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Neuro-Immune Cell Units: A New Paradigm in Physiology.

Godinho-Silva C, Cardoso F, Veiga-Fernandes H.

Annu Rev Immunol. 2019 Apr 26;37:19-46. doi: 10.1146/annurev-immunol-042718-041812. Epub 2018 Oct 31.


Neuro-immune regulation of mucosal physiology.

Chesné J, Cardoso V, Veiga-Fernandes H.

Mucosal Immunol. 2019 Jan;12(1):10-20. doi: 10.1038/s41385-018-0063-y. Epub 2018 Aug 8. Review.


Neuroendocrine Cells Take Your Breath Away.

Klein Wolterink RGJ, Pirzgalska RM, Veiga-Fernandes H.

Immunity. 2018 Jul 17;49(1):9-11. doi: 10.1016/j.immuni.2018.06.010.


Neuronal-immune system cross-talk in homeostasis.

Veiga-Fernandes H, Artis D.

Science. 2018 Mar 30;359(6383):1465-1466. doi: 10.1126/science.aap9598. No abstract available.


Oxysterol Sensing through the Receptor GPR183 Promotes the Lymphoid-Tissue-Inducing Function of Innate Lymphoid Cells and Colonic Inflammation.

Emgård J, Kammoun H, García-Cassani B, Chesné J, Parigi SM, Jacob JM, Cheng HW, Evren E, Das S, Czarnewski P, Sleiers N, Melo-Gonzalez F, Kvedaraite E, Svensson M, Scandella E, Hepworth MR, Huber S, Ludewig B, Peduto L, Villablanca EJ, Veiga-Fernandes H, Pereira JP, Flavell RA, Willinger T.

Immunity. 2018 Jan 16;48(1):120-132.e8. doi: 10.1016/j.immuni.2017.11.020.


Group 1 Innate Lymphoid Cell Lineage Identity Is Determined by a cis-Regulatory Element Marked by a Long Non-coding RNA.

Mowel WK, McCright SJ, Kotzin JJ, Collet MA, Uyar A, Chen X, DeLaney A, Spencer SP, Virtue AT, Yang E, Villarino A, Kurachi M, Dunagin MC, Pritchard GH, Stein J, Hughes C, Fonseca-Pereira D, Veiga-Fernandes H, Raj A, Kambayashi T, Brodsky IE, O'Shea JJ, Wherry EJ, Goff LA, Rinn JL, Williams A, Flavell RA, Henao-Mejia J.

Immunity. 2017 Sep 19;47(3):435-449.e8. doi: 10.1016/j.immuni.2017.08.012.


Neuronal regulation of type 2 innate lymphoid cells via neuromedin U.

Cardoso V, Chesné J, Ribeiro H, García-Cassani B, Carvalho T, Bouchery T, Shah K, Barbosa-Morais NL, Harris N, Veiga-Fernandes H.

Nature. 2017 Sep 14;549(7671):277-281. doi: 10.1038/nature23469. Epub 2017 Sep 6.


HIV-2 infection is associated with preserved GALT homeostasis and epithelial integrity despite ongoing mucosal viral replication.

Fernandes SM, Pires AR, Matoso P, Ferreira C, Nunes-Cabaço H, Correia L, Valadas E, Poças J, Pacheco P, Veiga-Fernandes H, Foxall RB, Sousa AE.

Mucosal Immunol. 2018 Jan;11(1):236-248. doi: 10.1038/mi.2017.44. Epub 2017 May 17.


The S(c)ensory Immune System Theory.

Veiga-Fernandes H, Freitas AA.

Trends Immunol. 2017 Oct;38(10):777-788. doi: 10.1016/ Epub 2017 Mar 7. Review.


Neuroimmune regulation during intestinal development and homeostasis.

Veiga-Fernandes H, Pachnis V.

Nat Immunol. 2017 Feb;18(2):116-122. doi: 10.1038/ni.3634. Epub 2017 Jan 16. Review.


Interleukin-15-Dependent T-Cell-like Innate Intraepithelial Lymphocytes Develop in the Intestine and Transform into Lymphomas in Celiac Disease.

Ettersperger J, Montcuquet N, Malamut G, Guegan N, Lopez-Lastra S, Gayraud S, Reimann C, Vidal E, Cagnard N, Villarese P, Andre-Schmutz I, Gomes Domingues R, Godinho-Silva C, Veiga-Fernandes H, Lhermitte L, Asnafi V, Macintyre E, Cellier C, Beldjord K, Di Santo JP, Cerf-Bensussan N, Meresse B.

Immunity. 2016 Sep 20;45(3):610-625. doi: 10.1016/j.immuni.2016.07.018. Epub 2016 Sep 6.


Glial-cell-derived neuroregulators control type 3 innate lymphoid cells and gut defence.

Ibiza S, García-Cassani B, Ribeiro H, Carvalho T, Almeida L, Marques R, Misic AM, Bartow-McKenney C, Larson DM, Pavan WJ, Eberl G, Grice EA, Veiga-Fernandes H.

Nature. 2016 Jul 21;535(7612):440-443. doi: 10.1038/nature18644. Epub 2016 Jul 13.


Vitamin A Controls the Presence of RORγ+ Innate Lymphoid Cells and Lymphoid Tissue in the Small Intestine.

Goverse G, Labao-Almeida C, Ferreira M, Molenaar R, Wahlen S, Konijn T, Koning J, Veiga-Fernandes H, Mebius RE.

J Immunol. 2016 Jun 15;196(12):5148-55. doi: 10.4049/jimmunol.1501106. Epub 2016 May 9.


Neuro-Immune Interactions at Barrier Surfaces.

Veiga-Fernandes H, Mucida D.

Cell. 2016 May 5;165(4):801-11. doi: 10.1016/j.cell.2016.04.041. Review.


Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models.

Alden K, Timmis J, Andrews PS, Veiga-Fernandes H, Coles M.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Mar-Apr;14(2):431-442. doi: 10.1109/TCBB.2016.2527654. Epub 2016 Feb 11.


IL-9 Expression by Invariant NKT Cells Is Not Imprinted during Thymic Development.

Monteiro M, Agua-Doce A, Almeida CF, Fonseca-Pereira D, Veiga-Fernandes H, Graca L.

J Immunol. 2015 Oct 1;195(7):3463-71. doi: 10.4049/jimmunol.1403170. Epub 2015 Aug 21.


NFIL3 orchestrates the emergence of common helper innate lymphoid cell precursors.

Xu W, Domingues RG, Fonseca-Pereira D, Ferreira M, Ribeiro H, Lopez-Lastra S, Motomura Y, Moreira-Santos L, Bihl F, Braud V, Kee B, Brady H, Coles MC, Vosshenrich C, Kubo M, Di Santo JP, Veiga-Fernandes H.

Cell Rep. 2015 Mar 31;10(12):2043-54. doi: 10.1016/j.celrep.2015.02.057. Epub 2015 Mar 19.


Utilising a simulation platform to understand the effect of domain model assumptions.

Alden K, Andrews PS, Veiga-Fernandes H, Timmis J, Coles M.

Nat Comput. 2015;14(1):99-107.


Feeding immunity: skepticism, delicacies and delights.

Veldhoen M, Veiga-Fernandes H.

Nat Immunol. 2015 Mar;16(3):215-9. doi: 10.1038/ni.3100.


Using argument notation to engineer biological simulations with increased confidence.

Alden K, Andrews PS, Polack FA, Veiga-Fernandes H, Coles MC, Timmis J.

J R Soc Interface. 2015 Mar 6;12(104):20141059. doi: 10.1098/rsif.2014.1059.


The neurotrophic factor receptor RET regulates IL-10 production by in vitro polarised T helper 2 cells.

Almeida AR, Fonseca-Pereira D, Arroz-Madeira S, Ribeiro H, Labão-Almeida C, Veiga-Fernandes H.

Eur J Immunol. 2014 Dec;44(12):3605-13. doi: 10.1002/eji.201344422. Epub 2014 Oct 18.


The neurotrophic factor receptor RET drives haematopoietic stem cell survival and function.

Fonseca-Pereira D, Arroz-Madeira S, Rodrigues-Campos M, Barbosa IA, Domingues RG, Bento T, Almeida AR, Ribeiro H, Potocnik AJ, Enomoto H, Veiga-Fernandes H.

Nature. 2014 Oct 2;514(7520):98-101. doi: 10.1038/nature13498. Epub 2014 Jul 27.


Defining immune engagement thresholds for in vivo control of virus-driven lymphoproliferation.

Godinho-Silva C, Marques S, Fontinha D, Veiga-Fernandes H, Stevenson PG, Simas JP.

PLoS Pathog. 2014 Jun 26;10(6):e1004220. doi: 10.1371/journal.ppat.1004220. eCollection 2014 Jun.


Differentiation of type 1 ILCs from a common progenitor to all helper-like innate lymphoid cell lineages.

Klose CSN, Flach M, Möhle L, Rogell L, Hoyler T, Ebert K, Fabiunke C, Pfeifer D, Sexl V, Fonseca-Pereira D, Domingues RG, Veiga-Fernandes H, Arnold SJ, Busslinger M, Dunay IR, Tanriver Y, Diefenbach A.

Cell. 2014 Apr 10;157(2):340-356. doi: 10.1016/j.cell.2014.03.030.


Maternal retinoids control type 3 innate lymphoid cells and set the offspring immunity.

van de Pavert SA, Ferreira M, Domingues RG, Ribeiro H, Molenaar R, Moreira-Santos L, Almeida FF, Ibiza S, Barbosa I, Goverse G, Labão-Almeida C, Godinho-Silva C, Konijn T, Schooneman D, O'Toole T, Mizee MR, Habani Y, Haak E, Santori FR, Littman DR, Schulte-Merker S, Dzierzak E, Simas JP, Mebius RE, Veiga-Fernandes H.

Nature. 2014 Apr 3;508(7494):123-7. doi: 10.1038/nature13158. Epub 2014 Mar 19.


Enteric mucosa integrity in the presence of a preserved innate interleukin 22 compartment in HIV type 1-treated individuals.

Fernandes SM, Pires AR, Ferreira C, Foxall RB, Rino J, Santos C, Correia L, Poças J, Veiga-Fernandes H, Sousa AE.

J Infect Dis. 2014 Aug 15;210(4):630-40. doi: 10.1093/infdis/jiu126. Epub 2014 Mar 5.


Insight into lymphoid tissue morphogenesis.

Coles M, Veiga-Fernandes H.

Immunol Lett. 2013 Nov-Dec;156(1-2):46-53. doi: 10.1016/j.imlet.2013.08.001. Epub 2013 Aug 14. Review.


Essential, dose-dependent role for the transcription factor Gata3 in the development of IL-5+ and IL-13+ type 2 innate lymphoid cells.

Klein Wolterink RG, Serafini N, van Nimwegen M, Vosshenrich CA, de Bruijn MJ, Fonseca Pereira D, Veiga Fernandes H, Hendriks RW, Di Santo JP.

Proc Natl Acad Sci U S A. 2013 Jun 18;110(25):10240-5. doi: 10.1073/pnas.1217158110. Epub 2013 Jun 3.


Spartan: a comprehensive tool for understanding uncertainty in simulations of biological systems.

Alden K, Read M, Timmis J, Andrews PS, Veiga-Fernandes H, Coles M.

PLoS Comput Biol. 2013;9(2):e1002916. doi: 10.1371/journal.pcbi.1002916. Epub 2013 Feb 28. Erratum in: PLoS Comput Biol. 2013 Aug;9(8). doi:10.1371/annotation/cfcaffb6-8515-4595-b6cc-85b84703d7d5.


RET/GFRα signals are dispensable for thymic T cell development in vivo.

Almeida AR, Arroz-Madeira S, Fonseca-Pereira D, Ribeiro H, Lasrado R, Pachnis V, Veiga-Fernandes H.

PLoS One. 2012;7(12):e52949. doi: 10.1371/journal.pone.0052949. Epub 2012 Dec 27.


Colonic patch and colonic SILT development are independent and differentially regulated events.

Baptista AP, Olivier BJ, Goverse G, Greuter M, Knippenberg M, Kusser K, Domingues RG, Veiga-Fernandes H, Luster AD, Lugering A, Randall TD, Cupedo T, Mebius RE.

Mucosal Immunol. 2013 May;6(3):511-21. doi: 10.1038/mi.2012.90. Epub 2012 Sep 19.


Differential RET signaling pathways drive development of the enteric lymphoid and nervous systems.

Patel A, Harker N, Moreira-Santos L, Ferreira M, Alden K, Timmis J, Foster K, Garefalaki A, Pachnis P, Andrews P, Enomoto H, Milbrandt J, Pachnis V, Coles MC, Kioussis D, Veiga-Fernandes H.

Sci Signal. 2012 Jul 31;5(235):ra55. doi: 10.1126/scisignal.2002734.


Stroma cell priming in enteric lymphoid organ morphogenesis.

Ferreira M, Domingues RG, Veiga-Fernandes H.

Front Immunol. 2012 Jul 24;3:219. doi: 10.3389/fimmu.2012.00219. eCollection 2012.


Pairing experimentation and computational modeling to understand the role of tissue inducer cells in the development of lymphoid organs.

Alden K, Timmis J, Andrews PS, Veiga-Fernandes H, Coles MC.

Front Immunol. 2012 Jul 18;3:172. doi: 10.3389/fimmu.2012.00172. eCollection 2012.


Replication allows inactivation of a knocked-in locus control region in inappropriate cell lineages.

Menzel U, Ktistaki E, Tolaini M, Veiga-Fernandes H, Kioussis D.

Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16928-33. doi: 10.1073/pnas.1010317107. Epub 2010 Sep 13.


Cellular and molecular requirements in lymph node and Peyer's patch development.

Coles M, Kioussis D, Veiga-Fernandes H.

Prog Mol Biol Transl Sci. 2010;92:177-205. doi: 10.1016/S1877-1173(10)92008-5. Review.


Commentary on "lymphoid tissue inducer cells and the evolution of CD4 dependent high-affinity antibody responses".

Coles M, Kioussis D, Veiga-Fernandes H.

Prog Mol Biol Transl Sci. 2010;92:175-6. doi: 10.1016/S1877-1173(10)92016-4. No abstract available.


Life without geminin.

Karamitros D, Kotantaki P, Lygerou Z, Veiga-Fernandes H, Pachnis V, Kioussis D, Taraviras S.

Cell Cycle. 2010 Aug 15;9(16):3181-5. doi: 10.4161/cc.9.16.12554. Epub 2010 Aug 28.


EphB-ephrin-B2 interactions are required for thymus migration during organogenesis.

Foster KE, Gordon J, Cardenas K, Veiga-Fernandes H, Makinen T, Grigorieva E, Wilkinson DG, Blackburn CC, Richie E, Manley NR, Adams RH, Kioussis D, Coles MC.

Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13414-9. doi: 10.1073/pnas.1003747107. Epub 2010 Jul 8.


Visualisation of lymphoid organ development.

Veiga-Fernandes H, Foster K, Patel A, Coles M, Kioussis D.

Methods Mol Biol. 2010;616:161-79. doi: 10.1007/978-1-60761-461-6_11.


Natural killer receptors: the burden of a name.

Veiga-Fernandes H, Kioussis D, Coles M.

J Exp Med. 2010 Feb 15;207(2):269-72. doi: 10.1084/jem.20100105. Epub 2010 Feb 8.


Differential geminin requirement for proliferation of thymocytes and mature T cells.

Karamitros D, Kotantaki P, Lygerou Z, Veiga-Fernandes H, Pachnis V, Kioussis D, Taraviras S.

J Immunol. 2010 Mar 1;184(5):2432-41. doi: 10.4049/jimmunol.0901983. Epub 2010 Jan 27.


The basic leucine zipper transcription factor E4BP4 is essential for natural killer cell development.

Gascoyne DM, Long E, Veiga-Fernandes H, de Boer J, Williams O, Seddon B, Coles M, Kioussis D, Brady HJ.

Nat Immunol. 2009 Oct;10(10):1118-24. doi: 10.1038/ni.1787. Epub 2009 Sep 13. Erratum in: Nat Immunol. 2010 Jun;11(6):543.


Mll has a critical role in fetal and adult hematopoietic stem cell self-renewal.

McMahon KA, Hiew SY, Hadjur S, Veiga-Fernandes H, Menzel U, Price AJ, Kioussis D, Williams O, Brady HJ.

Cell Stem Cell. 2007 Sep 13;1(3):338-45. doi: 10.1016/j.stem.2007.07.002.


Position effect variegation and imprinting of transgenes in lymphocytes.

Williams A, Harker N, Ktistaki E, Veiga-Fernandes H, Roderick K, Tolaini M, Norton T, Williams K, Kioussis D.

Nucleic Acids Res. 2008 Apr;36(7):2320-9. doi: 10.1093/nar/gkn085. Epub 2008 Feb 22.


Contribution of neural crest-derived cells in the embryonic and adult thymus.

Foster K, Sheridan J, Veiga-Fernandes H, Roderick K, Pachnis V, Adams R, Blackburn C, Kioussis D, Coles M.

J Immunol. 2008 Mar 1;180(5):3183-9.


CD8 single-cell gene coexpression reveals three different effector types present at distinct phases of the immune response.

Peixoto A, Evaristo C, Munitic I, Monteiro M, Charbit A, Rocha B, Veiga-Fernandes H.

J Exp Med. 2007 May 14;204(5):1193-205. Epub 2007 May 7.


Tyrosine kinase receptor RET is a key regulator of Peyer's patch organogenesis.

Veiga-Fernandes H, Coles MC, Foster KE, Patel A, Williams A, Natarajan D, Barlow A, Pachnis V, Kioussis D.

Nature. 2007 Mar 29;446(7135):547-51. Epub 2007 Feb 25.


Role of T and NK cells and IL7/IL7r interactions during neonatal maturation of lymph nodes.

Coles MC, Veiga-Fernandes H, Foster KE, Norton T, Pagakis SN, Seddon B, Kioussis D.

Proc Natl Acad Sci U S A. 2006 Sep 5;103(36):13457-62. Epub 2006 Aug 24.

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