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Items: 1 to 50 of 248

1.

Viruses representing two new genomovirus species identified in citrus from Tunisia.

Chabi-Jesus C, Najar A, Fontenele RS, Kumari SG, Ramos-González PL, Freitas-Astúa J, Kraberger S, Varsani A.

Arch Virol. 2020 Mar 7. doi: 10.1007/s00705-020-04569-8. [Epub ahead of print]

PMID:
32146505
2.

Global Organization and Proposed Megataxonomy of the Virus World.

Koonin EV, Dolja VV, Krupovic M, Varsani A, Wolf YI, Yutin N, Zerbini FM, Kuhn JH.

Microbiol Mol Biol Rev. 2020 Mar 4;84(2). pii: e00061-19. doi: 10.1128/MMBR.00061-19. Print 2020 May 20. Review.

3.

Correction to: Binomial nomenclature for virus species: a consultation.

Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Dutilh BE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2020 Feb 17. doi: 10.1007/s00705-020-04555-0. [Epub ahead of print]

PMID:
32065315
4.

Immune protection is dependent on the gut microbiome in a lethal mouse gammaherpesviral infection.

Yaron JR, Ambadapadi S, Zhang L, Chavan RN, Tibbetts SA, Keinan S, Varsani A, Maldonado J, Kraberger S, Tafoya AM, Bullard WL, Kilbourne J, Stern-Harbutte A, Krajmalnik-Brown R, Munk BH, Koppang EO, Lim ES, Lucas AR.

Sci Rep. 2020 Feb 11;10(1):2371. doi: 10.1038/s41598-020-59269-9.

5.

Discovery of several thousand highly diverse circular DNA viruses.

Tisza MJ, Pastrana DV, Welch NL, Stewart B, Peretti A, Starrett GJ, Pang YS, Krishnamurthy SR, Pesavento PA, McDermott DH, Murphy PM, Whited JL, Miller B, Brenchley J, Rosshart SP, Rehermann B, Doorbar J, Ta'ala BA, Pletnikova O, Troncoso JC, Resnick SM, Bolduc B, Sullivan MB, Varsani A, Segall AM, Buck CB.

Elife. 2020 Feb 4;9. pii: e51971. doi: 10.7554/eLife.51971.

6.

Virus Discovery in Desert Tortoise Fecal Samples: Novel Circular Single-Stranded DNA Viruses.

Orton JP, Morales M, Fontenele RS, Schmidlin K, Kraberger S, Leavitt DJ, Webster TH, Wilson MA, Kusumi K, Dolby GA, Varsani A.

Viruses. 2020 Jan 26;12(2). pii: E143. doi: 10.3390/v12020143.

7.

Frequent cross-species transmissions of foamy virus between domestic and wild felids.

Kraberger S, Fountain-Jones NM, Gagne RB, Malmberg J, Dannemiller NG, Logan K, Alldredge M, Varsani A, Crooks KR, Craft M, Carver S, VandeWoude S.

Virus Evol. 2020 Jan 12;6(1):vez058. doi: 10.1093/ve/vez058. eCollection 2020 Jan.

8.

Symptom evolution following the emergence of maize streak virus.

Monjane AL, Dellicour S, Hartnady P, Oyeniran KA, Owor BE, Bezuidenhout M, Linderme D, Syed RA, Donaldson L, Murray S, Rybicki EP, Kvarnheden A, Yazdkhasti E, Lefeuvre P, Froissart R, Roumagnac P, Shepherd DN, Harkins GW, Suchard MA, Lemey P, Varsani A, Martin DP.

Elife. 2020 Jan 15;9. pii: e51984. doi: 10.7554/eLife.51984.

9.

Genome characterization of cetaceanpox virus from a managed Indo-Pacific bottlenose dolphin (Tursiops aduncus).

Rodrigues TCS, Subramaniam K, Varsani A, McFadden G, Schaefer AM, Bossart GD, Romero CH, Waltzek TB.

Virus Res. 2020 Mar;278:197861. doi: 10.1016/j.virusres.2020.197861. Epub 2020 Jan 7.

PMID:
31923559
10.

Identification of the wild and cultivated hosts of wheat dwarf virus and oat dwarf virus in Iran.

Pouramini N, Heydarnejad J, Massumi H, Varsani A.

Virusdisease. 2019 Dec;30(4):545-550. doi: 10.1007/s13337-019-00557-y. Epub 2019 Nov 28.

PMID:
31897417
11.

Binomial nomenclature for virus species: a consultation.

Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Dutilh BE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2020 Feb;165(2):519-525. doi: 10.1007/s00705-019-04477-6. Erratum in: Arch Virol. 2020 Feb 17;:.

12.

Novel nanovirus and associated alphasatellites identified in milk vetch plants with chlorotic dwarf disease in Iran.

Hassan-Sheikhi P, Heydarnejad J, Massumi H, Kraberger S, Varsani A.

Virus Res. 2020 Jan 15;276:197830. doi: 10.1016/j.virusres.2019.197830. Epub 2019 Nov 29.

PMID:
31790775
13.

Identification of a Novel Adélie Penguin Circovirus at Cape Crozier (Ross Island, Antarctica).

Morandini V, Dugger KM, Ballard G, Elrod M, Schmidt A, Ruoppolo V, Lescroël A, Jongsomjit D, Massaro M, Pennycook J, Kooyman GL, Schmidlin K, Kraberger S, Ainley DG, Varsani A.

Viruses. 2019 Nov 22;11(12). pii: E1088. doi: 10.3390/v11121088.

14.

Single-Stranded DNA Viruses in Antarctic Cryoconite Holes.

Sommers P, Fontenele RS, Kringen T, Kraberger S, Porazinska DL, Darcy JL, Schmidt SK, Varsani A.

Viruses. 2019 Nov 4;11(11). pii: E1022. doi: 10.3390/v11111022.

15.

Kombucha: a novel model system for cooperation and conflict in a complex multi-species microbial ecosystem.

May A, Narayanan S, Alcock J, Varsani A, Maley C, Aktipis A.

PeerJ. 2019 Sep 3;7:e7565. doi: 10.7717/peerj.7565. eCollection 2019.

16.

Exploring the diversity of Poaceae-infecting mastreviruses on Reunion Island using a viral metagenomics-based approach.

Claverie S, Ouattara A, Hoareau M, Filloux D, Varsani A, Roumagnac P, Martin DP, Lett JM, Lefeuvre P.

Sci Rep. 2019 Sep 3;9(1):12716. doi: 10.1038/s41598-019-49134-9.

17.

Single Stranded DNA Viruses Associated with Capybara Faeces Sampled in Brazil.

Fontenele RS, Lacorte C, Lamas NS, Schmidlin K, Varsani A, Ribeiro SG.

Viruses. 2019 Aug 2;11(8). pii: E710. doi: 10.3390/v11080710.

18.

Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids.

Kazlauskas D, Varsani A, Koonin EV, Krupovic M.

Nat Commun. 2019 Jul 31;10(1):3425. doi: 10.1038/s41467-019-11433-0.

19.

Evolution and ecology of plant viruses.

Lefeuvre P, Martin DP, Elena SF, Shepherd DN, Roumagnac P, Varsani A.

Nat Rev Microbiol. 2019 Oct;17(10):632-644. doi: 10.1038/s41579-019-0232-3. Epub 2019 Jul 16. Review.

PMID:
31312033
20.

Novel smacoviruses identified in the faeces of two wild felids: North American bobcat and African lion.

Kraberger S, Serieys L, Fountain-Jones N, Packer C, Riley S, Varsani A.

Arch Virol. 2019 Sep;164(9):2395-2399. doi: 10.1007/s00705-019-04329-3. Epub 2019 Jun 22.

21.

Diverse genomoviruses representing eight new and one known species identified in feces and nests of house finches (Haemorhous mexicanus).

Schmidlin K, Sepp T, Khalifeh A, Smith K, Fontenele RS, McGraw KJ, Varsani A.

Arch Virol. 2019 Sep;164(9):2345-2350. doi: 10.1007/s00705-019-04318-6. Epub 2019 Jun 18.

PMID:
31214783
22.

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).

Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Dempsey DM, Dutilh BE, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Sep;164(9):2417-2429. doi: 10.1007/s00705-019-04306-w.

PMID:
31187277
23.

Unravelling the Single-Stranded DNA Virome of the New Zealand Blackfly.

Kraberger S, Schmidlin K, Fontenele RS, Walters M, Varsani A.

Viruses. 2019 Jun 8;11(6). pii: E532. doi: 10.3390/v11060532.

24.

Genetic Characterization of a Recombinant Myxoma Virus in the Iberian Hare (Lepus granatensis).

Águeda-Pinto A, Lemos de Matos A, Abrantes M, Kraberger S, Risalde MA, Gortázar C, McFadden G, Varsani A, Esteves PJ.

Viruses. 2019 Jun 7;11(6). pii: E530. doi: 10.3390/v11060530.

25.

Structure of the Current Sheet in the 11 July 2017 Electron Diffusion Region Event.

Nakamura R, Genestreti KJ, Nakamura T, Baumjohann W, Varsani A, Nagai T, Bessho N, Burch JL, Denton RE, Eastwood JP, Ergun RE, Gershman DJ, Giles BL, Hasegawa H, Hesse M, Lindqvist PA, Russell CT, Stawarz JE, Strangeway RJ, Torbert RB.

J Geophys Res Space Phys. 2019 Feb;124(2):1173-1186. doi: 10.1029/2018JA026028. Epub 2019 Feb 27.

26.

Genome Sequences of Microviruses Associated with Coptotermes formosanus.

Schmidlin K, Kraberger S, Fontenele RS, De Martini F, Chouvenc T, Gile GH, Varsani A.

Microbiol Resour Announc. 2019 Apr 18;8(16). pii: e00185-19. doi: 10.1128/MRA.00185-19.

27.

Diverse single-stranded DNA viruses associated with honey bees (Apis mellifera).

Kraberger S, Cook CN, Schmidlin K, Fontenele RS, Bautista J, Smith B, Varsani A.

Infect Genet Evol. 2019 Jul;71:179-188. doi: 10.1016/j.meegid.2019.03.024. Epub 2019 Mar 27.

PMID:
30928605
28.

Evidence of age-related improvement in the foraging efficiency of Adélie penguins.

Lescroël A, Ballard G, Massaro M, Dugger K, Jennings S, Pollard A, Porzig E, Schmidt A, Varsani A, Grémillet D, Ainley D.

Sci Rep. 2019 Mar 4;9(1):3375. doi: 10.1038/s41598-019-39814-x.

29.

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).

Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfaçon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Mar;164(3):943-946. doi: 10.1007/s00705-018-04136-2.

PMID:
30663020
30.

Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Calisher CH, Briese T, Brister JR, Charrel RN, Dürrwald R, Ebihara H, Fulhorst CF, Gāo GF, Groschup MH, Haddow AD, Hyndman TH, Junglen S, Klempa B, Klingström J, Kropinski AM, Krupovic M, LaBeaud AD, Maes P, Nowotny N, Nunes MRT, Payne SL, Radoshitzky SR, Rubbenstroth D, Sabanadzovic S, Sasaya T, Stenglein MD, Varsani A, Wahl V, Weaver SC, Zerbini FM, Vasilakis N, Kuhn JH.

Syst Biol. 2019 Sep 1;68(5):828-839. doi: 10.1093/sysbio/syy087.

PMID:
30597118
31.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

32.

Genome Sequence of a Single-Stranded DNA Virus Identified in Gila Monster Feces.

Somayaji V, DeNardo D, Wilson Sayres MA, Blake M, Waits K, Fontenele RS, Kraberger S, Varsani A.

Microbiol Resour Announc. 2018 Aug 23;7(7). pii: e00925-18. doi: 10.1128/MRA.00925-18. eCollection 2018 Aug.

33.

Genome Sequence of a Gyrovirus Associated with Ashy Storm-Petrel.

Waits K, Bradley RW, Warzybok P, Kraberger S, Fontenele RS, Varsani A.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e00958-18. doi: 10.1128/MRA.00958-18. eCollection 2018 Sep.

34.

Virus discovery in all three major lineages of terrestrial arthropods highlights the diversity of single-stranded DNA viruses associated with invertebrates.

Rosario K, Mettel KA, Benner BE, Johnson R, Scott C, Yusseff-Vanegas SZ, Baker CCM, Cassill DL, Storer C, Varsani A, Breitbart M.

PeerJ. 2018 Oct 11;6:e5761. doi: 10.7717/peerj.5761. eCollection 2018.

35.

Identification of a new turncurtovirus in the leafhopper Circulifer haematoceps and the host plant species Sesamum indicum.

Hasanvand V, Kamali M, Heydarnejad J, Massumi H, Kvarnheden A, Varsani A.

Virus Genes. 2018 Dec;54(6):840-845. doi: 10.1007/s11262-018-1604-x. Epub 2018 Oct 11.

PMID:
30311179
36.

The Westward Journey of Alfalfa Leaf Curl Virus.

Davoodi Z, Bejerman N, Richet C, Filloux D, Kumari SG, Chatzivassiliou EK, Galzi S, Julian C, Samarfard S, Trucco V, Giolitti F, Fiallo-Olivé E, Navas-Castillo J, Asaad N, Moukahel AR, Hijazi J, Mghandef S, Heydarnejad J, Massumi H, Varsani A, Dietzgen RG, Harkins GW, Martin DP, Roumagnac P.

Viruses. 2018 Oct 4;10(10). pii: E542. doi: 10.3390/v10100542.

37.

Notes on recombination and reassortment in multipartite/segmented viruses.

Varsani A, Lefeuvre P, Roumagnac P, Martin D.

Curr Opin Virol. 2018 Dec;33:156-166. doi: 10.1016/j.coviro.2018.08.013. Epub 2018 Sep 17. Review.

PMID:
30237098
38.

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand.

Richet C, Kraberger S, Filloux D, Bernardo P, Harkins GW, Martin DP, Roumagnac P, Varsani A.

Arch Virol. 2019 Jan;164(1):237-242. doi: 10.1007/s00705-018-4031-3. Epub 2018 Sep 15.

PMID:
30220037
39.

Genomoviruses associated with mountain and western pine beetles.

Kraberger S, Hofstetter RW, Potter KA, Farkas K, Varsani A.

Virus Res. 2018 Sep 2;256:17-20. doi: 10.1016/j.virusres.2018.07.019. Epub 2018 Jul 27.

PMID:
30059700
40.

Correction to: Smacoviridae: a new family of animal-associated single-stranded DNA viruses.

Varsani A, Krupovic M.

Arch Virol. 2018 Nov;163(11):3213-3214. doi: 10.1007/s00705-018-3960-1.

PMID:
30054745
41.

Novel anelloviruses identified in buccal swabs of Antarctic fur seals.

Crane A, Goebel ME, Kraberger S, Stone AC, Varsani A.

Virus Genes. 2018 Oct;54(5):719-723. doi: 10.1007/s11262-018-1585-9. Epub 2018 Jul 3.

PMID:
29971737
42.

Multiscale Currents Observed by MMS in the Flow Braking Region.

Nakamura R, Varsani A, Genestreti KJ, Le Contel O, Nakamura T, Baumjohann W, Nagai T, Artemyev A, Birn J, Sergeev VA, Apatenkov S, Ergun RE, Fuselier SA, Gershman DJ, Giles BJ, Khotyaintsev YV, Lindqvist PA, Magnes W, Mauk B, Petrukovich A, Russell CT, Stawarz J, Strangeway RJ, Anderson B, Burch JL, Bromund KR, Cohen I, Fischer D, Jaynes A, Kepko L, Le G, Plaschke F, Reeves G, Singer HJ, Slavin JA, Torbert RB, Turner DL.

J Geophys Res Space Phys. 2018 Feb;123(2):1260-1278. doi: 10.1002/2017JA024686. Epub 2018 Feb 20.

43.

From Spatial Metagenomics to Molecular Characterization of Plant Viruses: A Geminivirus Case Study.

Claverie S, Bernardo P, Kraberger S, Hartnady P, Lefeuvre P, Lett JM, Galzi S, Filloux D, Harkins GW, Varsani A, Martin DP, Roumagnac P.

Adv Virus Res. 2018;101:55-83. doi: 10.1016/bs.aivir.2018.02.003. Epub 2018 May 7. Review.

PMID:
29908594
44.

Identification of circular single-stranded DNA viruses in faecal samples of Canada lynx (Lynx canadensis), moose (Alces alces) and snowshoe hare (Lepus americanus) inhabiting the Colorado San Juan Mountains.

Kraberger S, Waits K, Ivan J, Newkirk E, VandeWoude S, Varsani A.

Infect Genet Evol. 2018 Oct;64:1-8. doi: 10.1016/j.meegid.2018.06.001. Epub 2018 Jun 4.

PMID:
29879480
45.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2018 Sep;163(9):2601-2631. doi: 10.1007/s00705-018-3847-1. Epub 2018 May 12.

PMID:
29754305
46.

Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites.

Briddon RW, Martin DP, Roumagnac P, Navas-Castillo J, Fiallo-Olivé E, Moriones E, Lett JM, Zerbini FM, Varsani A.

Arch Virol. 2018 Sep;163(9):2587-2600. doi: 10.1007/s00705-018-3854-2. Epub 2018 May 9.

PMID:
29740680
47.

Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses.

Kazlauskas D, Varsani A, Krupovic M.

Viruses. 2018 Apr 10;10(4). pii: E187. doi: 10.3390/v10040187.

48.

Passion Fruit Chlorotic Mottle Virus: Molecular Characterization of a New Divergent Geminivirus in Brazil.

Fontenele RS, Abreu RA, Lamas NS, Alves-Freitas DMT, Vidal AH, Poppiel RR, Melo FL, Lacorte C, Martin DP, Campos MA, Varsani A, Ribeiro SG.

Viruses. 2018 Apr 2;10(4). pii: E169. doi: 10.3390/v10040169.

49.

Smacoviridae: a new family of animal-associated single-stranded DNA viruses.

Varsani A, Krupovic M.

Arch Virol. 2018 Jul;163(7):2005-2015. doi: 10.1007/s00705-018-3820-z. Epub 2018 Mar 23. Erratum in: Arch Virol. 2018 Nov;163(11):3213-3214.

PMID:
29572596
50.

Fish polyomaviruses belong to two distinct evolutionary lineages.

Van Doorslaer K, Kraberger S, Austin C, Farkas K, Bergeman M, Paunil E, Davison W, Varsani A.

J Gen Virol. 2018 Apr;99(4):567-573. doi: 10.1099/jgv.0.001041. Epub 2018 Mar 8.

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