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Items: 25

1.

Rapid and efficient in vitro excision of BAC sequences from herpesvirus genomes using Cre-mediated recombination.

Grzesik P, Ko N, Oldfield LM, Vashee S, Desai PJ.

J Virol Methods. 2018 Nov;261:67-70. doi: 10.1016/j.jviromet.2018.08.006. Epub 2018 Aug 6.

PMID:
30092252
2.

Cloning, Assembly, and Modification of the Primary Human Cytomegalovirus Isolate Toledo by Yeast-Based Transformation-Associated Recombination.

Vashee S, Stockwell TB, Alperovich N, Denisova EA, Gibson DG, Cady KC, Miller K, Kannan K, Malouli D, Crawford LB, Voorhies AA, Bruening E, Caposio P, Früh K.

mSphere. 2017 Oct 4;2(5). pii: e00331-17. doi: 10.1128/mSphereDirect.00331-17. eCollection 2017 Sep-Oct.

3.

Genome-wide engineering of an infectious clone of herpes simplex virus type 1 using synthetic genomics assembly methods.

Oldfield LM, Grzesik P, Voorhies AA, Alperovich N, MacMath D, Najera CD, Chandra DS, Prasad S, Noskov VN, Montague MG, Friedman RM, Desai PJ, Vashee S.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8885-E8894. doi: 10.1073/pnas.1700534114. Epub 2017 Sep 19.

4.

The Human Microbiome and Cancer.

Rajagopala SV, Vashee S, Oldfield LM, Suzuki Y, Venter JC, Telenti A, Nelson KE.

Cancer Prev Res (Phila). 2017 Apr;10(4):226-234. doi: 10.1158/1940-6207.CAPR-16-0249. Epub 2017 Jan 17. Review.

5.

Efficient size-independent chromosome delivery from yeast to cultured cell lines.

Brown DM, Chan YA, Desai PJ, Grzesik P, Oldfield LM, Vashee S, Way JC, Silver PA, Glass JI.

Nucleic Acids Res. 2017 Apr 20;45(7):e50. doi: 10.1093/nar/gkw1252.

6.

Impact of donor-recipient phylogenetic distance on bacterial genome transplantation.

Labroussaa F, Lebaudy A, Baby V, Gourgues G, Matteau D, Vashee S, Sirand-Pugnet P, Rodrigue S, Lartigue C.

Nucleic Acids Res. 2016 Sep 30;44(17):8501-11. doi: 10.1093/nar/gkw688. Epub 2016 Aug 3.

7.

MIB-MIP is a mycoplasma system that captures and cleaves immunoglobulin G.

Arfi Y, Minder L, Di Primo C, Le Roy A, Ebel C, Coquet L, Claverol S, Vashee S, Jores J, Blanchard A, Sirand-Pugnet P.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):5406-11. doi: 10.1073/pnas.1600546113. Epub 2016 Apr 25.

8.

Complete Genome Sequence of Mycoplasma mycoides subsp. mycoides T1/44, a Vaccine Strain against Contagious Bovine Pleuropneumonia.

Gourgues G, Barré A, Beaudoing E, Weber J, Magdelenat G, Barbe V, Schieck E, Jores J, Vashee S, Blanchard A, Lartigue C, Sirand-Pugnet P.

Genome Announc. 2016 Apr 14;4(2). pii: e00263-16. doi: 10.1128/genomeA.00263-16.

9.

In-Yeast Engineering of a Bacterial Genome Using CRISPR/Cas9.

Tsarmpopoulos I, Gourgues G, Blanchard A, Vashee S, Jores J, Lartigue C, Sirand-Pugnet P.

ACS Synth Biol. 2016 Jan 15;5(1):104-9. doi: 10.1021/acssynbio.5b00196. Epub 2015 Dec 7.

PMID:
26592087
10.

High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237.

Fischer A, Santana-Cruz I, Hegerman J, Gourlé H, Schieck E, Lambert M, Nadendla S, Wesonga H, Miller RA, Vashee S, Weber J, Meens J, Frey J, Jores J.

Stand Genomic Sci. 2015 Oct 29;10:89. doi: 10.1186/s40793-015-0067-0. eCollection 2015.

11.

Galactofuranose in Mycoplasma mycoides is important for membrane integrity and conceals adhesins but does not contribute to serum resistance.

Schieck E, Lartigue C, Frey J, Vozza N, Hegermann J, Miller RA, Valguarnera E, Muriuki C, Meens J, Nene V, Naessens J, Weber J, Lowary TL, Vashee S, Feldman MF, Jores J.

Mol Microbiol. 2016 Jan;99(1):55-70. doi: 10.1111/mmi.13213. Epub 2015 Oct 14.

12.

Bacterial genome reduction using the progressive clustering of deletions via yeast sexual cycling.

Suzuki Y, Assad-Garcia N, Kostylev M, Noskov VN, Wise KS, Karas BJ, Stam J, Montague MG, Hanly TJ, Enriquez NJ, Ramon A, Goldgof GM, Richter RA, Vashee S, Chuang RY, Winzeler EA, Hutchison CA 3rd, Gibson DG, Smith HO, Glass JI, Venter JC.

Genome Res. 2015 Mar;25(3):435-44. doi: 10.1101/gr.182477.114. Epub 2015 Feb 5.

13.

TREC-IN: gene knock-in genetic tool for genomes cloned in yeast.

Chandran S, Noskov VN, Segall-Shapiro TH, Ma L, Whiteis C, Lartigue C, Jores J, Vashee S, Chuang RY.

BMC Genomics. 2014 Dec 24;15:1180. doi: 10.1186/1471-2164-15-1180.

14.

A Type III restriction-modification system in Mycoplasma mycoides subsp. capri.

Algire MA, Montague MG, Vashee S, Lartigue C, Merryman C.

Open Biol. 2012 Oct;2(10):120115. doi: 10.1098/rsob.120115.

15.

Synthetic genomics: potential and limitations.

Montague MG, Lartigue C, Vashee S.

Curr Opin Biotechnol. 2012 Oct;23(5):659-65. doi: 10.1016/j.copbio.2012.01.014. Epub 2012 Feb 17. Review.

PMID:
22342755
16.

Creation of a bacterial cell controlled by a chemically synthesized genome.

Gibson DG, Glass JI, Lartigue C, Noskov VN, Chuang RY, Algire MA, Benders GA, Montague MG, Ma L, Moodie MM, Merryman C, Vashee S, Krishnakumar R, Assad-Garcia N, Andrews-Pfannkoch C, Denisova EA, Young L, Qi ZQ, Segall-Shapiro TH, Calvey CH, Parmar PP, Hutchison CA 3rd, Smith HO, Venter JC.

Science. 2010 Jul 2;329(5987):52-6. doi: 10.1126/science.1190719. Epub 2010 May 20.

17.

Cloning whole bacterial genomes in yeast.

Benders GA, Noskov VN, Denisova EA, Lartigue C, Gibson DG, Assad-Garcia N, Chuang RY, Carrera W, Moodie M, Algire MA, Phan Q, Alperovich N, Vashee S, Merryman C, Venter JC, Smith HO, Glass JI, Hutchison CA 3rd.

Nucleic Acids Res. 2010 May;38(8):2558-69. doi: 10.1093/nar/gkq119. Epub 2010 Mar 7.

18.

The evolution of RecD outside of the RecBCD complex.

Montague M, Barnes C, Smith HO, Chuang RY, Vashee S.

J Mol Evol. 2009 Oct;69(4):360-71. doi: 10.1007/s00239-009-9290-x. Epub 2009 Oct 20.

PMID:
19841849
19.

Creating bacterial strains from genomes that have been cloned and engineered in yeast.

Lartigue C, Vashee S, Algire MA, Chuang RY, Benders GA, Ma L, Noskov VN, Denisova EA, Gibson DG, Assad-Garcia N, Alperovich N, Thomas DW, Merryman C, Hutchison CA 3rd, Smith HO, Venter JC, Glass JI.

Science. 2009 Sep 25;325(5948):1693-6. doi: 10.1126/science.1173759. Epub 2009 Aug 20.

20.

Sequence-independent DNA binding and replication initiation by the human origin recognition complex.

Vashee S, Cvetic C, Lu W, Simancek P, Kelly TJ, Walter JC.

Genes Dev. 2003 Aug 1;17(15):1894-908.

21.

Assembly of the human origin recognition complex.

Vashee S, Simancek P, Challberg MD, Kelly TJ.

J Biol Chem. 2001 Jul 13;276(28):26666-73. Epub 2001 Apr 25.

22.

Synergistic activation of transcription by physiologically unrelated transcription factors through cooperative DNA-binding.

Vashee S, Willie J, Kodadek T.

Biochem Biophys Res Commun. 1998 Jun 18;247(2):530-5.

PMID:
9642164
23.

Evidence for two modes of cooperative DNA binding in vivo that do not involve direct protein-protein interactions.

Vashee S, Melcher K, Ding WV, Johnston SA, Kodadek T.

Curr Biol. 1998 Apr 9;8(8):452-8.

24.

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