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Items: 14

1.

Genomic Selection for Yield and Seed Composition Traits Within an Applied Soybean Breeding Program.

Stewart-Brown BB, Song Q, Vaughn JN, Li Z.

G3 (Bethesda). 2019 Jul 9;9(7):2253-2265. doi: 10.1534/g3.118.200917.

2.

Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.

Díaz-Tielas C, Graña E, Sánchez-Moreiras AM, Reigosa MJ, Vaughn JN, Pan Z, Bajsa-Hirschel J, Duke MV, Duke SO.

Pest Manag Sci. 2019 Sep;75(9):2490-2504. doi: 10.1002/ps.5405. Epub 2019 Apr 13.

PMID:
30868714
3.

Crossword: A data-driven simulation language for the design of genetic-mapping experiments and breeding strategies.

Korani W, Vaughn JN.

Sci Rep. 2019 Mar 13;9(1):4386. doi: 10.1038/s41598-018-38348-y.

4.

Gene loss and genome rearrangement in the plastids of five Hemiparasites in the family Orobanchaceae.

Frailey DC, Chaluvadi SR, Vaughn JN, Coatney CG, Bennetzen JL.

BMC Plant Biol. 2018 Feb 6;18(1):30. doi: 10.1186/s12870-018-1249-x.

5.
6.

Transcriptomic changes due to water deficit define a general soybean response and accession-specific pathways for drought avoidance.

Shin JH, Vaughn JN, Abdel-Haleem H, Chavarro C, Abernathy B, Kim KD, Jackson SA, Li Z.

BMC Plant Biol. 2015 Feb 3;15:26. doi: 10.1186/s12870-015-0422-8.

7.

Whole plastome sequences from five ginger species facilitate marker development and define limits to barcode methodology.

Vaughn JN, Chaluvadi SR, Tushar, Rangan L, Bennetzen JL.

PLoS One. 2014 Oct 21;9(10):e108581. doi: 10.1371/journal.pone.0108581. eCollection 2014.

8.

The genetic architecture of seed composition in soybean is refined by genome-wide association scans across multiple populations.

Vaughn JN, Nelson RL, Song Q, Cregan PB, Li Z.

G3 (Bethesda). 2014 Sep 22;4(11):2283-94. doi: 10.1534/g3.114.013433.

9.

Natural insertions in rice commonly form tandem duplications indicative of patch-mediated double-strand break induction and repair.

Vaughn JN, Bennetzen JL.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6684-9. doi: 10.1073/pnas.1321854111. Epub 2014 Apr 23.

10.

Regulation of plant translation by upstream open reading frames.

von Arnim AG, Jia Q, Vaughn JN.

Plant Sci. 2014 Jan;214:1-12. doi: 10.1016/j.plantsci.2013.09.006. Epub 2013 Sep 18. Review.

PMID:
24268158
11.

Reference genome sequence of the model plant Setaria.

Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye CY, Mauro-Herrera M, Wang L, Li P, Sharma M, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM.

Nat Biotechnol. 2012 May 13;30(6):555-61. doi: 10.1038/nbt.2196.

12.

Known and novel post-transcriptional regulatory sequences are conserved across plant families.

Vaughn JN, Ellingson SR, Mignone F, Arnim Av.

RNA. 2012 Mar;18(3):368-84. doi: 10.1261/rna.031179.111. Epub 2012 Jan 11.

13.

The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames.

Roy B, Vaughn JN, Kim BH, Zhou F, Gilchrist MA, Von Arnim AG.

RNA. 2010 Apr;16(4):748-61. doi: 10.1261/rna.2056010. Epub 2010 Feb 23.

14.

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