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Items: 1 to 50 of 233

1.

Kombucha: a novel model system for cooperation and conflict in a complex multi-species microbial ecosystem.

May A, Narayanan S, Alcock J, Varsani A, Maley C, Aktipis A.

PeerJ. 2019 Sep 3;7:e7565. doi: 10.7717/peerj.7565. eCollection 2019.

2.

Exploring the diversity of Poaceae-infecting mastreviruses on Reunion Island using a viral metagenomics-based approach.

Claverie S, Ouattara A, Hoareau M, Filloux D, Varsani A, Roumagnac P, Martin DP, Lett JM, Lefeuvre P.

Sci Rep. 2019 Sep 3;9(1):12716. doi: 10.1038/s41598-019-49134-9.

3.

Single Stranded DNA Viruses Associated with Capybara Faeces Sampled in Brazil.

Fontenele RS, Lacorte C, Lamas NS, Schmidlin K, Varsani A, Ribeiro SG.

Viruses. 2019 Aug 2;11(8). pii: E710. doi: 10.3390/v11080710.

4.

Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids.

Kazlauskas D, Varsani A, Koonin EV, Krupovic M.

Nat Commun. 2019 Jul 31;10(1):3425. doi: 10.1038/s41467-019-11433-0.

5.

Evolution and ecology of plant viruses.

Lefeuvre P, Martin DP, Elena SF, Shepherd DN, Roumagnac P, Varsani A.

Nat Rev Microbiol. 2019 Oct;17(10):632-644. doi: 10.1038/s41579-019-0232-3. Epub 2019 Jul 16. Review.

PMID:
31312033
6.

Novel smacoviruses identified in the faeces of two wild felids: North American bobcat and African lion.

Kraberger S, Serieys L, Fountain-Jones N, Packer C, Riley S, Varsani A.

Arch Virol. 2019 Sep;164(9):2395-2399. doi: 10.1007/s00705-019-04329-3. Epub 2019 Jun 22.

PMID:
31240485
7.

Diverse genomoviruses representing eight new and one known species identified in feces and nests of house finches (Haemorhous mexicanus).

Schmidlin K, Sepp T, Khalifeh A, Smith K, Fontenele RS, McGraw KJ, Varsani A.

Arch Virol. 2019 Sep;164(9):2345-2350. doi: 10.1007/s00705-019-04318-6. Epub 2019 Jun 18.

PMID:
31214783
8.

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).

Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Dempsey DM, Dutilh BE, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Sep;164(9):2417-2429. doi: 10.1007/s00705-019-04306-w.

PMID:
31187277
9.

Unravelling the Single-Stranded DNA Virome of the New Zealand Blackfly.

Kraberger S, Schmidlin K, Fontenele RS, Walters M, Varsani A.

Viruses. 2019 Jun 8;11(6). pii: E532. doi: 10.3390/v11060532.

10.

Genetic Characterization of a Recombinant Myxoma Virus in the Iberian Hare (Lepus granatensis).

Águeda-Pinto A, Lemos de Matos A, Abrantes M, Kraberger S, Risalde MA, Gortázar C, McFadden G, Varsani A, Esteves PJ.

Viruses. 2019 Jun 7;11(6). pii: E530. doi: 10.3390/v11060530.

11.

Structure of the Current Sheet in the 11 July 2017 Electron Diffusion Region Event.

Nakamura R, Genestreti KJ, Nakamura T, Baumjohann W, Varsani A, Nagai T, Bessho N, Burch JL, Denton RE, Eastwood JP, Ergun RE, Gershman DJ, Giles BL, Hasegawa H, Hesse M, Lindqvist PA, Russell CT, Stawarz JE, Strangeway RJ, Torbert RB.

J Geophys Res Space Phys. 2019 Feb;124(2):1173-1186. doi: 10.1029/2018JA026028. Epub 2019 Feb 27.

12.

Genome Sequences of Microviruses Associated with Coptotermes formosanus.

Schmidlin K, Kraberger S, Fontenele RS, De Martini F, Chouvenc T, Gile GH, Varsani A.

Microbiol Resour Announc. 2019 Apr 18;8(16). pii: e00185-19. doi: 10.1128/MRA.00185-19.

13.

Diverse single-stranded DNA viruses associated with honey bees (Apis mellifera).

Kraberger S, Cook CN, Schmidlin K, Fontenele RS, Bautista J, Smith B, Varsani A.

Infect Genet Evol. 2019 Jul;71:179-188. doi: 10.1016/j.meegid.2019.03.024. Epub 2019 Mar 27.

PMID:
30928605
14.

Evidence of age-related improvement in the foraging efficiency of Adélie penguins.

Lescroël A, Ballard G, Massaro M, Dugger K, Jennings S, Pollard A, Porzig E, Schmidt A, Varsani A, Grémillet D, Ainley D.

Sci Rep. 2019 Mar 4;9(1):3375. doi: 10.1038/s41598-019-39814-x.

15.

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).

Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfaçon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Mar;164(3):943-946. doi: 10.1007/s00705-018-04136-2.

PMID:
30663020
16.

Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Calisher CH, Briese T, Brister JR, Charrel RN, Dürrwald R, Ebihara H, Fulhorst CF, Gāo GF, Groschup MH, Haddow AD, Hyndman TH, Junglen S, Klempa B, Klingström J, Kropinski AM, Krupovic M, LaBeaud AD, Maes P, Nowotny N, Nunes MRT, Payne SL, Radoshitzky SR, Rubbenstroth D, Sabanadzovic S, Sasaya T, Stenglein MD, Varsani A, Wahl V, Weaver SC, Zerbini FM, Vasilakis N, Kuhn JH.

Syst Biol. 2019 Sep 1;68(5):828-839. doi: 10.1093/sysbio/syy087.

PMID:
30597118
17.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID:
30556814
18.

Genome Sequence of a Single-Stranded DNA Virus Identified in Gila Monster Feces.

Somayaji V, DeNardo D, Wilson Sayres MA, Blake M, Waits K, Fontenele RS, Kraberger S, Varsani A.

Microbiol Resour Announc. 2018 Aug 23;7(7). pii: e00925-18. doi: 10.1128/MRA.00925-18. eCollection 2018 Aug.

19.

Genome Sequence of a Gyrovirus Associated with Ashy Storm-Petrel.

Waits K, Bradley RW, Warzybok P, Kraberger S, Fontenele RS, Varsani A.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e00958-18. doi: 10.1128/MRA.00958-18. eCollection 2018 Sep.

20.

Virus discovery in all three major lineages of terrestrial arthropods highlights the diversity of single-stranded DNA viruses associated with invertebrates.

Rosario K, Mettel KA, Benner BE, Johnson R, Scott C, Yusseff-Vanegas SZ, Baker CCM, Cassill DL, Storer C, Varsani A, Breitbart M.

PeerJ. 2018 Oct 11;6:e5761. doi: 10.7717/peerj.5761. eCollection 2018.

21.

Identification of a new turncurtovirus in the leafhopper Circulifer haematoceps and the host plant species Sesamum indicum.

Hasanvand V, Kamali M, Heydarnejad J, Massumi H, Kvarnheden A, Varsani A.

Virus Genes. 2018 Dec;54(6):840-845. doi: 10.1007/s11262-018-1604-x. Epub 2018 Oct 11.

PMID:
30311179
22.

The Westward Journey of Alfalfa Leaf Curl Virus.

Davoodi Z, Bejerman N, Richet C, Filloux D, Kumari SG, Chatzivassiliou EK, Galzi S, Julian C, Samarfard S, Trucco V, Giolitti F, Fiallo-Olivé E, Navas-Castillo J, Asaad N, Moukahel AR, Hijazi J, Mghandef S, Heydarnejad J, Massumi H, Varsani A, Dietzgen RG, Harkins GW, Martin DP, Roumagnac P.

Viruses. 2018 Oct 4;10(10). pii: E542. doi: 10.3390/v10100542.

23.

Notes on recombination and reassortment in multipartite/segmented viruses.

Varsani A, Lefeuvre P, Roumagnac P, Martin D.

Curr Opin Virol. 2018 Dec;33:156-166. doi: 10.1016/j.coviro.2018.08.013. Epub 2018 Sep 17. Review.

PMID:
30237098
24.

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand.

Richet C, Kraberger S, Filloux D, Bernardo P, Harkins GW, Martin DP, Roumagnac P, Varsani A.

Arch Virol. 2019 Jan;164(1):237-242. doi: 10.1007/s00705-018-4031-3. Epub 2018 Sep 15.

PMID:
30220037
25.

Genomoviruses associated with mountain and western pine beetles.

Kraberger S, Hofstetter RW, Potter KA, Farkas K, Varsani A.

Virus Res. 2018 Sep 2;256:17-20. doi: 10.1016/j.virusres.2018.07.019. Epub 2018 Jul 27.

PMID:
30059700
26.

Correction to: Smacoviridae: a new family of animal-associated single-stranded DNA viruses.

Varsani A, Krupovic M.

Arch Virol. 2018 Nov;163(11):3213-3214. doi: 10.1007/s00705-018-3960-1.

PMID:
30054745
27.

Novel anelloviruses identified in buccal swabs of Antarctic fur seals.

Crane A, Goebel ME, Kraberger S, Stone AC, Varsani A.

Virus Genes. 2018 Oct;54(5):719-723. doi: 10.1007/s11262-018-1585-9. Epub 2018 Jul 3.

PMID:
29971737
28.

Multiscale Currents Observed by MMS in the Flow Braking Region.

Nakamura R, Varsani A, Genestreti KJ, Le Contel O, Nakamura T, Baumjohann W, Nagai T, Artemyev A, Birn J, Sergeev VA, Apatenkov S, Ergun RE, Fuselier SA, Gershman DJ, Giles BJ, Khotyaintsev YV, Lindqvist PA, Magnes W, Mauk B, Petrukovich A, Russell CT, Stawarz J, Strangeway RJ, Anderson B, Burch JL, Bromund KR, Cohen I, Fischer D, Jaynes A, Kepko L, Le G, Plaschke F, Reeves G, Singer HJ, Slavin JA, Torbert RB, Turner DL.

J Geophys Res Space Phys. 2018 Feb;123(2):1260-1278. doi: 10.1002/2017JA024686. Epub 2018 Feb 20.

29.

From Spatial Metagenomics to Molecular Characterization of Plant Viruses: A Geminivirus Case Study.

Claverie S, Bernardo P, Kraberger S, Hartnady P, Lefeuvre P, Lett JM, Galzi S, Filloux D, Harkins GW, Varsani A, Martin DP, Roumagnac P.

Adv Virus Res. 2018;101:55-83. doi: 10.1016/bs.aivir.2018.02.003. Epub 2018 May 7. Review.

PMID:
29908594
30.

Identification of circular single-stranded DNA viruses in faecal samples of Canada lynx (Lynx canadensis), moose (Alces alces) and snowshoe hare (Lepus americanus) inhabiting the Colorado San Juan Mountains.

Kraberger S, Waits K, Ivan J, Newkirk E, VandeWoude S, Varsani A.

Infect Genet Evol. 2018 Oct;64:1-8. doi: 10.1016/j.meegid.2018.06.001. Epub 2018 Jun 4.

PMID:
29879480
31.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2018 Sep;163(9):2601-2631. doi: 10.1007/s00705-018-3847-1. Epub 2018 May 12.

PMID:
29754305
32.

Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites.

Briddon RW, Martin DP, Roumagnac P, Navas-Castillo J, Fiallo-Olivé E, Moriones E, Lett JM, Zerbini FM, Varsani A.

Arch Virol. 2018 Sep;163(9):2587-2600. doi: 10.1007/s00705-018-3854-2. Epub 2018 May 9.

PMID:
29740680
33.

Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses.

Kazlauskas D, Varsani A, Krupovic M.

Viruses. 2018 Apr 10;10(4). pii: E187. doi: 10.3390/v10040187.

34.

Passion Fruit Chlorotic Mottle Virus: Molecular Characterization of a New Divergent Geminivirus in Brazil.

Fontenele RS, Abreu RA, Lamas NS, Alves-Freitas DMT, Vidal AH, Poppiel RR, Melo FL, Lacorte C, Martin DP, Campos MA, Varsani A, Ribeiro SG.

Viruses. 2018 Apr 2;10(4). pii: E169. doi: 10.3390/v10040169.

35.

Smacoviridae: a new family of animal-associated single-stranded DNA viruses.

Varsani A, Krupovic M.

Arch Virol. 2018 Jul;163(7):2005-2015. doi: 10.1007/s00705-018-3820-z. Epub 2018 Mar 23. Erratum in: Arch Virol. 2018 Nov;163(11):3213-3214.

PMID:
29572596
36.

Fish polyomaviruses belong to two distinct evolutionary lineages.

Van Doorslaer K, Kraberger S, Austin C, Farkas K, Bergeman M, Paunil E, Davison W, Varsani A.

J Gen Virol. 2018 Apr;99(4):567-573. doi: 10.1099/jgv.0.001041. Epub 2018 Mar 8.

37.

Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland.

Stenzel T, Dziewulska D, Muhire BM, Hartnady P, Kraberger S, Martin DP, Varsani A.

Viruses. 2018 Mar 2;10(3). pii: E107. doi: 10.3390/v10030107.

38.

Genome Sequences of Two Single-Stranded DNA Viruses Identified in Varroa destructor.

Kraberger S, Visnovsky GA, van Toor RF, Male MF, Waits K, Fontenele RS, Varsani A.

Genome Announc. 2018 Mar 1;6(9). pii: e00107-18. doi: 10.1128/genomeA.00107-18.

39.

Diverse papillomaviruses identified in Weddell seals.

Smeele ZE, Burns JM, Van Doorsaler K, Fontenele RS, Waits K, Stainton D, Shero MR, Beltran RS, Kirkham AL, Berngartt R, Kraberger S, Varsani A.

J Gen Virol. 2018 Apr;99(4):549-557. doi: 10.1099/jgv.0.001028. Epub 2018 Feb 22.

40.

Simultaneous Remote Observations of Intense Reconnection Effects by DMSP and MMS Spacecraft During a Storm Time Substorm.

Varsani A, Nakamura R, Sergeev VA, Baumjohann W, Owen CJ, Petrukovich AA, Yao Z, Nakamura TKM, Kubyshkina MV, Sotirelis T, Burch JL, Genestreti KJ, Vörös Z, Andriopoulou M, Gershman DJ, Avanov LA, Magnes W, Russell CT, Plaschke F, Khotyaintsev YV, Giles BL, Coffey VN, Dorelli JC, Strangeway RJ, Torbert RB, Lindqvist PA, Ergun R.

J Geophys Res Space Phys. 2017 Nov;122(11):10891-10909. doi: 10.1002/2017JA024547. Epub 2017 Nov 3.

41.

Nanovirus-alphasatellite complex identified in Vicia cracca in the Rhône delta region of France.

Gallet R, Kraberger S, Filloux D, Galzi S, Fontes H, Martin DP, Varsani A, Roumagnac P.

Arch Virol. 2018 Mar;163(3):695-700. doi: 10.1007/s00705-017-3634-4. Epub 2017 Nov 20.

PMID:
29159590
42.

Molecular characterization of faba bean necrotic yellows viruses in Tunisia.

Kraberger S, Kumari SG, Najar A, Stainton D, Martin DP, Varsani A.

Arch Virol. 2018 Mar;163(3):687-694. doi: 10.1007/s00705-017-3651-3. Epub 2017 Nov 17.

PMID:
29147784
43.

Identification of an anellovirus and genomoviruses in ixodid ticks.

Waits K, Edwards MJ, Cobb IN, Fontenele RS, Varsani A.

Virus Genes. 2018 Feb;54(1):155-159. doi: 10.1007/s11262-017-1520-5. Epub 2017 Nov 15.

PMID:
29143186
44.

Viruses associated with Antarctic wildlife: From serology based detection to identification of genomes using high throughput sequencing.

Smeele ZE, Ainley DG, Varsani A.

Virus Res. 2018 Jan 2;243:91-105. doi: 10.1016/j.virusres.2017.10.017. Epub 2017 Oct 27. Review.

PMID:
29111456
45.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale.

Bernardo P, Charles-Dominique T, Barakat M, Ortet P, Fernandez E, Filloux D, Hartnady P, Rebelo TA, Cousins SR, Mesleard F, Cohez D, Yavercovski N, Varsani A, Harkins GW, Peterschmitt M, Malmstrom CM, Martin DP, Roumagnac P.

ISME J. 2018 Jan;12(1):173-184. doi: 10.1038/ismej.2017.155. Epub 2017 Oct 20.

46.

Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins.

Van Doorslaer K, Ruoppolo V, Schmidt A, Lescroël A, Jongsomjit D, Elrod M, Kraberger S, Stainton D, Dugger KM, Ballard G, Ainley DG, Varsani A.

Virus Evol. 2017 Oct 6;3(2):vex027. doi: 10.1093/ve/vex027. eCollection 2017 Jul.

47.

Discovery of the first maize-infecting mastrevirus in the Americas using a vector-enabled metagenomics approach.

Fontenele RS, Alves-Freitas DMT, Silva PIT, Foresti J, Silva PR, Godinho MT, Varsani A, Ribeiro SG.

Arch Virol. 2018 Jan;163(1):263-267. doi: 10.1007/s00705-017-3571-2. Epub 2017 Sep 27.

PMID:
28956174
48.

A novel geminivirus identified in tomato and cleome plants sampled in Brazil.

Fontenele RS, Lamas NS, Lacorte C, Lacerda ALM, Varsani A, Ribeiro SG.

Virus Res. 2017 Aug 15;240:175-179. doi: 10.1016/j.virusres.2017.08.007. Epub 2017 Aug 23.

PMID:
28843502
49.

ICTV Virus Taxonomy Profile: Circoviridae.

Breitbart M, Delwart E, Rosario K, Segalés J, Varsani A, Ictv Report Consortium.

J Gen Virol. 2017 Aug;98(8):1997-1998. doi: 10.1099/jgv.0.000871. Epub 2017 Aug 8.

50.

Genome Sequence of a Podovirus (AAPEc6) Isolated from Wastewater in New Zealand That Infects Escherichia coli O45:H10.

Nonis J, Premaratne A, Billington C, Varsani A.

Genome Announc. 2017 Aug 3;5(31). pii: e00462-17. doi: 10.1128/genomeA.00462-17.

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