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Preparation of the Low Molecular Weight Serum Proteome for Mass Spectrometry Analysis.

Veenstra TD.

Methods Mol Biol. 2019;2024:95-102. doi: 10.1007/978-1-4939-9597-4_5.


Integrated proteotranscriptomics of breast cancer reveals globally increased protein-mRNA concordance associated with subtypes and survival.

Tang W, Zhou M, Dorsey TH, Prieto DA, Wang XW, Ruppin E, Veenstra TD, Ambs S.

Genome Med. 2018 Dec 3;10(1):94. doi: 10.1186/s13073-018-0602-x.


LC-MS-sMRM Method Development and Validation of Different Classes of Pain Panel Drugs and Analysis of Clinical Urine Samples.

Athar Masood M, Veenstra TD.

Basic Clin Pharmacol Toxicol. 2017 Aug 26. doi: 10.1111/bcpt.12877. [Epub ahead of print]


Quantitation of Monophosphorylated Lipid A in the Oil-in-Water Adjuvant Delivery Systems Using Transesterification and GC-MS.

Masood MA, Blonder J, Veenstra TD.

J Pharm Sci. 2017 Jul;106(7):1760-1763. doi: 10.1016/j.xphs.2017.02.034. Epub 2017 Mar 8.


Neuroproteomic tools for battling Alzheimer's disease.

Veenstra TD.

Proteomics. 2016 Nov;16(22):2847-2853. doi: 10.1002/pmic.201600211. Epub 2016 Oct 14. Review.


Microfilariae of Brugia malayi Inhibit the mTOR Pathway and Induce Autophagy in Human Dendritic Cells.

Narasimhan PB, Bennuru S, Meng Z, Cotton RN, Elliott KR, Ganesan S, McDonald-Fleming R, Veenstra TD, Nutman TB, Tolouei Semnani R.

Infect Immun. 2016 Aug 19;84(9):2463-72. doi: 10.1128/IAI.00174-16. Print 2016 Sep.


Estrogen metabolites in human corpus luteum physiology: differential effects on angiogenic activity.

Henríquez S, Kohen P, Xu X, Veenstra TD, Muñoz A, Palomino WA, Strauss JF 3rd, Devoto L.

Fertil Steril. 2016 Jul;106(1):230-237.e1. doi: 10.1016/j.fertnstert.2016.03.003. Epub 2016 Mar 17.


Identification and Validation of Loa loa Microfilaria-Specific Biomarkers: a Rational Design Approach Using Proteomics and Novel Immunoassays.

Drame PM, Meng Z, Bennuru S, Herrick JA, Veenstra TD, Nutman TB.

mBio. 2016 Feb 16;7(1):e02132-15. doi: 10.1128/mBio.02132-15.


Estrogen Metabolism and Risk of Postmenopausal Endometrial and Ovarian Cancer: the B ∼ FIT Cohort.

Dallal CM, Lacey JV Jr, Pfeiffer RM, Bauer DC, Falk RT, Buist DS, Cauley JA, Hue TF, LaCroix AZ, Tice JA, Veenstra TD, Xu X, Brinton LA; B∼FIT Research Group.

Horm Cancer. 2016 Feb;7(1):49-64. doi: 10.1007/s12672-015-0237-y. Epub 2016 Jan 4.


Association of Active and Sedentary Behaviors with Postmenopausal Estrogen Metabolism.

Dallal CM, Brinton LA, Matthews CE, Pfeiffer RM, Hartman TJ, Lissowska J, Falk RT, Garcia-Closas M, Xu X, Veenstra TD, Gierach GL.

Med Sci Sports Exerc. 2016 Mar;48(3):439-48. doi: 10.1249/MSS.0000000000000790.


A Proteomic Analysis of the Body Wall, Digestive Tract, and Reproductive Tract of Brugia malayi.

Morris CP, Bennuru S, Kropp LE, Zweben JA, Meng Z, Taylor RT, Chan K, Veenstra TD, Nutman TB, Mitre E.

PLoS Negl Trop Dis. 2015 Sep 14;9(9):e0004054. doi: 10.1371/journal.pntd.0004054. eCollection 2015.


Estrogen Metabolites Are Not Associated with Colorectal Cancer Risk in Postmenopausal Women.

Falk RT, Dallal CM, Lacey JV Jr, Bauer DC, Buist DS, Cauley JA, Hue TF, LaCroix AZ, Tice JA, Pfeiffer RM, Xu X, Veenstra TD, Brinton LA; B∼FIT Research Group.

Cancer Epidemiol Biomarkers Prev. 2015 Sep;24(9):1419-22. doi: 10.1158/1055-9965.EPI-15-0541. Epub 2015 Jun 23.


Assay reproducibility and interindividual variation for 15 serum estrogens and estrogen metabolites measured by liquid chromatography-tandem mass spectrometry.

Fuhrman BJ, Xu X, Falk RT, Dallal CM, Veenstra TD, Keefer LK, Graubard BI, Brinton LA, Ziegler RG, Gierach GL.

Cancer Epidemiol Biomarkers Prev. 2014 Dec;23(12):2649-57. doi: 10.1158/1055-9965.EPI-14-0438.


Proteostatic control of telomerase function through TRiC-mediated folding of TCAB1.

Freund A, Zhong FL, Venteicher AS, Meng Z, Veenstra TD, Frydman J, Artandi SE.

Cell. 2014 Dec 4;159(6):1389-403. doi: 10.1016/j.cell.2014.10.059. Epub 2014 Nov 20.


Sex steroid hormone metabolism in relation to risk of aggressive prostate cancer.

Black A, Pinsky PF, Grubb RL 3rd, Falk RT, Hsing AW, Chu L, Meyer T, Veenstra TD, Xu X, Yu K, Ziegler RG, Brinton LA, Hoover RN, Cook MB.

Cancer Epidemiol Biomarkers Prev. 2014 Nov;23(11):2374-82. doi: 10.1158/1055-9965.EPI-14-0700. Epub 2014 Sep 1.


Absolute quantitation of Met using mass spectrometry for clinical application: assay precision, stability, and correlation with MET gene amplification in FFPE tumor tissue.

Catenacci DV, Liao WL, Thyparambil S, Henderson L, Xu P, Zhao L, Rambo B, Hart J, Xiao SY, Bengali K, Uzzell J, Darfler M, Krizman DB, Cecchi F, Bottaro DP, Karrison T, Veenstra TD, Hembrough T, Burrows J.

PLoS One. 2014 Jul 1;9(7):e100586. doi: 10.1371/journal.pone.0100586. eCollection 2014.


COX-2 inhibition potentiates antiangiogenic cancer therapy and prevents metastasis in preclinical models.

Xu L, Stevens J, Hilton MB, Seaman S, Conrads TP, Veenstra TD, Logsdon D, Morris H, Swing DA, Patel NL, Kalen J, Haines DC, Zudaire E, St Croix B.

Sci Transl Med. 2014 Jun 25;6(242):242ra84. doi: 10.1126/scitranslmed.3008455.


Circulating estrogens and estrogens within the breast among postmenopausal BRCA1/2 mutation carriers.

Loud JT, Gierach GL, Veenstra TD, Falk RT, Nichols K, Guttmann A, Xu X, Greene MH, Gail MH.

Breast Cancer Res Treat. 2014 Feb;143(3):517-29. doi: 10.1007/s10549-013-2821-6. Epub 2014 Jan 18.


MYC-driven accumulation of 2-hydroxyglutarate is associated with breast cancer prognosis.

Terunuma A, Putluri N, Mishra P, Mathé EA, Dorsey TH, Yi M, Wallace TA, Issaq HJ, Zhou M, Killian JK, Stevenson HS, Karoly ED, Chan K, Samanta S, Prieto D, Hsu TY, Kurley SJ, Putluri V, Sonavane R, Edelman DC, Wulff J, Starks AM, Yang Y, Kittles RA, Yfantis HG, Lee DH, Ioffe OB, Schiff R, Stephens RM, Meltzer PS, Veenstra TD, Westbrook TF, Sreekumar A, Ambs S.

J Clin Invest. 2014 Jan;124(1):398-412. doi: 10.1172/JCI71180. Epub 2013 Dec 9.


An IKKα-nucleophosmin axis utilizes inflammatory signaling to promote genome integrity.

Xia X, Liu S, Xiao Z, Zhu F, Song NY, Zhou M, Liu B, Shen J, Nagashima K, Veenstra TD, Burkett S, Datla M, Willette-Brown J, Shen H, Hu Y.

Cell Rep. 2013 Dec 12;5(5):1243-55. doi: 10.1016/j.celrep.2013.10.046. Epub 2013 Nov 27.


Estrogen metabolism and breast cancer risk among postmenopausal women: a case-cohort study within B~FIT.

Dallal CM, Tice JA, Buist DS, Bauer DC, Lacey JV Jr, Cauley JA, Hue TF, Lacroix A, Falk RT, Pfeiffer RM, Fuhrman BJ, Veenstra TD, Xu X, Brinton LA; B~FIT Research Group.

Carcinogenesis. 2014 Feb;35(2):346-55. doi: 10.1093/carcin/bgt367. Epub 2013 Nov 8.


Preparation of the low molecular weight serum proteome for mass spectrometry analysis.

Waybright TJ, Chan KC, Veenstra TD, Xiao Z.

Methods Mol Biol. 2013;1061:279-89. doi: 10.1007/978-1-62703-589-7_17.


Bile acid signal-induced phosphorylation of small heterodimer partner by protein kinase Cζ is critical for epigenomic regulation of liver metabolic genes.

Seok S, Kanamaluru D, Xiao Z, Ryerson D, Choi SE, Suino-Powell K, Xu HE, Veenstra TD, Kemper JK.

J Biol Chem. 2013 Aug 9;288(32):23252-63. doi: 10.1074/jbc.M113.452037. Epub 2013 Jul 3.


SASH1 is a scaffold molecule in endothelial TLR4 signaling.

Dauphinee SM, Clayton A, Hussainkhel A, Yang C, Park YJ, Fuller ME, Blonder J, Veenstra TD, Karsan A.

J Immunol. 2013 Jul 15;191(2):892-901. doi: 10.4049/jimmunol.1200583. Epub 2013 Jun 17.


Prospective evaluation of serum sarcosine and risk of prostate cancer in the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial.

Koutros S, Meyer TE, Fox SD, Issaq HJ, Veenstra TD, Huang WY, Yu K, Albanes D, Chu LW, Andriole G, Hoover RN, Hsing AW, Berndt SI.

Carcinogenesis. 2013 Oct;34(10):2281-5. doi: 10.1093/carcin/bgt176. Epub 2013 May 22.


Phosphorylation of centromeric histone H3 variant regulates chromosome segregation in Saccharomyces cerevisiae.

Boeckmann L, Takahashi Y, Au WC, Mishra PK, Choy JS, Dawson AR, Szeto MY, Waybright TJ, Heger C, McAndrew C, Goldsmith PK, Veenstra TD, Baker RE, Basrai MA.

Mol Biol Cell. 2013 Jun;24(12):2034-44. doi: 10.1091/mbc.E12-12-0893. Epub 2013 May 1.


Relationship of serum estrogens and estrogen metabolites to postmenopausal breast cancer risk: a nested case-control study.

Falk RT, Brinton LA, Dorgan JF, Fuhrman BJ, Veenstra TD, Xu X, Gierach GL.

Breast Cancer Res. 2013 Apr 22;15(2):R34. doi: 10.1186/bcr3416.


Green tea intake is associated with urinary estrogen profiles in Japanese-American women.

Fuhrman BJ, Pfeiffer RM, Wu AH, Xu X, Keefer LK, Veenstra TD, Ziegler RG.

Nutr J. 2013 Feb 15;12:25. doi: 10.1186/1475-2891-12-25.


Urinary free bisphenol A and bisphenol A-glucuronide concentrations in newborns.

Nachman RM, Fox SD, Golden WC, Sibinga E, Veenstra TD, Groopman JD, Lees PS.

J Pediatr. 2013 Apr;162(4):870-2. doi: 10.1016/j.jpeds.2012.11.083. Epub 2013 Jan 11.


An integrated understanding of the physiological response to elevated extracellular phosphate.

Camalier CE, Yi M, Yu LR, Hood BL, Conrads KA, Lee YJ, Lin Y, Garneys LM, Bouloux GF, Young MR, Veenstra TD, Stephens RM, Colburn NH, Conrads TP, Beck GR Jr.

J Cell Physiol. 2013 Jul;228(7):1536-50. doi: 10.1002/jcp.24312.


Estrogen metabolism within the lung and its modulation by tobacco smoke.

Peng J, Xu X, Mace BE, Vanderveer LA, Workman LR, Slifker MJ, Sullivan PM, Veenstra TD, Clapper ML.

Carcinogenesis. 2013 Apr;34(4):909-15. doi: 10.1093/carcin/bgs402. Epub 2012 Dec 31.


Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study.

Flores R, Shi J, Fuhrman B, Xu X, Veenstra TD, Gail MH, Gajer P, Ravel J, Goedert JJ.

J Transl Med. 2012 Dec 21;10:253. doi: 10.1186/1479-5876-10-253.


CD44 Promotes intoxication by the clostridial iota-family toxins.

Wigelsworth DJ, Ruthel G, Schnell L, Herrlich P, Blonder J, Veenstra TD, Carman RJ, Wilkins TD, Van Nhieu GT, Pauillac S, Gibert M, Sauvonnet N, Stiles BG, Popoff MR, Barth H.

PLoS One. 2012;7(12):e51356. doi: 10.1371/journal.pone.0051356. Epub 2012 Dec 7.


Obesity-related hormones and endometrial cancer among postmenopausal women: a nested case-control study within the B~FIT cohort.

Dallal CM, Brinton LA, Bauer DC, Buist DS, Cauley JA, Hue TF, Lacroix A, Tice JA, Chia VM, Falk R, Pfeiffer R, Pollak M, Veenstra TD, Xu X, Lacey JV Jr; B~FIT Research Group.

Endocr Relat Cancer. 2013 Feb 18;20(1):151-60. doi: 10.1530/ERC-12-0229. Print 2013 Feb.


NANOG modulates stemness in human colorectal cancer.

Zhang J, Espinoza LA, Kinders RJ, Lawrence SM, Pfister TD, Zhou M, Veenstra TD, Thorgeirsson SS, Jessup JM.

Oncogene. 2013 Sep 12;32(37):4397-405. doi: 10.1038/onc.2012.461. Epub 2012 Oct 22.


Induced pluripotent stem cell model recapitulates pathologic hallmarks of Gaucher disease.

Panicker LM, Miller D, Park TS, Patel B, Azevedo JL, Awad O, Masood MA, Veenstra TD, Goldin E, Stubblefield BK, Tayebi N, Polumuri SK, Vogel SN, Sidransky E, Zambidis ET, Feldman RA.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):18054-9. doi: 10.1073/pnas.1207889109. Epub 2012 Oct 15.


DSG3 as a biomarker for the ultrasensitive detection of occult lymph node metastasis in oral cancer using nanostructured immunoarrays.

Patel V, Martin D, Malhotra R, Marsh CA, Doçi CL, Veenstra TD, Nathan CA, Sinha UK, Singh B, Molinolo AA, Rusling JF, Gutkind JS.

Oral Oncol. 2013 Feb;49(2):93-101. doi: 10.1016/j.oraloncology.2012.08.001. Epub 2012 Sep 23.


Ectopic ATP synthase facilitates transfer of HIV-1 from antigen-presenting cells to CD4(+) target cells.

Yavlovich A, Viard M, Zhou M, Veenstra TD, Wang JM, Gong W, Heldman E, Blumenthal R, Raviv Y.

Blood. 2012 Aug 9;120(6):1246-53. doi: 10.1182/blood-2011-12-399063. Epub 2012 Jul 2.


Stress-induced phosphorylation and proteasomal degradation of mitofusin 2 facilitates mitochondrial fragmentation and apoptosis.

Leboucher GP, Tsai YC, Yang M, Shaw KC, Zhou M, Veenstra TD, Glickman MH, Weissman AM.

Mol Cell. 2012 Aug 24;47(4):547-57. doi: 10.1016/j.molcel.2012.05.041. Epub 2012 Jun 28.


Estrogen metabolism and mammographic density in postmenopausal women: a cross-sectional study.

Fuhrman BJ, Brinton LA, Pfeiffer RM, Xu X, Veenstra TD, Teter BE, Byrne C, Dallal CM, Barba M, Muti PC, Gierach GL.

Cancer Epidemiol Biomarkers Prev. 2012 Sep;21(9):1582-91. doi: 10.1158/1055-9965.EPI-12-0247. Epub 2012 Jun 26. Erratum in: Cancer Epidemiol Biomarkers Prev. 2014 Jan;23(1):219.


Manganese superoxide dismutase regulates a metabolic switch during the mammalian cell cycle.

Sarsour EH, Kalen AL, Xiao Z, Veenstra TD, Chaudhuri L, Venkataraman S, Reigan P, Buettner GR, Goswami PC.

Cancer Res. 2012 Aug 1;72(15):3807-16. doi: 10.1158/0008-5472.CAN-11-1063. Epub 2012 Jun 18.


Post-digestion ¹⁸O exchange/labeling for quantitative shotgun proteomics of membrane proteins.

Ye X, Luke BT, Johann DJ Jr, Chan KC, Prieto DA, Ono A, Veenstra TD, Blonder J.

Methods Mol Biol. 2012;893:223-40. doi: 10.1007/978-1-61779-885-6_15.


Proteomic analysis of covalent modifications of tubulins by isothiocyanates.

Xiao Z, Mi L, Chung FL, Veenstra TD.

J Nutr. 2012 Jul;142(7):1377S-81S. doi: 10.3945/jn.111.152041. Epub 2012 May 30.


Identification of a novel Wnt5a-CK1ɛ-Dvl2-Plk1-mediated primary cilia disassembly pathway.

Lee KH, Johmura Y, Yu LR, Park JE, Gao Y, Bang JK, Zhou M, Veenstra TD, Yeon Kim B, Lee KS.

EMBO J. 2012 May 18;31(14):3104-17. doi: 10.1038/emboj.2012.144.


The ezrin metastatic phenotype is associated with the initiation of protein translation.

Briggs JW, Ren L, Nguyen R, Chakrabarti K, Cassavaugh J, Rahim S, Bulut G, Zhou M, Veenstra TD, Chen Q, Wei JS, Khan J, Uren A, Khanna C.

Neoplasia. 2012 Apr;14(4):297-310.


Metabolomics: the final frontier?

Veenstra TD.

Genome Med. 2012 Apr 30;4(4):40. No abstract available.


Profiling the erythrocyte membrane proteome isolated from patients diagnosed with chronic obstructive pulmonary disease.

Alexandre BM, Charro N, Blonder J, Lopes C, Azevedo P, Bugalho de Almeida A, Chan KC, Prieto DA, Issaq H, Veenstra TD, Penque D.

J Proteomics. 2012 Dec 5;76 Spec No.:259-69. doi: 10.1016/j.jprot.2012.04.008. Epub 2012 Apr 17.


A humanized pattern of aromatase expression is associated with mammary hyperplasia in mice.

Zhao H, Pearson EK, Brooks DC, Coon JS 5th, Chen D, Demura M, Zhang M, Clevenger CV, Xu X, Veenstra TD, Chatterton RT, DeMayo FJ, Bulun SE.

Endocrinology. 2012 Jun;153(6):2701-13. doi: 10.1210/en.2011-1761. Epub 2012 Apr 16.


Comparison of estrone and 17β-estradiol levels in commercial goat and cow milk.

Farlow DW, Xu X, Veenstra TD.

J Dairy Sci. 2012 Apr;95(4):1699-708. doi: 10.3168/jds.2011-5072. Erratum in: J Dairy Sci. 2012 Aug;95(8):4732.

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