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Items: 22

1.

The maternal-to-zygotic transition revisited.

Vastenhouw NL, Cao WX, Lipshitz HD.

Development. 2019 Jun 12;146(11). pii: dev161471. doi: 10.1242/dev.161471. Review.

PMID:
31189646
2.

Reduced expression of the Nodal co-receptor Oep causes loss of mesendodermal competence in zebrafish.

Vopalensky P, Pralow S, Vastenhouw NL.

Development. 2018 Mar 6;145(5). pii: dev158832. doi: 10.1242/dev.158832.

3.

MS Western, a Method of Multiplexed Absolute Protein Quantification is a Practical Alternative to Western Blotting.

Kumar M, Joseph SR, Augsburg M, Bogdanova A, Drechsel D, Vastenhouw NL, Buchholz F, Gentzel M, Shevchenko A.

Mol Cell Proteomics. 2018 Feb;17(2):384-396. doi: 10.1074/mcp.O117.067082. Epub 2017 Nov 30.

4.

Detection and Automated Analysis of Single Transcripts at Subcellular Resolution in Zebrafish Embryos.

Stapel LC, Broaddus C, Vastenhouw NL.

Methods Mol Biol. 2018;1649:143-162. doi: 10.1007/978-1-4939-7213-5_9.

PMID:
29130195
5.

Uniform gene expression in embryos is achieved by temporal averaging of transcription noise.

Stapel LC, Zechner C, Vastenhouw NL.

Genes Dev. 2017 Aug 15;31(16):1635-1640. doi: 10.1101/gad.302935.117. Epub 2017 Sep 13.

6.

A tunable refractive index matching medium for live imaging cells, tissues and model organisms.

Boothe T, Hilbert L, Heide M, Berninger L, Huttner WB, Zaburdaev V, Vastenhouw NL, Myers EW, Drechsel DN, Rink JC.

Elife. 2017 Jul 14;6. pii: e27240. doi: 10.7554/eLife.27240.

7.

Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos.

Joseph SR, Pálfy M, Hilbert L, Kumar M, Karschau J, Zaburdaev V, Shevchenko A, Vastenhouw NL.

Elife. 2017 Apr 20;6. pii: e23326. doi: 10.7554/eLife.23326.

8.

The timing of zygotic genome activation.

Pálfy M, Joseph SR, Vastenhouw NL.

Curr Opin Genet Dev. 2017 Apr;43:53-60. doi: 10.1016/j.gde.2016.12.001. Epub 2017 Jan 12. Review.

PMID:
28088031
9.

Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos.

Stapel LC, Lombardot B, Broaddus C, Kainmueller D, Jug F, Myers EW, Vastenhouw NL.

Development. 2016 Feb 1;143(3):540-6. doi: 10.1242/dev.128918. Epub 2015 Dec 23.

10.

Canonical nucleosome organization at promoters forms during genome activation.

Zhang Y, Vastenhouw NL, Feng J, Fu K, Wang C, Ge Y, Pauli A, van Hummelen P, Schier AF, Liu XS.

Genome Res. 2014 Feb;24(2):260-6. doi: 10.1101/gr.157750.113. Epub 2013 Nov 27.

11.

Message control in developmental transitions; deciphering chromatin's role using zebrafish genomics.

Stapel LC, Vastenhouw NL.

Brief Funct Genomics. 2014 Mar;13(2):106-20. doi: 10.1093/bfgp/elt045. Epub 2013 Oct 28. Review.

PMID:
24170706
12.

Bivalent histone modifications in early embryogenesis.

Vastenhouw NL, Schier AF.

Curr Opin Cell Biol. 2012 Jun;24(3):374-86. doi: 10.1016/j.ceb.2012.03.009. Epub 2012 Apr 17. Review.

13.

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF.

Genome Res. 2012 Mar;22(3):577-91. doi: 10.1101/gr.133009.111. Epub 2011 Nov 22.

14.

Chromatin signature of embryonic pluripotency is established during genome activation.

Vastenhouw NL, Zhang Y, Woods IG, Imam F, Regev A, Liu XS, Rinn J, Schier AF.

Nature. 2010 Apr 8;464(7290):922-6. doi: 10.1038/nature08866. Epub 2010 Mar 24.

15.

Gene expression: long-term gene silencing by RNAi.

Vastenhouw NL, Brunschwig K, Okihara KL, Müller F, Tijsterman M, Plasterk RH.

Nature. 2006 Aug 24;442(7105):882.

PMID:
16929289
16.

RNA interference, transposon silencing, and cosuppression in the Caenorhabditis elegans germ line: similarities and differences.

Robert VJ, Vastenhouw NL, Plasterk RH.

Cold Spring Harb Symp Quant Biol. 2004;69:397-402. Review. No abstract available.

PMID:
16117673
17.

Gene interactions in the DNA damage-response pathway identified by genome-wide RNA-interference analysis of synthetic lethality.

van Haaften G, Vastenhouw NL, Nollen EA, Plasterk RH, Tijsterman M.

Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12992-6. Epub 2004 Aug 23.

18.

RNAi protects the Caenorhabditis elegans germline against transposition.

Vastenhouw NL, Plasterk RH.

Trends Genet. 2004 Jul;20(7):314-9. Review. No abstract available. Erratum in: Trends Genet. 2005 Jan;21(1):36.

PMID:
15219396
19.

A genome-wide screen identifies 27 genes involved in transposon silencing in C. elegans.

Vastenhouw NL, Fischer SE, Robert VJ, Thijssen KL, Fraser AG, Kamath RS, Ahringer J, Plasterk RH.

Curr Biol. 2003 Aug 5;13(15):1311-6.

20.

The Mechanism of RNA Interference and the Transposon Silencing in Caenorhabditis elegans.

Tijsterman M, Ketting R, Fischer S, Simmer F, Sijen T, Okihara K, Tops B, Vastenhouw N, Plasterk R.

ScientificWorldJournal. 2002 Jan 23;2:3-4. doi: 10.1100/tsw.2002.2. eCollection 2002. No abstract available.

21.

Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription.

Berkhout B, Vastenhouw NL, Klasens BI, Huthoff H.

RNA. 2001 Aug;7(8):1097-114.

22.

B-myb rescues ras-induced premature senescence, which requires its transactivation domain.

Masselink H, Vastenhouw N, Bernards R.

Cancer Lett. 2001 Sep 28;171(1):87-101.

PMID:
11485831

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