110. doi: 10.1007/978-1-4939-8982-9_4.

PMID:
30635891
7.

Identification of novel circadian transcripts in the zebrafish retina.

Ramasamy S, Sharma S, Iyengar BR, Vellarikkal SK, Sivasubbu S, Maiti S, Pillai B.

J Exp Biol. 2019 Jan 10;222(Pt 1). pii: jeb192195. doi: 10.1242/jeb.192195.

8.

SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes.

Hariprakash JM, Vellarikkal SK, Verma A, Ranawat AS, Jayarajan R, Ravi R, Kumar A, Dixit V, Sivadas A, Kashyap AK, Senthivel V, Sehgal P, Mahadevan V, Scaria V, Sivasubbu S.

Database (Oxford). 2018 Jan 1;2018:1-10. doi: 10.1093/database/bay080.

9.

Genotype-Phenotype Correlations of Dystrophic Epidermolysis Bullosa in India: Experience from a Tertiary Care Centre.

Yenamandra VK, Vellarikkal SK, Chowdhury MR, Jayarajan R, Verma A, Scaria V, Sivasubbu S, Ray SB, Dinda AK, Kabra M, Sharma VK, Sethuraman G.

Acta Derm Venereol. 2018 Oct 10;98(9):873-879. doi: 10.2340/00015555-2929.

10.

A founder mutation MLC1 c.736delA associated with megalencephalic leukoencephalopathy with subcortical cysts-1 in north Indian kindred.

Vellarikkal SK, Jayarajan R, Verma A, Ravi R, Senthilvel V, Kumar A, Saini L, Gulati S, Lal M, Mathur A, Chhetri MK, Faruq M, Scaria V, Sivasubbu S.

Clin Genet. 2018 Aug;94(2):271-273. doi: 10.1111/cge.13251. Epub 2018 Apr 18. No abstract available.

PMID:
29667716
11.

Whole exome sequencing in a multi-generation family from India reveals a genetic variation c.10C>T (p.Gln4Ter) in keratin 5 gene associated with Dowling-Degos disease.

Virmani N, Vellarikkal SK, Verma A, Jayarajan R, Sakhiya J, Desai C, Sivasubbu S, Scaria V.

Indian J Dermatol Venereol Leprol. 2018 May-Jun;84(3):344-346. doi: 10.4103/ijdvl.IJDVL_268_17. No abstract available.

12.

Utility of whole-exome sequencing in detecting novel compound heterozygous mutations in COL7A1 among families with severe recessive dystrophic epidermolysis bullosa in India - implications on diagnosis, prognosis and prenatal testing.

Mahajan R, Vellarikkal SK, Handa S, Verma A, Jayarajan R, Kumar A, De D, Kaur J, Panigrahi I, Vineeth VS, Sivasubbu S, Scaria V.

J Eur Acad Dermatol Venereol. 2018 Dec;32(12):e433-e435. doi: 10.1111/jdv.14909. Epub 2018 Aug 14. No abstract available.

PMID:
29512197
13.

Organellar transcriptome sequencing reveals mitochondrial localization of nuclear encoded transcripts.

Sabharwal A, Sharma D, Vellarikkal SK, Jayarajan R, Verma A, Senthivel V, Scaria V, Sivasubbu S.

Mitochondrion. 2019 May;46:59-68. doi: 10.1016/j.mito.2018.02.007. Epub 2018 Feb 24.

PMID:
29486245
14.

RNA secondary structure profiling in zebrafish reveals unique regulatory features.

Kaushik K, Sivadas A, Vellarikkal SK, Verma A, Jayarajan R, Pandey S, Sethi T, Maiti S, Scaria V, Sivasubbu S.

BMC Genomics. 2018 Feb 15;19(1):147. doi: 10.1186/s12864-018-4497-0.

15.

Pharmacogenetic landscape of DPYD variants in south Asian populations by integration of genome-scale data.

Hariprakash JM, Vellarikkal SK, Keechilat P, Verma A, Jayarajan R, Dixit V, Ravi R, Senthivel V, Kumar A, Sehgal P, Sonakar AK, Ambawat S, Giri AK, Philip A, Sivadas A, Faruq M, Bharadwaj D, Sivasubbu S, Scaria V.

Pharmacogenomics. 2018 Feb;19(3):227-241. doi: 10.2217/pgs-2017-0101. Epub 2017 Dec 14.

PMID:
29239269
16.

Egyptian tale from India: application of whole-exome sequencing in diagnosis of atypical familial Mediterranean fever.

Sandhya P, Vellarikkal SK, Nair A, Ravi R, Mathew J, Jayarajan R, Kumar A, Verma A, Sivadas A, Danda D, Sivasubbu S, Scaria V.

Int J Rheum Dis. 2017 Nov;20(11):1770-1775. doi: 10.1111/1756-185X.13042. Epub 2017 Feb 17.

PMID:
28211254
17.

Unilateral monomorphic hypopigmented macules: A variant of Darier disease.

Sakhiya J, Virmani NC, Sharma YK, Khopkar U, Vellarikkal SK.

Indian J Dermatol Venereol Leprol. 2017 May-Jun;83(3):369-371. doi: 10.4103/0378-6323.199580. No abstract available.

18.

Application of whole exome sequencing in elucidating the phenotype and genotype spectrum of junctional epidermolysis bullosa: A preliminary experience of a tertiary care centre in India.

Yenamandra VK, Vellarikkal SK, Kumar M, Chowdhury MR, Jayarajan R, Verma A, Scaria V, Sivasubbu S, Ray SB, Dinda AK, Kabra M, Kaur P, Sharma VK, Sethuraman G.

J Dermatol Sci. 2017 Apr;86(1):30-36. doi: 10.1016/j.jdermsci.2016.12.020. Epub 2016 Dec 29.

PMID:
28087116
19.

Aptamer-Assisted Detection of the Altered Expression of Estrogen Receptor Alpha in Human Breast Cancer.

Ahirwar R, Vellarikkal SK, Sett A, Sivasubbu S, Scaria V, Bora U, Borthakur BB, Kataki AC, Sharma JD, Nahar P.

PLoS One. 2016 Apr 4;11(4):e0153001. doi: 10.1371/journal.pone.0153001. eCollection 2016.

20.

Comparative whole-genome analysis of clinical isolates reveals characteristic architecture of Mycobacterium tuberculosis pangenome.

Periwal V, Patowary A, Vellarikkal SK, Gupta A, Singh M, Mittal A, Jeyapaul S, Chauhan RK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K, Chauhan DS, Sivasubbu S, Scaria V.

PLoS One. 2015 Apr 8;10(4):e0122979. doi: 10.1371/journal.pone.0122979. eCollection 2015.

21.

Erratum for Behera et al., Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India.

Behera BK, Das P, Maharana J, Paria P, Mandal SN, Meena DK, Sharma AP, Jayarajan R, Dixit V, Verma A, Vellarikkal SK, Scaria V, Sivasubbu S, Rao AR, Mohapatra T.

Genome Announc. 2015 Feb 19;3(1). pii: e00123-15. doi: 10.1128/genomeA.00123-15. No abstract available.

22.

mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets.

Vellarikkal SK, Dhiman H, Joshi K, Hasija Y, Sivasubbu S, Scaria V.

Hum Mutat. 2015 Apr;36(4):419-24. doi: 10.1002/humu.22767.

PMID:
25677119
23.

Whole-exome sequencing solves diagnostic dilemma in a rare case of sporadic acrokeratosis verruciformis.

Gupta A, Sharma YK, Vellarikkal SK, Jayarajan R, Dixit V, Verma A, Sivasubbu S, Scaria V.

J Eur Acad Dermatol Venereol. 2016 Apr;30(4):695-7. doi: 10.1111/jdv.12983. Epub 2015 Jan 26. No abstract available.

PMID:
25622760
24.

Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India.

Behera BK, Das P, Maharana J, Paria P, Mandal SN, Meena DK, Sharma AP, Jayarajan R, Dixit V, Verma A, Vellarikkal SK, Scaria V, Sivasubbu S, Rao AR, Mohapatra T.

Genome Announc. 2015 Jan 8;3(1). pii: e01321-14. doi: 10.1128/genomeA.01321-14. Erratum in: Genome Announc. 2015 Feb 19;3(1):.

25.

Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome.

Rajpathak SN, Vellarikkal SK, Patowary A, Scaria V, Sivasubbu S, Deobagkar DD.

PLoS One. 2014 Jun 16;9(6):e100076. doi: 10.1371/journal.pone.0100076. eCollection 2014.

26.

The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation.

Singh M, Bhartiya D, Maini J, Sharma M, Singh AR, Kadarkaraisamy S, Rana R, Sabharwal A, Nanda S, Ramachandran A, Mittal A, Kapoor S, Sehgal P, Asad Z, Kaushik K, Vellarikkal SK, Jagga D, Muthuswami M, Chauhan RK, Leonard E, Priyadarshini R, Halimani M, Malhotra S, Patowary A, Vishwakarma H, Joshi P, Bhardwaj V, Bhaumik A, Bhatt B, Jha A, Kumar A, Budakoti P, Lalwani MK, Meli R, Jalali S, Joshi K, Pal K, Dhiman H, Laddha SV, Jadhav V, Singh N, Pandey V, Sachidanandan C, Ekker SC, Klee EW, Scaria V, Sivasubbu S.

Database (Oxford). 2014 Feb 26;2014:bau011. doi: 10.1093/database/bau011. Print 2014.

27.

Exome sequencing reveals a novel mutation, p.L325H, in the KRT5 gene associated with autosomal dominant Epidermolysis Bullosa Simplex Koebner type in a large family from western India.

Vellarikkal SK, Patowary A, Singh M, Kumari R, Faruq M, Master DC, Sivasubbu S, Scaria V.

Hum Genome Var. 2014 Sep 4;1:14007. doi: 10.1038/hgv.2014.7. eCollection 2014.

28.

Draft Genome Sequence of a Multidrug-Resistant Clinical Isolate of Mycobacterium tuberculosis Belonging to a Novel Spoligotype.

Vellarikkal SK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K; Open Source Drug Discovery Consortium, Chauhan DS, Sivasubbu S, Scaria V.

Genome Announc. 2013 Nov 21;1(6). pii: e00965-13. doi: 10.1128/genomeA.00965-13.

29.

Draft Genome Sequence of Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolate OSDD515, Belonging to the Uganda I Genotype.

Vellarikkal SK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K; Open Source Drug Discovery Consortium, Chauhan DS, Sivasubbu S, Scaria V.

Genome Announc. 2013 Nov 21;1(6). pii: e00750-13. doi: 10.1128/genomeA.00750-13.

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