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Items: 22

1.

Mycobacterium abscessus virulence traits unraveled by transcriptomic profiling in amoeba and macrophages.

Dubois V, Pawlik A, Bories A, Le Moigne V, Sismeiro O, Legendre R, Varet H, Rodríguez-Ordóñez MDP, Gaillard JL, Coppée JY, Brosch R, Herrmann JL, Girard-Misguich F.

PLoS Pathog. 2019 Nov 8;15(11):e1008069. doi: 10.1371/journal.ppat.1008069. eCollection 2019 Nov.

2.

Non-specific interference of cobalt with siderophore-dependent iron uptake pathways.

Carballido Lopez A, Cunrath O, Forster A, Pérard J, Graulier G, Legendre R, Varet H, Sismeiro O, Perraud Q, Pesset B, Saint Auguste P, Bumann D, Mislin GLA, Coppee JY, Michaud-Soret I, Fechter P, Schalk IJ.

Metallomics. 2019 Nov 1;11(11):1937-1951. doi: 10.1039/c9mt00195f. Epub 2019 Oct 21.

PMID:
31633703
3.

Correction: Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype.

Hommel B, Sturny-Leclère A, Volant S, Veluppillai N, Duchateau M, Yu CH, Hourdel V, Varet H, Matondo M, Perfect JR, Casadevall A, Dromer F, Alanio A.

PLoS Pathog. 2019 Sep 17;15(9):e1008070. doi: 10.1371/journal.ppat.1008070. eCollection 2019 Sep.

4.

Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid.

Van den Bossche A, Varet H, Sury A, Sismeiro O, Legendre R, Coppee JY, Mathys V, Ceyssens PJ.

Tuberculosis (Edinb). 2019 Jul;117:18-23. doi: 10.1016/j.tube.2019.05.002. Epub 2019 May 15.

5.

Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype.

Hommel B, Sturny-Leclère A, Volant S, Veluppillai N, Duchateau M, Yu CH, Hourdel V, Varet H, Matondo M, Perfect JR, Casadevall A, Dromer F, Alanio A.

PLoS Pathog. 2019 Jul 29;15(7):e1007945. doi: 10.1371/journal.ppat.1007945. eCollection 2019 Jul. Erratum in: PLoS Pathog. 2019 Sep 17;15(9):e1008070.

6.

Immune parameters and outcomes during Ebola virus disease.

Reynard S, Journeaux A, Gloaguen E, Schaeffer J, Varet H, Pietrosemoli N, Mateo M, Baillet N, Laouenan C, Raoul H, Mullaert J, Baize S.

JCI Insight. 2019 Jan 10;4(1). pii: 125106. doi: 10.1172/jci.insight.125106. [Epub ahead of print]

7.

checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes.

Varet H, Coppée JY.

Bioinformatics. 2019 Mar 1;35(5):901-902. doi: 10.1093/bioinformatics/bty706.

8.

Enteric bacteria boost defences against oxidative stress in Entamoeba histolytica.

Varet H, Shaulov Y, Sismeiro O, Trebicz-Geffen M, Legendre R, Coppée JY, Ankri S, Guillen N.

Sci Rep. 2018 Jun 13;8(1):9042. doi: 10.1038/s41598-018-27086-w.

9.

Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries.

Randrianjatovo-Gbalou I, Rosario S, Sismeiro O, Varet H, Legendre R, Coppée JY, Huteau V, Pochet S, Delarue M.

Nucleic Acids Res. 2018 Jul 6;46(12):6271-6284. doi: 10.1093/nar/gky413.

10.

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation.

Krin E, Pierlé SA, Sismeiro O, Jagla B, Dillies MA, Varet H, Irazoki O, Campoy S, Rouy Z, Cruveiller S, Médigue C, Coppée JY, Mazel D.

BMC Genomics. 2018 May 21;19(1):373. doi: 10.1186/s12864-018-4716-8.

11.

A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9.

Cui L, Vigouroux A, Rousset F, Varet H, Khanna V, Bikard D.

Nat Commun. 2018 May 15;9(1):1912. doi: 10.1038/s41467-018-04209-5.

12.

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut.

Raquin V, Merkling SH, Gausson V, Moltini-Conclois I, Frangeul L, Varet H, Dillies MA, Saleh MC, Lambrechts L.

PLoS Negl Trop Dis. 2017 Dec 19;11(12):e0006152. doi: 10.1371/journal.pntd.0006152. eCollection 2017 Dec.

13.

In Situ Fixation Redefines Quiescence and Early Activation of Skeletal Muscle Stem Cells.

Machado L, Esteves de Lima J, Fabre O, Proux C, Legendre R, Szegedi A, Varet H, Ingerslev LR, Barrès R, Relaix F, Mourikis P.

Cell Rep. 2017 Nov 14;21(7):1982-1993. doi: 10.1016/j.celrep.2017.10.080.

14.

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite.

Farasin J, Koechler S, Varet H, Deschamps J, Dillies MA, Proux C, Erhardt M, Huber A, Jagla B, Briandet R, Coppée JY, Arsène-Ploetze F.

Microb Biotechnol. 2017 Jul;10(4):789-803. doi: 10.1111/1751-7915.12556. Epub 2017 Feb 7.

15.

Promyelocytic Leukemia Protein (PML) Controls Listeria monocytogenes Infection.

Ribet D, Lallemand-Breitenbach V, Ferhi O, Nahori MA, Varet H, de Thé H, Cossart P.

mBio. 2017 Jan 10;8(1). pii: e02179-16. doi: 10.1128/mBio.02179-16.

16.

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment.

Weber C, Koutero M, Dillies MA, Varet H, Lopez-Camarillo C, Coppée JY, Hon CC, Guillén N.

Sci Rep. 2016 Oct 21;6:35852. doi: 10.1038/srep35852.

17.

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data.

Varet H, Brillet-Guéguen L, Coppée JY, Dillies MA.

PLoS One. 2016 Jun 9;11(6):e0157022. doi: 10.1371/journal.pone.0157022. eCollection 2016.

18.

Gender as a Modifying Factor Influencing Myotonic Dystrophy Type 1 Phenotype Severity and Mortality: A Nationwide Multiple Databases Cross-Sectional Observational Study.

Dogan C, De Antonio M, Hamroun D, Varet H, Fabbro M, Rougier F, Amarof K, Arne Bes MC, Bedat-Millet AL, Behin A, Bellance R, Bouhour F, Boutte C, Boyer F, Campana-Salort E, Chapon F, Cintas P, Desnuelle C, Deschamps R, Drouin-Garraud V, Ferrer X, Gervais-Bernard H, Ghorab K, Laforet P, Magot A, Magy L, Menard D, Minot MC, Nadaj-Pakleza A, Pellieux S, Pereon Y, Preudhomme M, Pouget J, Sacconi S, Sole G, Stojkovich T, Tiffreau V, Urtizberea A, Vial C, Zagnoli F, Caranhac G, Bourlier C, Riviere G, Geille A, Gherardi RK, Eymard B, Puymirat J, Katsahian S, Bassez G.

PLoS One. 2016 Feb 5;11(2):e0148264. doi: 10.1371/journal.pone.0148264. eCollection 2016.

19.

Deficiency of multidrug resistance 2 contributes to cell transformation through oxidative stress.

Tebbi A, Levillayer F, Jouvion G, Fiette L, Soubigou G, Varet H, Boudjadja N, Cairo S, Hashimoto K, Suzuki AM, Carninci P, Carissimo A, di Bernardo D, Wei Y.

Carcinogenesis. 2016 Jan;37(1):39-48. doi: 10.1093/carcin/bgv156. Epub 2015 Nov 5.

20.

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns.

Balloy V, Varet H, Dillies MA, Proux C, Jagla B, Coppée JY, Tabary O, Corvol H, Chignard M, Guillot L.

PLoS One. 2015 Oct 20;10(10):e0140979. doi: 10.1371/journal.pone.0140979. eCollection 2015.

21.

Ventilator-associated pneumonia during weaning from mechanical ventilation: role of fluid management.

Mekontso Dessap A, Katsahian S, Roche-Campo F, Varet H, Kouatchet A, Tomicic V, Beduneau G, Sonneville R, Jaber S, Darmon M, Castanares-Zapatero D, Brochard L, Brun-Buisson C.

Chest. 2014 Jul;146(1):58-65. doi: 10.1378/chest.13-2564.

PMID:
24652410
22.

Revisiting the classification of clinical phenotypes of anti-neutrophil cytoplasmic antibody-associated vasculitis: a cluster analysis.

Mahr A, Katsahian S, Varet H, Guillevin L, Hagen EC, Höglund P, Merkel PA, Pagnoux C, Rasmussen N, Westman K, Jayne DR; French Vasculitis Study Group (FVSG) and the European Vasculitis Society (EUVAS).

Ann Rheum Dis. 2013 Jun;72(6):1003-10. doi: 10.1136/annrheumdis-2012-201750. Epub 2012 Sep 8.

PMID:
22962314

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