Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 78

1.

Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding.

Tragin M, Vaulot D.

Sci Rep. 2019 Mar 26;9(1):5190. doi: 10.1038/s41598-019-41680-6.

2.

High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding.

Gutierrez-Rodriguez A, Stukel MR, Lopes Dos Santos A, Biard T, Scharek R, Vaulot D, Landry MR, Not F.

ISME J. 2019 Apr;13(4):964-976. doi: 10.1038/s41396-018-0322-7. Epub 2018 Dec 11.

PMID:
30538274
3.

Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations.

Lambert S, Tragin M, Lozano JC, Ghiglione JF, Vaulot D, Bouget FY, Galand PE.

ISME J. 2019 Feb;13(2):388-401. doi: 10.1038/s41396-018-0281-z. Epub 2018 Sep 25.

PMID:
30254323
4.

Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset.

Tragin M, Vaulot D.

Sci Rep. 2018 Sep 19;8(1):14020. doi: 10.1038/s41598-018-32338-w.

5.

A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle.

Partensky F, Six C, Ratin M, Garczarek L, Vaulot D, Probert I, Calteau A, Gourvil P, Marie D, Grébert T, Bouchier C, Le Panse S, Gachenot M, Rodríguez F, Garrido JL.

Sci Rep. 2018 Jun 14;8(1):9142. doi: 10.1038/s41598-018-27542-7.

6.

dinoref: A curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene.

Mordret S, Piredda R, Vaulot D, Montresor M, Kooistra WHCF, Sarno D.

Mol Ecol Resour. 2018 Mar 30. doi: 10.1111/1755-0998.12781. [Epub ahead of print]

PMID:
29603631
7.

Small eukaryotic phytoplankton communities in tropical waters off Brazil are dominated by symbioses between Haptophyta and nitrogen-fixing cyanobacteria.

Gérikas Ribeiro C, Lopes Dos Santos A, Marie D, Pereira Brandini F, Vaulot D.

ISME J. 2018 May;12(5):1360-1374. doi: 10.1038/s41396-018-0050-z. Epub 2018 Feb 9.

8.

Chloropicophyceae, a new class of picophytoplanktonic prasinophytes.

Lopes Dos Santos A, Pollina T, Gourvil P, Corre E, Marie D, Garrido JL, Rodríguez F, Noël MH, Vaulot D, Eikrem W.

Sci Rep. 2017 Oct 25;7(1):14019. doi: 10.1038/s41598-017-12412-5.

9.

Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured Isolates.

Simon N, Foulon E, Grulois D, Six C, Desdevises Y, Latimier M, Le Gall F, Tragin M, Houdan A, Derelle E, Jouenne F, Marie D, Le Panse S, Vaulot D, Marin B.

Protist. 2017 Nov;168(5):612-635. doi: 10.1016/j.protis.2017.09.002. Epub 2017 Sep 14.

PMID:
29028580
10.

Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta.

Tragin M, Zingone A, Vaulot D.

Environ Microbiol. 2018 Feb;20(2):506-520. doi: 10.1111/1462-2920.13952. Epub 2017 Nov 3.

PMID:
28984410
11.

Survey of the green picoalga Bathycoccus genomes in the global ocean.

Vannier T, Leconte J, Seeleuthner Y, Mondy S, Pelletier E, Aury JM, de Vargas C, Sieracki M, Iudicone D, Vaulot D, Wincker P, Jaillon O.

Sci Rep. 2016 Nov 30;6:37900. doi: 10.1038/srep37900.

12.

Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry.

Marie D, Le Gall F, Edern R, Gourvil P, Vaulot D.

J Phycol. 2017 Apr;53(2):271-282. doi: 10.1111/jpy.12495. Epub 2017 Feb 16.

PMID:
27878810
13.

Pico and nanoplankton abundance and carbon stocks along the Brazilian Bight.

Gérikas Ribeiro C, Lopes Dos Santos A, Marie D, Helena Pellizari V, Pereira Brandini F, Vaulot D.

PeerJ. 2016 Nov 10;4:e2587. eCollection 2016.

14.

Morphological and genetic diversity of Beaufort Sea diatoms with high contributions from the Chaetoceros neogracilis species complex.

Balzano S, Percopo I, Siano R, Gourvil P, Chanoine M, Marie D, Vaulot D, Sarno D.

J Phycol. 2017 Feb;53(1):161-187. doi: 10.1111/jpy.12489. Epub 2016 Dec 5.

PMID:
27809344
15.

Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters.

Lopes Dos Santos A, Gourvil P, Tragin M, Noël MH, Decelle J, Romac S, Vaulot D.

ISME J. 2017 Feb;11(2):512-528. doi: 10.1038/ismej.2016.120. Epub 2016 Oct 25.

16.

Benthic protists: the under-charted majority.

Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra WH, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C, Stoeck T.

FEMS Microbiol Ecol. 2016 Aug;92(8). pii: fiw120. doi: 10.1093/femsec/fiw120. Epub 2016 Jun 5.

PMID:
27267932
17.

Pseudo-nitzschia arctica sp. nov., a new cold-water cryptic Pseudo-nitzschia species within the P. pseudodelicatissima complex.

Percopo I, Ruggiero MV, Balzano S, Gourvil P, Lundholm N, Siano R, Tammilehto A, Vaulot D, Sarno D.

J Phycol. 2016 Apr;52(2):184-99. doi: 10.1111/jpy.12395. Epub 2016 Mar 8.

PMID:
27037584
18.

Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms.

Ichinomiya M, Dos Santos AL, Gourvil P, Yoshikawa S, Kamiya M, Ohki K, Audic S, de Vargas C, Noël MH, Vaulot D, Kuwata A.

ISME J. 2016 Oct;10(10):2419-34. doi: 10.1038/ismej.2016.38. Epub 2016 Mar 22.

19.

Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade VII.

Lopes Dos Santos A, Gourvil P, Rodríguez F, Garrido JL, Vaulot D.

J Phycol. 2016 Feb;52(1):148-55. doi: 10.1111/jpy.12376. Epub 2016 Jan 19.

PMID:
26987097
20.

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, Guillou L, Jaillon O, Kooistra WH, Logares R, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Probert I, Romac S, Richards T, Santini S, Shalchian-Tabrizi K, Siano R, Simon N, Stoeck T, Vaulot D, Zingone A, de Vargas C.

Environ Microbiol. 2015 Oct;17(10):4035-49. doi: 10.1111/1462-2920.12955. Epub 2015 Aug 4.

PMID:
26119494
21.

The ocean sampling day consortium.

Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah RZ, Sonnenschein EC, Cariou T, O'Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Caçador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro CM, Luna GM, Quero GM, Löscher CR, Kremp A, DeLorenzo ME, Øvreås L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer CP, Ramos S, Magalhães C, Jude-Lemeilleur F, Aguirre-Macedo ML, Wang S, Poulton N, Jones S, Collin R, Fuhrman JA, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov MM, Baltar F, Bodrossy L, Van De Kamp J, Frampton DM, Ostrowski M, Van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder DC, Kandil MM, Amaral V, Biancalana F, Santana R, Pedrotti ML, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid el H, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, El Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, Ten Hoopen P, Cochrane G, L'Haridon S, Bizsel KC, Vezzi A, Lauro FM, Martin P, Jensen RM, Hinks J, Gebbels S, Rosselli R, De Pascale F, Schiavon R, Dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira JA, Barbier M, Turk V, Tinta T, Fuller WJ, Salihoglu I, Serakinci N, Ergoren MC, Bresnan E, Iriberri J, Nyhus PA, Bente E, Karlsen HE, Golyshin PN, Gasol JM, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano CD, Gidley ML, Zingone A, Danovaro R, Tsiamis G, Clark MS, Costa AC, El Bour M, Martins AM, Collins RE, Ducluzeau AL, Martinez J, Costello MJ, Amaral-Zettler LA, Gilbert JA, Davies N, Field D, Glöckner FO.

Gigascience. 2015 Jun 19;4:27. doi: 10.1186/s13742-015-0066-5. eCollection 2015.

22.

PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy.

Decelle J, Romac S, Stern RF, Bendif el M, Zingone A, Audic S, Guiry MD, Guillou L, Tessier D, Le Gall F, Gourvil P, Dos Santos AL, Probert I, Vaulot D, de Vargas C, Christen R.

Mol Ecol Resour. 2015 Nov;15(6):1435-45. doi: 10.1111/1755-0998.12401. Epub 2015 Apr 6.

PMID:
25740460
23.

Metagenome sequencing of the microbial community of a solar saltern crystallizer pond at cáhuil lagoon, chile.

Plominsky AM, Delherbe N, Ugalde JA, Allen EE, Blanchet M, Ikeda P, Santibañez F, Hanselmann K, Ulloa O, De la Iglesia R, von Dassow P, Astorga M, Gálvez MJ, González ML, Henríquez-Castillo C, Vaulot D, Lopes do Santos A, van den Engh G, Gimpel C, Bertoglio F, Delgado Y, Docmac F, Elizondo-Patrone C, Narváez S, Sorroche F, Rojas-Herrera M, Trefault N.

Genome Announc. 2014 Nov 13;2(6). pii: e01172-14. doi: 10.1128/genomeA.01172-14.

24.

An improved protocol for flow cytometry analysis of phytoplankton cultures and natural samples.

Marie D, Rigaut-Jalabert F, Vaulot D.

Cytometry A. 2014 Nov;85(11):962-8. doi: 10.1002/cyto.a.22517. Epub 2014 Aug 25.

25.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

26.

Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses.

Roux S, Enault F, Bronner G, Vaulot D, Forterre P, Krupovic M.

Nat Commun. 2013;4:2700. doi: 10.1038/ncomms3700.

PMID:
24193254
27.

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy.

Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, Del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, Kooistra WH, Lara E, Le Bescot N, Logares R, Mahé F, Massana R, Montresor M, Morard R, Not F, Pawlowski J, Probert I, Sauvadet AL, Siano R, Stoeck T, Vaulot D, Zimmermann P, Christen R.

Nucleic Acids Res. 2013 Jan;41(Database issue):D597-604. doi: 10.1093/nar/gks1160. Epub 2012 Nov 27.

28.

Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga.

Thompson AW, Foster RA, Krupke A, Carter BJ, Musat N, Vaulot D, Kuypers MM, Zehr JP.

Science. 2012 Sep 21;337(6101):1546-50.

29.

Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate barcode marker.

Stern RF, Andersen RA, Jameson I, Küpper FC, Coffroth MA, Vaulot D, Le Gall F, Véron B, Brand JJ, Skelton H, Kasai F, Lilly EL, Keeling PJ.

PLoS One. 2012;7(8):e42780. doi: 10.1371/journal.pone.0042780. Epub 2012 Aug 16.

30.

Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling.

Vaulot D, Lepère C, Toulza E, De la Iglesia R, Poulain J, Gaboyer F, Moreau H, Vandepoele K, Ulloa O, Gavory F, Piganeau G.

PLoS One. 2012;7(6):e39648. doi: 10.1371/journal.pone.0039648. Epub 2012 Jun 22.

31.
32.

Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean.

Shi XL, Lepère C, Scanlan DJ, Vaulot D.

PLoS One. 2011 Apr 28;6(4):e18979. doi: 10.1371/journal.pone.0018979.

33.

Lotharella reticulosa sp. nov.: a highly reticulated network forming chlorarachniophyte from the Mediterranean Sea.

Ota S, Vaulot D.

Protist. 2012 Jan;163(1):91-104. doi: 10.1016/j.protis.2011.02.004. Epub 2011 Apr 15.

PMID:
21497132
34.

Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations.

Lepere C, Demura M, Kawachi M, Romac S, Probert I, Vaulot D.

FEMS Microbiol Ecol. 2011 Jun;76(3):513-23. doi: 10.1111/j.1574-6941.2011.01072.x. Epub 2011 Mar 16.

35.

Prasinoderma singularis sp. nov. (Prasinophyceae, Chlorophyta), a solitary coccoid Prasinophyte from the South-East Pacific Ocean.

Jouenne F, Eikrem W, Le Gall F, Marie D, Johnsen G, Vaulot D.

Protist. 2011 Jan;162(1):70-84. doi: 10.1016/j.protis.2010.04.005. Epub 2010 Jul 31.

PMID:
20674490
36.

Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts.

Man-Aharonovich D, Philosof A, Kirkup BC, Le Gall F, Yogev T, Berman-Frank I, Polz MF, Vaulot D, Béjà O.

ISME J. 2010 Aug;4(8):1044-52. doi: 10.1038/ismej.2010.25. Epub 2010 Mar 18.

PMID:
20237514
37.

Use of flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel.

Marie D, Shi XL, Rigaut-Jalabert F, Vaulot D.

FEMS Microbiol Ecol. 2010 May;72(2):165-78. doi: 10.1111/j.1574-6941.2010.00842.x. Epub 2010 Jan 27.

38.

Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean.

Shi XL, Marie D, Jardillier L, Scanlan DJ, Vaulot D.

PLoS One. 2009 Oct 29;4(10):e7657. doi: 10.1371/journal.pone.0007657.

39.

Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on Earth.

Lepère C, Vaulot D, Scanlan DJ.

Environ Microbiol. 2009 Dec;11(12):3105-17. doi: 10.1111/j.1462-2920.2009.02015.x. Epub 2009 Aug 5.

PMID:
19674042
40.

Partenskyella glossopodia gen. et sp. nov., the first report of a Chlorarachniophyte that lacks a pyrenoid.

Ota S, Vaulot D, Le Gall F, Yabuki A, Ishida K.

Protist. 2009 Feb;160(1):137-50. doi: 10.1016/j.protis.2008.09.003. Epub 2008 Nov 13.

PMID:
19013103
41.

DNA/RNA analysis of phytoplankton by flow cytometry.

Marie D, Simon N, Guillou L, Partensky F, Vaulot D.

Curr Protoc Cytom. 2001 May;Chapter 11:Unit 11.12. doi: 10.1002/0471142956.cy1112s11.

PMID:
18770686
42.

Enumeration of phytoplankton, bacteria, and viruses in marine samples.

Marie D, Partensky F, Vaulot D, Brussaard C.

Curr Protoc Cytom. 2001 May;Chapter 11:Unit 11.11. doi: 10.1002/0471142956.cy1111s10.

PMID:
18770685
43.

The diversity of small eukaryotic phytoplankton (< or =3 microm) in marine ecosystems.

Vaulot D, Eikrem W, Viprey M, Moreau H.

FEMS Microbiol Rev. 2008 Aug;32(5):795-820. doi: 10.1111/j.1574-6976.2008.00121.x. Epub 2008 Jun 28. Review.

44.

Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach.

Viprey M, Guillou L, Ferréol M, Vaulot D.

Environ Microbiol. 2008 Jul;10(7):1804-22. doi: 10.1111/j.1462-2920.2008.01602.x. Epub 2008 Apr 21.

PMID:
18430015
45.

Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes.

Zwirglmaier K, Jardillier L, Ostrowski M, Mazard S, Garczarek L, Vaulot D, Not F, Massana R, Ulloa O, Scanlan DJ.

Environ Microbiol. 2008 Jan;10(1):147-61. Epub 2007 Sep 27.

PMID:
17900271
46.

Picobiliphytes: a marine picoplanktonic algal group with unknown affinities to other eukaryotes.

Not F, Valentin K, Romari K, Lovejoy C, Massana R, Töbe K, Vaulot D, Medlin LK.

Science. 2007 Jan 12;315(5809):253-5. Erratum in: Science. 2007 May 11;316(5826):832..

47.

Telonemia, a new protist phylum with affinity to chromist lineages.

Shalchian-Tabrizi K, Eikrem W, Klaveness D, Vaulot D, Minge MA, Le Gall F, Romari K, Throndsen J, Botnen A, Massana R, Thomsen HA, Jakobsen KS.

Proc Biol Sci. 2006 Jul 22;273(1595):1833-42.

48.

Eukaryotic picoplankton communities of the Mediterranean Sea in summer assessed by molecular approaches (DGGE, TTGE, QPCR).

Marie D, Zhu F, Balagué V, Ras J, Vaulot D.

FEMS Microbiol Ecol. 2006 Mar;55(3):403-15.

49.

Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene.

Zhu F, Massana R, Not F, Marie D, Vaulot D.

FEMS Microbiol Ecol. 2005 Mar 1;52(1):79-92. Epub 2004 Dec 22.

50.

Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae).

Rodríguez F, Derelle E, Guillou L, Le Gall F, Vaulot D, Moreau H.

Environ Microbiol. 2005 Jun;7(6):853-9.

PMID:
15892704

Supplemental Content

Loading ...
Support Center