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Items: 13

1.

Complete Sequence, Multichromosomal Architecture and Transcriptome Analysis of the Solanum tuberosum Mitochondrial Genome.

Varré JS, D'Agostino N, Touzet P, Gallina S, Tamburino R, Cantarella C, Ubrig E, Cardi T, Drouard L, Gualberto JM, Scotti N.

Int J Mol Sci. 2019 Sep 26;20(19). pii: E4788. doi: 10.3390/ijms20194788.

2.

Graph analysis of fragmented long-read bacterial genome assemblies.

Marijon P, Chikhi R, Varré JS.

Bioinformatics. 2019 Nov 1;35(21):4239-4246. doi: 10.1093/bioinformatics/btz219.

PMID:
30918948
3.

A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43.

Maurier F, Beury D, Fléchon L, Varré JS, Touzet H, Goffard A, Hot D, Caboche S.

Virology. 2019 May;531:141-148. doi: 10.1016/j.virol.2019.03.006. Epub 2019 Mar 9.

4.

Assisted transcriptome reconstruction and splicing orthology.

Blanquart S, Varré JS, Guertin P, Perrin A, Bergeron A, Swenson KM.

BMC Genomics. 2016 Nov 11;17(Suppl 10):786. doi: 10.1186/s12864-016-3103-6.

5.

ProCARs: Progressive Reconstruction of Ancestral Gene Orders.

Perrin A, Varré JS, Blanquart S, Ouangraoua A.

BMC Genomics. 2015;16 Suppl 5:S6. doi: 10.1186/1471-2164-16-S5-S6. Epub 2015 May 26.

6.

Retention-error patterns in complex alphanumeric serial-recall tasks.

Mathy F, Varré JS.

Memory. 2013;21(8):945-68. doi: 10.1080/09658211.2013.769607. Epub 2013 Mar 14. Erratum in: Memory. 2013;21(8):i.

PMID:
23485108
7.

Genome dedoubling by DCJ and reversal.

Thomas A, Varré JS, Ouangraoua A.

BMC Bioinformatics. 2011 Oct 5;12 Suppl 9:S20. doi: 10.1186/1471-2105-12-S9-S20.

8.

Structural and content diversity of mitochondrial genome in beet: a comparative genomic analysis.

Darracq A, Varré JS, Maréchal-Drouard L, Courseaux A, Castric V, Saumitou-Laprade P, Oztas S, Lenoble P, Vacherie B, Barbe V, Touzet P.

Genome Biol Evol. 2011;3:723-36. doi: 10.1093/gbe/evr042. Epub 2011 May 21.

9.

TFM-Explorer: mining cis-regulatory regions in genomes.

Tonon L, Touzet H, Varré JS.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W286-92. doi: 10.1093/nar/gkq473. Epub 2010 Jun 3.

10.

A scenario of mitochondrial genome evolution in maize based on rearrangement events.

Darracq A, Varré JS, Touzet P.

BMC Genomics. 2010 Apr 9;11:233. doi: 10.1186/1471-2164-11-233.

11.

Efficient and accurate P-value computation for Position Weight Matrices.

Touzet H, Varré JS.

Algorithms Mol Biol. 2007 Dec 11;2:15.

12.

Evolution of plant-like crystalline storage polysaccharide in the protozoan parasite Toxoplasma gondii argues for a red alga ancestry.

Coppin A, Varré JS, Lienard L, Dauvillée D, Guérardel Y, Soyer-Gobillard MO, Buléon A, Ball S, Tomavo S.

J Mol Evol. 2005 Feb;60(2):257-67.

PMID:
15785854
13.

Transformation distances: a family of dissimilarity measures based on movements of segments.

Varré JS, Delahaye JP, Rivals E.

Bioinformatics. 1999 Mar;15(3):194-202.

PMID:
10222406

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