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Items: 49

1.

Mapping of quantitative trait loci for life history traits segregating within common frog populations.

Palomar G, Vasemägi A, Ahmad F, Nicieza AG, Cano JM.

Heredity (Edinb). 2019 Jan 10. doi: 10.1038/s41437-018-0175-x. [Epub ahead of print]

PMID:
30631147
2.

Highly Continuous Genome Assembly of Eurasian Perch (Perca fluviatilis) Using Linked-Read Sequencing.

Ozerov MY, Ahmad F, Gross R, Pukk L, Kahar S, Kisand V, Vasemägi A.

G3 (Bethesda). 2018 Dec 10;8(12):3737-3743. doi: 10.1534/g3.118.200768.

3.

Comparison of Migratory and Resident Populations of Brown Trout Reveals Candidate Genes for Migration Tendency.

Lemopoulos A, Uusi-Heikkilä S, Huusko A, Vasemägi A, Vainikka A.

Genome Biol Evol. 2018 Jun 1;10(6):1493-1503. doi: 10.1093/gbe/evy102.

4.

Association mapping reveals candidate loci for resistance and anaemic response to an emerging temperature-driven parasitic disease in a wild salmonid fish.

Ahmad F, Debes PV, Palomar G, Vasemägi A.

Mol Ecol. 2018 Mar;27(6):1385-1401. doi: 10.1111/mec.14509. Epub 2018 Mar 6.

PMID:
29411465
5.

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish.

Vasemägi A, Visse M, Kisand V.

mSphere. 2017 Dec 20;2(6). pii: e00418-17. doi: 10.1128/mSphere.00418-17. eCollection 2017 Nov-Dec.

6.

Telomere length and antioxidant defense associate with parasite-induced retarded growth in wild brown trout.

Stauffer J, Bruneaux M, Panda B, Visse M, Vasemägi A, Ilmonen P.

Oecologia. 2017 Nov;185(3):365-374. doi: 10.1007/s00442-017-3953-x. Epub 2017 Sep 12.

PMID:
28900791
7.

Quantitative Genetic Variation in, and Environmental Effects on, Pathogen Resistance and Temperature-Dependent Disease Severity in a Wild Trout.

Debes PV, Gross R, Vasemägi A.

Am Nat. 2017 Aug;190(2):244-265. doi: 10.1086/692536. Epub 2017 Jun 23.

PMID:
28731797
8.

First record of proliferative kidney disease agent Tetracapsuloides bryosalmonae in wild brown trout and European grayling in Finland.

Vasemägi A, Nousiainen I, Saura A, Vähä JP, Valjus J, Huusko A.

Dis Aquat Organ. 2017 Jun 19;125(1):73-78. doi: 10.3354/dao03126.

PMID:
28627494
9.

Prediction of harmful variants on mitochondrial genes: Test of habitat-dependent and demographic effects in a euryhaline fish.

Vasemägi A, Sulku J, Bruneaux M, Thalmann O, Mäkinen H, Ozerov M.

Ecol Evol. 2017 Apr 18;7(11):3826-3835. doi: 10.1002/ece3.2989. eCollection 2017 Jun.

10.

Comparative High-Density Linkage Mapping Reveals Conserved Genome Structure but Variation in Levels of Heterochiasmy and Location of Recombination Cold Spots in the Common Frog.

Palomar G, Ahmad F, Vasemägi A, Matsuba C, Nicieza AG, Cano JM.

G3 (Bethesda). 2017 Feb 9;7(2):637-645. doi: 10.1534/g3.116.036459.

11.

Is telomere length a molecular marker of past thermal stress in wild fish?

Debes PV, Visse M, Panda B, Ilmonen P, Vasemägi A.

Mol Ecol. 2016 Nov;25(21):5412-5424. doi: 10.1111/mec.13856. Epub 2016 Oct 17.

PMID:
27662607
12.

Can environmental DNA (eDNA) be used for detection and monitoring of introduced crab species in the Baltic Sea?

Forsström T, Vasemägi A.

Mar Pollut Bull. 2016 Aug 15;109(1):350-355. doi: 10.1016/j.marpolbul.2016.05.054. Epub 2016 May 31.

PMID:
27261280
13.

Genomewide introgressive hybridization patterns in wild Atlantic salmon influenced by inadvertent gene flow from hatchery releases.

Ozerov MY, Gross R, Bruneaux M, Vähä JP, Burimski O, Pukk L, Vasemägi A.

Mol Ecol. 2016 Mar;25(6):1275-93. doi: 10.1111/mec.13570. Epub 2016 Mar 1.

PMID:
26840557
14.

Genetic variation facilitates seedling establishment but not population growth rate of a perennial invader.

Li SL, Vasemägi A, Ramula S.

Ann Bot. 2016 Jan;117(1):187-94. doi: 10.1093/aob/mcv145. Epub 2015 Sep 29.

15.

Generation of a neutral FST baseline for testing local adaptation on gill raker number within and between European whitefish ecotypes in the Baltic Sea basin.

Ozerov MY, Himberg M, Aykanat T, Sendek DS, Hägerstrand H, Verliin A, Krause T, Olsson J, Primmer CR, Vasemägi A.

J Evol Biol. 2015 May;28(5):1170-83. doi: 10.1111/jeb.12645. Epub 2015 May 12.

16.

Use of sibling relationship reconstruction to complement traditional monitoring in fisheries management and conservation of brown trout.

Ozerov M, Jürgenstein T, Aykanat T, Vasemägi A.

Conserv Biol. 2015 Aug;29(4):1164-75. doi: 10.1111/cobi.12480. Epub 2015 Mar 13.

PMID:
25773302
17.

Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technology.

Pukk L, Ahmad F, Hasan S, Kisand V, Gross R, Vasemägi A.

Mol Ecol Resour. 2015 Sep;15(5):1145-52. doi: 10.1111/1755-0998.12392. Epub 2015 Mar 10.

PMID:
25703535
18.

Population genomic analyses of early-phase Atlantic Salmon (Salmo salar) domestication/captive breeding.

Mäkinen H, Vasemägi A, McGinnity P, Cross TF, Primmer CR.

Evol Appl. 2015 Jan;8(1):93-107. doi: 10.1111/eva.12230. Epub 2014 Nov 20.

19.

First microsatellite loci of the myxozoan parasite Tetracapsuloides bryosalmonae, the causative agent of proliferative kidney disease (PKD).

Hartikainen H, Filippenko D, Okamura B, Vasemägi A.

Dis Aquat Organ. 2015 Feb 10;113(1):85-8. doi: 10.3354/dao02833.

PMID:
25667341
20.

Differences in the metabolic response to temperature acclimation in nine-spined stickleback (Pungitius pungitius) populations from contrasting thermal environments.

Bruneaux M, Nikinmaa M, Laine VN, Lindström K, Primmer CR, Vasemägi A.

J Exp Zool A Ecol Genet Physiol. 2014 Dec;321(10):550-65. doi: 10.1002/jez.1889. Epub 2014 Nov 11.

PMID:
25389079
21.

Proliferative kidney disease (PKD) agent Tetracapsuloides bryosalmonae in brown trout populations in Estonia.

Dash M, Vasemägi A.

Dis Aquat Organ. 2014 May 13;109(2):139-48. doi: 10.3354/dao02731.

PMID:
24991741
22.

Proteome variance differences within populations of European whitefish (Coregonus lavaretus) originating from contrasting salinity environments.

Papakostas S, Vasemägi A, Himberg M, Primmer CR.

J Proteomics. 2014 Jun 13;105:144-50. doi: 10.1016/j.jprot.2013.12.019. Epub 2014 Jan 7.

PMID:
24406297
23.

Finding markers that make a difference: DNA pooling and SNP-arrays identify population informative markers for genetic stock identification.

Ozerov M, Vasemägi A, Wennevik V, Diaz-Fernandez R, Kent M, Gilbey J, Prusov S, Niemelä E, Vähä JP.

PLoS One. 2013 Dec 16;8(12):e82434. doi: 10.1371/journal.pone.0082434. eCollection 2013.

24.

Molecular identification of cryptic bumblebee species from degraded samples using PCR-RFLP approach.

Vesterlund SR, Sorvari J, Vasemägi A.

Mol Ecol Resour. 2014 Jan;14(1):122-6. doi: 10.1111/1755-0998.12168. Epub 2013 Oct 16.

PMID:
24128053
25.

Genetic mixed-stock analysis of lake-run brown trout Salmo trutta fishery catches in the Inari Basin, northern Finland: implications for conservation and management.

Swatdipong A, Vasemägi A, Niva T, Koljonen ML, Primmer CR.

J Fish Biol. 2013 Sep;83(3):598-617. doi: 10.1111/jfb.12199.

PMID:
23991877
26.

Fish scales and SNP chips: SNP genotyping and allele frequency estimation in individual and pooled DNA from historical samples of Atlantic salmon (Salmo salar).

Johnston SE, Lindqvist M, Niemelä E, Orell P, Erkinaro J, Kent MP, Lien S, Vähä JP, Vasemägi A, Primmer CR.

BMC Genomics. 2013 Jul 3;14:439. doi: 10.1186/1471-2164-14-439.

27.

Permanent genetic resources added to Molecular Ecology Resources Database 1 February 2013-31 March 2013.

Molecular Ecology Resources Primer Development Consortium, Arias MC, Atteke C, Augusto SC, Bailey J, Bazaga P, Beheregaray LB, Benoit L, Blatrix R, Born C, Brito RM, Chen HK, Covarrubias S, de Vega C, Djiéto-Lordon C, Dubois MP, Francisco FO, García C, Gonçalves PH, González C, Gutiérrez-Rodríguez C, Hammer MP, Herrera CM, Itoh H, Kamimura S, Karaoglu H, Kojima S, Li SL, Ling HJ, Matos-Maraví PF, McKey D, Mezui-M'Eko J, Ornelas JF, Park RF, Pozo MI, Ramula S, Rigueiro C, Sandoval-Castillo J, Santiago LR, Seino MM, Song CB, Takeshima H, Vasemägi A, Wellings CR, Yan J, Yu-Zhou D, Zhang CR, Zhang TY.

Mol Ecol Resour. 2013 Jul;13(4):760-2. doi: 10.1111/1755-0998.12121. Epub 2013 May 20.

PMID:
23693143
28.

Genetic and life-history changes associated with fisheries-induced population collapse.

Pukk L, Kuparinen A, Järv L, Gross R, Vasemägi A.

Evol Appl. 2013 Feb 25;6(5):749-760. doi: 10.1111/eva.12060. eCollection 2013 Jul.

29.

Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon.

Vasemägi A, Nilsson J, McGinnity P, Cross T, O'Reilly P, Glebe B, Peng B, Berg PR, Primmer CR.

Comp Funct Genomics. 2012;2012:628204. doi: 10.1155/2012/628204. Epub 2012 Dec 27.

30.

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.).

Ozerov M, Vasemägi A, Wennevik V, Niemelä E, Prusov S, Kent M, Vähä JP.

BMC Genomics. 2013 Jan 16;14:12. doi: 10.1186/1471-2164-14-12.

31.

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).

Bourret V, Kent MP, Primmer CR, Vasemägi A, Karlsson S, Hindar K, McGinnity P, Verspoor E, Bernatchez L, Lien S.

Mol Ecol. 2013 Feb;22(3):532-51. doi: 10.1111/mec.12003. Epub 2012 Sep 12.

PMID:
22967111
32.

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach.

Bruneaux M, Johnston SE, Herczeg G, Merilä J, Primmer CR, Vasemägi A.

Mol Ecol. 2013 Feb;22(3):565-82. doi: 10.1111/j.1365-294X.2012.05749.x. Epub 2012 Sep 3.

PMID:
22943747
33.

High lactose tolerance in North Europeans: a result of migration, not in situ milk consumption.

Vuorisalo T, Arjamaa O, Vasemägi A, Taavitsainen JP, Tourunen A, Saloniemi I.

Perspect Biol Med. 2012;55(2):163-74. doi: 10.1353/pbm.2012.0016. Review.

PMID:
22643754
34.

Permanent genetic resources added to Molecular Ecology Resources Database 1 February 2012 - 31 March 2012.

Molecular Ecology Resources Primer Development Consortium, Andris M, Arias MC, Barthel BL, Bluhm BH, Bried J, Canal D, Chen XM, Cheng P, Chiappero MB, Coelho MM, Collins AB, Dash M, Davis MC, Duarte M, Dubois MP, Françoso E, Galmes MA, Gopal K, Jarne P, Kalbe M, Karczmarski L, Kim H, Martella MB, McBride RS, Negri V, Negro JJ, Newell AD, Piedade AF, Puchulutegui C, Raggi L, Samonte IE, Sarasola JH, See DR, Seyoum S, Silva MC, Solaro C, Tolley KA, Tringali MD, Vasemägi A, Xu LS, Zanón-Martínez JI.

Mol Ecol Resour. 2012 Jul;12(4):779-81. doi: 10.1111/j.1755-0998.2012.03155.x. Epub 2012 May 30.

PMID:
22642264
35.

A proteomics approach reveals divergent molecular responses to salinity in populations of European whitefish (Coregonus lavaretus).

Papakostas S, Vasemägi A, Vähä JP, Himberg M, Peil L, Primmer CR.

Mol Ecol. 2012 Jul;21(14):3516-30. doi: 10.1111/j.1365-294X.2012.05553.x. Epub 2012 Apr 4.

PMID:
22486940
36.

High Gyrodactylus salaris infection rate in triploid Atlantic salmon Salmo salar.

Ozerov MY, Lumme J, Päkk P, Rintamäki P, Zietara MS, Barskaya Y, Lebedeva D, Saadre E, Gross R, Primmer CR, Vasemägi A.

Dis Aquat Organ. 2010 Sep 2;91(2):129-36. doi: 10.3354/dao02242.

37.

High level of population genetic structuring in lake-run brown trout, Salmo trutta, of the Inari Basin, northern Finland.

Swatdipong A, Vasemägi A, Niva T, Koljonen ML, Primmer CR.

J Fish Biol. 2010 Dec;77(9):2048-71. doi: 10.1111/j.1095-8649.2010.02784.x. Epub 2010 Oct 12.

PMID:
21133916
38.

Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon.

Vasemägi A, Gross R, Palm D, Paaver T, Primmer CR.

BMC Genomics. 2010 Mar 8;11:156. doi: 10.1186/1471-2164-11-156.

39.

Beyond MHC: signals of elevated selection pressure on Atlantic salmon (Salmo salar) immune-relevant loci.

Tonteri A, Vasemägi A, Lumme J, Primmer CR.

Mol Ecol. 2010 Apr;19(7):1273-82. doi: 10.1111/j.1365-294X.2010.04573.x. Epub 2010 Feb 24.

PMID:
20196809
40.

Eel mystery: time makes a difference.

Vasemägi A.

Heredity (Edinb). 2009 Jul;103(1):3-4. doi: 10.1038/hdy.2009.38. Epub 2009 Apr 15. No abstract available.

41.

Unanticipated population structure of European grayling in its northern distribution: implications for conservation prioritization.

Swatdipong A, Vasemägi A, Koskinen MT, Piironen J, Primmer CR.

Front Zool. 2009 Mar 30;6:6. doi: 10.1186/1742-9994-6-6.

42.

Use of differential expression data for identification of novel immune relevant expressed sequence tag-linked microsatellite markers in Atlantic salmon (Salmo salar L.).

Tonteri A, Vasemägi A, Lumme J, Primmer CR.

Mol Ecol Resour. 2008 Nov;8(6):1486-90. doi: 10.1111/j.1755-0998.2008.02317.x. Epub 2008 Aug 18.

PMID:
21586084
43.

A comparison of biallelic markers and microsatellites for the estimation of population and conservation genetic parameters in Atlantic salmon (Salmo salar).

Ryynänen HJ, Tonteri A, Vasemägi A, Primmer CR.

J Hered. 2007 Nov-Dec;98(7):692-704. Epub 2007 Nov 5.

PMID:
17986472
44.

The adaptive hypothesis of clinal variation revisited: single-locus clines as a result of spatially restricted gene flow.

Vasemägi A.

Genetics. 2006 Aug;173(4):2411-4. Epub 2006 Jul 18. Review. No abstract available.

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48.

Identification of the origin of an Atlantic salmon (Salmo salar L.) population in a recently recolonized river in the Baltic Sea.

Vasemägi A, Gross R, Paaver T, Kangur M, Nilsson J, Eriksson LO.

Mol Ecol. 2001 Dec;10(12):2877-82.

PMID:
11903899
49.

Matrilinear phylogeography of Atlantic salmon (Salmo salar L.) in Europe and postglacial colonization of the Baltic Sea area.

Nilsson J, Gross R, Asplund T, Dove O, Jansson H, Kelloniemi J, Kohlmann K, Löytynoja A, Nielsen EE, Paaver T, Primmer CR, Titov S, Vasemägi A, Veselov A, Ost T, Lumme J.

Mol Ecol. 2001 Jan;10(1):89-102.

PMID:
11251790

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