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Items: 50


Deciphering Sex-Specific Genetic Architectures Using Local Bayesian Regressions.

Funkhouser SA, Vazquez AI, Steibel JP, Ernst CW, de Los Campos G.

Genetics. 2020 Mar 20. pii: genetics.303120.2020. doi: 10.1534/genetics.120.303120. [Epub ahead of print]


Breast cancer survival and the expression of genes related to alcohol drinking.

Cheng HG, Gonzalez-Reymundez A, Li I, Pathak A, Pathak DR, de Los Campos G, Vazquez AI.

PLoS One. 2020 Feb 20;15(2):e0228957. doi: 10.1371/journal.pone.0228957. eCollection 2020.


Cysteine catabolism and the serine biosynthesis pathway support pyruvate production during pyruvate kinase knockdown in pancreatic cancer cells.

Yu L, Teoh ST, Ensink E, Ogrodzinski MP, Yang C, Vazquez AI, Lunt SY.

Cancer Metab. 2019 Dec 30;7:13. doi: 10.1186/s40170-019-0205-z. eCollection 2019.


Gain of function in somatic TP53 mutations is associated with immune-rich breast tumors and changes in tumor-associated macrophages.

Behring M, Vazquez AI, Cui X, Irvin MR, Ojesina AI, Agarwal S, Manne U, Shrestha S.

Mol Genet Genomic Med. 2019 Dec;7(12):e1001. doi: 10.1002/mgg3.1001. Epub 2019 Oct 22.


Modeling Heterogeneity in the Genetic Architecture of Ethnically Diverse Groups Using Random Effect Interaction Models.

Veturi Y, de Los Campos G, Yi N, Huang W, Vazquez AI, Kühnel B.

Genetics. 2019 Apr;211(4):1395-1407. doi: 10.1534/genetics.119.301909. Epub 2019 Feb 22.


The influence of 15-week exercise training on dietary patterns among young adults.

Joo J, Williamson SA, Vazquez AI, Fernandez JR, Bray MS.

Int J Obes (Lond). 2019 Sep;43(9):1681-1690. doi: 10.1038/s41366-018-0299-3. Epub 2019 Jan 18.


Integrated landscape of copy number variation and RNA expression associated with nodal metastasis in invasive ductal breast carcinoma.

Behring M, Shrestha S, Manne U, Cui X, Gonzalez-Reymundez A, Grueneberg A, Vazquez AI.

Oncotarget. 2018 Dec 7;9(96):36836-36848. doi: 10.18632/oncotarget.26386. eCollection 2018 Dec 7.


A landscape of the heritability of Fourier-transform infrared spectral wavelengths of milk samples by parity and lactation stage in Holstein cows.

Rovere G, de Los Campos G, Tempelman RJ, Vazquez AI, Miglior F, Schenkel F, Cecchinato A, Bittante G, Toledo-Alvarado H, Fleming A.

J Dairy Sci. 2019 Feb;102(2):1354-1363. doi: 10.3168/jds.2018-15109. Epub 2018 Dec 20.


Advanced Dietary Patterns Analysis Using Sparse Latent Factor Models in Young Adults.

Joo J, Williamson SA, Vazquez AI, Fernandez JR, Bray MS.

J Nutr. 2018 Dec 1;148(12):1984-1992. doi: 10.1093/jn/nxy188.


Whole-Genome Multi-omic Study of Survival in Patients with Glioblastoma Multiforme.

Bernal Rubio YL, González-Reymúndez A, Wu KH, Griguer CE, Steibel JP, de Los Campos G, Doseff A, Gallo K, Vazquez AI.

G3 (Bethesda). 2018 Nov 6;8(11):3627-3636. doi: 10.1534/g3.118.200391.


Accurate Genomic Prediction of Human Height.

Lello L, Avery SG, Tellier L, Vazquez AI, de Los Campos G, Hsu SDH.

Genetics. 2018 Oct;210(2):477-497. doi: 10.1534/genetics.118.301267. Epub 2018 Aug 27. Erratum in: Genetics. 2020 Jan;214(1):231.


Complex-Trait Prediction in the Era of Big Data.

de Los Campos G, Vazquez AI, Hsu S, Lello L.

Trends Genet. 2018 Oct;34(10):746-754. doi: 10.1016/j.tig.2018.07.004. Epub 2018 Aug 20. Review.


Changes in milk characteristics and fatty acid profile during the estrous cycle in dairy cows.

Toledo-Alvarado H, Vazquez AI, de Los Campos G, Tempelman RJ, Gabai G, Cecchinato A, Bittante G.

J Dairy Sci. 2018 Oct;101(10):9135-9153. doi: 10.3168/jds.2018-14480. Epub 2018 Jul 25.


Untangling the complex relationships between incident gout risk, serum urate, and its comorbidities.

Sun M, Vazquez AI, Reynolds RJ, Singh JA, Reeves M, Merriman TR, Gaffo AL, Los Campos G.

Arthritis Res Ther. 2018 May 3;20(1):90. doi: 10.1186/s13075-018-1558-3.


Diagnosing pregnancy status using infrared spectra and milk composition in dairy cows.

Toledo-Alvarado H, Vazquez AI, de Los Campos G, Tempelman RJ, Bittante G, Cecchinato A.

J Dairy Sci. 2018 Mar;101(3):2496-2505. doi: 10.3168/jds.2017-13647. Epub 2017 Dec 28.


Will Big Data Close the Missing Heritability Gap?

Kim H, Grueneberg A, Vazquez AI, Hsu S, de Los Campos G.

Genetics. 2017 Nov;207(3):1135-1145. doi: 10.1534/genetics.117.300271. Epub 2017 Sep 11.


Obesity, adipokines, and C-peptide are associated with distinct plasma phospholipid profiles in adult males, an untargeted lipidomic approach.

Pickens CA, Vazquez AI, Jones AD, Fenton JI.

Sci Rep. 2017 Jul 24;7(1):6335. doi: 10.1038/s41598-017-05785-0.


Prediction of years of life after diagnosis of breast cancer using omics and omic-by-treatment interactions.

González-Reymúndez A, de Los Campos G, Gutiérrez L, Lunt SY, Vazquez AI.

Eur J Hum Genet. 2017 May;25(5):538-544. doi: 10.1038/ejhg.2017.12. Epub 2017 Mar 8.


Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides.

Fahrenkrog AM, Neves LG, Resende MF Jr, Vazquez AI, de Los Campos G, Dervinis C, Sykes R, Davis M, Davenport R, Barbazuk WB, Kirst M.

New Phytol. 2017 Jan;213(2):799-811. doi: 10.1111/nph.14154. Epub 2016 Sep 6.


Increased Proportion of Variance Explained and Prediction Accuracy of Survival of Breast Cancer Patients with Use of Whole-Genome Multiomic Profiles.

Vazquez AI, Veturi Y, Behring M, Shrestha S, Kirst M, Resende MF Jr, de Los Campos G.

Genetics. 2016 Jul;203(3):1425-38. doi: 10.1534/genetics.115.185181. Epub 2016 Apr 29.


Incorporating Genetic Heterogeneity in Whole-Genome Regressions Using Interactions.

de Los Campos G, Veturi Y, Vazquez AI, Lehermeier C, Pérez-Rodríguez P.

J Agric Biol Environ Stat. 2015;20(4):467-490. Epub 2015 Nov 9.


Serum urate gene associations with incident gout, measured in the Framingham Heart Study, are modified by renal disease and not by body mass index.

Reynolds RJ, Vazquez AI, Srinivasasainagendra V, Klimentidis YC, Bridges SL Jr, Allison DB, Singh JA.

Rheumatol Int. 2016 Feb;36(2):263-70. doi: 10.1007/s00296-015-3364-4. Epub 2015 Oct 1.


Bayesian regression models outperform partial least squares methods for predicting milk components and technological properties using infrared spectral data.

Ferragina A, de los Campos G, Vazquez AI, Cecchinato A, Bittante G.

J Dairy Sci. 2015 Nov;98(11):8133-51. doi: 10.3168/jds.2014-9143. Epub 2015 Sep 18.


Assessment of whole-genome regression for type II diabetes.

Vazquez AI, Klimentidis YC, Dhurandhar EJ, Veturi YC, Paérez-Rodríguez P.

PLoS One. 2015 Apr 17;10(4):e0123818. doi: 10.1371/journal.pone.0123818. eCollection 2015.


Integrated genomic and BMI analysis for type 2 diabetes risk assessment.

Lebrón-Aldea D, Dhurandhar EJ, Pérez-Rodríguez P, Klimentidis YC, Tiwari HK, Vazquez AI.

Front Genet. 2015 Mar 17;6:75. doi: 10.3389/fgene.2015.00075. eCollection 2015.


Estimating proportions of explained variance: a comparison of whole genome subsets.

Aslibekyan S, Wiener HW, Wu G, Zhi D, Shrestha S, de Los Campos G, Vazquez AI.

BMC Proc. 2014 Jun 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S102. doi: 10.1186/1753-6561-8-S1-S102. eCollection 2014.


Even modest prediction accuracy of genomic models can have large clinical utility.

Dhurandhar EJ, Vazquez AI, Argyropoulos GA, Allison DB.

Front Genet. 2014 Nov 28;5:417. doi: 10.3389/fgene.2014.00417. eCollection 2014.


Pharmacogenetic effects of 'candidate gene complexes' on stroke in the GenHAT study.

Sørensen IF, Vazquez AI, Irvin MR, Sørensen P, Davis BR, Ford CE, Boerwinkle E, Eckfeldt JH, Arnett DK.

Pharmacogenet Genomics. 2014 Nov;24(11):556-63. doi: 10.1097/FPC.0000000000000088.


High-density genotyping of immune loci in Kawasaki disease and IVIG treatment response in European-American case-parent trio study.

Shendre A, Wiener HW, Zhi D, Vazquez AI, Portman MA, Shrestha S.

Genes Immun. 2014 Dec;15(8):534-42. doi: 10.1038/gene.2014.47. Epub 2014 Aug 7.


Multiple metabolic genetic risk scores and type 2 diabetes risk in three racial/ethnic groups.

Klimentidis YC, Wineinger NE, Vazquez AI, de Los Campos G.

J Clin Endocrinol Metab. 2014 Sep;99(9):E1814-8. doi: 10.1210/jc.2014-1818. Epub 2014 Jun 6.


Obesity is associated with higher 4E-BP1 expression in endometrial cancer.

Libby EF, Azrad M, Novak L, Vazquez AI, Wilson TR, Demark-Wahnefried W.

Curr Biomark Find. 2014 Jan 15;2014(4):1-7.


RYR3 gene variants in subclinical atherosclerosis among HIV-infected women in the Women's Interagency HIV Study (WIHS).

Shendre A, Irvin MR, Aouizerat BE, Wiener HW, Vazquez AI, Anastos K, Lazar J, Liu C, Karim R, Limdi NA, Cohen MH, Golub ET, Zhi D, Kaplan RC, Shrestha S.

Atherosclerosis. 2014 Apr;233(2):666-72. doi: 10.1016/j.atherosclerosis.2014.01.035. Epub 2014 Jan 30.


Propagation of obesity across generations: the roles of differential realized fertility and assortative mating by body mass index.

Dawson JA, Dhurandhar EJ, Vazquez AI, Peng B, Allison DB.

Hum Hered. 2013;75(2-4):204-12. doi: 10.1159/000352007. Epub 2013 Sep 27.


Heritability of pulmonary function estimated from pedigree and whole-genome markers.

Klimentidis YC, Vazquez AI, de Los Campos G, Allison DB, Dransfield MT, Thannickal VJ.

Front Genet. 2013 Sep 9;4:174. doi: 10.3389/fgene.2013.00174. eCollection 2013.


Prediction of complex human traits using the genomic best linear unbiased predictor.

de Los Campos G, Vazquez AI, Fernando R, Klimentidis YC, Sorensen D.

PLoS Genet. 2013;9(7):e1003608. doi: 10.1371/journal.pgen.1003608. Epub 2013 Jul 11.


Genome-enabled prediction using the BLR (Bayesian Linear Regression) R-package.

de Los Campos G, Pérez P, Vazquez AI, Crossa J.

Methods Mol Biol. 2013;1019:299-320. doi: 10.1007/978-1-62703-447-0_12. Review.


A comprehensive genetic approach for improving prediction of skin cancer risk in humans.

Vazquez AI, de los Campos G, Klimentidis YC, Rosa GJ, Gianola D, Yi N, Allison DB.

Genetics. 2012 Dec;192(4):1493-502. doi: 10.1534/genetics.112.141705. Epub 2012 Oct 10.


Prediction of expected years of life using whole-genome markers.

de los Campos G, Klimentidis YC, Vazquez AI, Allison DB.

PLoS One. 2012;7(7):e40964. doi: 10.1371/journal.pone.0040964. Epub 2012 Jul 25.


Accuracy of Genome-Enabled Prediction in a Dairy Cattle Population using Different Cross-Validation Layouts.

Pérez-Cabal MA, Vazquez AI, Gianola D, Rosa GJ, Weigel KA.

Front Genet. 2012 Feb 28;3:27. doi: 10.3389/fgene.2012.00027. eCollection 2012.


Predictive ability of alternative models for genetic analysis of clinical mastitis.

Vazquez AI, Perez-Cabal MA, Heringstad B, Rodrigues-Motta M, Rosa GJ, Gianola D, Weigel KA.

J Anim Breed Genet. 2012 Apr;129(2):120-8. doi: 10.1111/j.1439-0388.2011.00950.x. Epub 2011 Sep 27.


Beyond missing heritability: prediction of complex traits.

Makowsky R, Pajewski NM, Klimentidis YC, Vazquez AI, Duarte CW, Allison DB, de los Campos G.

PLoS Genet. 2011 Apr;7(4):e1002051. doi: 10.1371/journal.pgen.1002051. Epub 2011 Apr 28.


Edible Lepidoptera in Mexico: Geographic distribution, ethnicity, economic and nutritional importance for rural people.

Ramos-Elorduy J, Moreno JM, Vázquez AI, Landero I, Oliva-Rivera H, Camacho VH.

J Ethnobiol Ethnomed. 2011 Jan 6;7:2. doi: 10.1186/1746-4269-7-2.


Predictive ability of subsets of single nucleotide polymorphisms with and without parent average in US Holsteins.

Vazquez AI, Rosa GJ, Weigel KA, de los Campos G, Gianola D, Allison DB.

J Dairy Sci. 2010 Dec;93(12):5942-9. doi: 10.3168/jds.2010-3335. Erratum in: J Dairy Sci. 2011 Jan;94(1):537.


Accuracy of direct genomic values derived from imputed single nucleotide polymorphism genotypes in Jersey cattle.

Weigel KA, de Los Campos G, Vazquez AI, Rosa GJ, Gianola D, Van Tassell CP.

J Dairy Sci. 2010 Nov;93(11):5423-35. doi: 10.3168/jds.2010-3149.


Integrating biological information into the statistical analysis and design of microarray experiments.

Rosa GJ, Vazquez AI.

Animal. 2010 Feb;4(2):165-72. doi: 10.1017/S1751731109991054.


Technical note: an R package for fitting generalized linear mixed models in animal breeding.

Vazquez AI, Bates DM, Rosa GJ, Gianola D, Weigel KA.

J Anim Sci. 2010 Feb;88(2):497-504. doi: 10.2527/jas.2009-1952. Epub 2009 Oct 9.


Poisson versus threshold models for genetic analysis of clinical mastitis in US Holsteins.

Vazquez AI, Weigel KA, Gianola D, Bates DM, Perez-Cabal MA, Rosa GJ, Chang YM.

J Dairy Sci. 2009 Oct;92(10):5239-47. doi: 10.3168/jds.2009-2085.


Genetic evaluation of susceptibility to clinical mastitis in Spanish Holstein cows.

Pérez-Cabal MA, de los Campos G, Vazquez AI, Gianola D, Rosa GJ, Weigel KA, Alenda R.

J Dairy Sci. 2009 Jul;92(7):3472-80. doi: 10.3168/jds.2008-1978.


Effect of suckling restriction with nose plates and premature weaning on postpartum anestrous interval in primiparous cows under range conditions.

Quintans G, Vázquez AI, Weigel KA.

Anim Reprod Sci. 2009 Nov;116(1-2):10-8. doi: 10.1016/j.anireprosci.2008.12.007. Epub 2008 Dec 14.


Assessment of Poisson, logit, and linear models for genetic analysis of clinical mastitis in Norwegian Red cows.

Vazquez AI, Gianola D, Bates D, Weigel KA, Heringstad B.

J Dairy Sci. 2009 Feb;92(2):739-48. doi: 10.3168/jds.2008-1325.

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