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Items: 41

1.

A century-old mystery unveiled: Sekizaisou is a natural lignin mutant.

Yamamoto M, Tomiyama H, Koyama A, Okuizumi H, Liu S, Vanholme R, Goeminne G, Hirai Y, Shi H, Nuoendagula N, Takata N, Ikeda T, Uesugi M, Kim H, Sakamoto S, Mitsuda N, Boerjan WA, Ralph J, Kajita S.

Plant Physiol. 2020 Feb 12. pii: pp.01467.2019. doi: 10.1104/pp.19.01467. [Epub ahead of print] No abstract available.

2.

PIRIN2 suppresses S-type lignin accumulation in a noncell-autonomous manner in Arabidopsis xylem elements.

Zhang B, Sztojka B, Escamez S, Vanholme R, Hedenström M, Wang Y, Turumtay H, Gorzsás A, Boerjan W, Tuominen H.

New Phytol. 2020 Mar;225(5):1923-1935. doi: 10.1111/nph.16271. Epub 2019 Nov 11.

3.

COSY catalyses trans-cis isomerization and lactonization in the biosynthesis of coumarins.

Vanholme R, Sundin L, Seetso KC, Kim H, Liu X, Li J, De Meester B, Hoengenaert L, Goeminne G, Morreel K, Haustraete J, Tsai HH, Schmidt W, Vanholme B, Ralph J, Boerjan W.

Nat Plants. 2019 Oct;5(10):1066-1075. doi: 10.1038/s41477-019-0510-0. Epub 2019 Sep 9.

PMID:
31501530
4.

Lignin biosynthesis and its integration into metabolism.

Vanholme R, De Meester B, Ralph J, Boerjan W.

Curr Opin Biotechnol. 2019 Apr;56:230-239. doi: 10.1016/j.copbio.2019.02.018. Epub 2019 Mar 23. Review.

PMID:
30913460
5.

Introducing curcumin biosynthesis in Arabidopsis enhances lignocellulosic biomass processing.

Oyarce P, De Meester B, Fonseca F, de Vries L, Goeminne G, Pallidis A, De Rycke R, Tsuji Y, Li Y, Van den Bosch S, Sels B, Ralph J, Vanholme R, Boerjan W.

Nat Plants. 2019 Feb;5(2):225-237. doi: 10.1038/s41477-018-0350-3. Epub 2019 Jan 28.

PMID:
30692678
6.

Stacking of a low-lignin trait with an increased guaiacyl and 5-hydroxyguaiacyl unit trait leads to additive and synergistic effects on saccharification efficiency in Arabidopsis thaliana.

de Vries L, Vanholme R, Van Acker R, De Meester B, Sundin L, Boerjan W.

Biotechnol Biofuels. 2018 Sep 20;11:257. doi: 10.1186/s13068-018-1257-y. eCollection 2018.

7.

RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family.

Daly P, McClellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y, Goeminne G, Vanholme R, Boerjan W, Ralph J, Halpin C.

Plant Biotechnol J. 2019 Mar;17(3):594-607. doi: 10.1111/pbi.13001. Epub 2018 Oct 2.

8.

The effect of altered lignin composition on mechanical properties of CINNAMYL ALCOHOL DEHYDROGENASE (CAD) deficient poplars.

Özparpucu M, Gierlinger N, Burgert I, Van Acker R, Vanholme R, Boerjan W, Pilate G, Déjardin A, Rüggeberg M.

Planta. 2018 Apr;247(4):887-897. doi: 10.1007/s00425-017-2828-z. Epub 2017 Dec 21.

PMID:
29270675
9.

Vessel-Specific Reintroduction of CINNAMOYL-COA REDUCTASE1 (CCR1) in Dwarfed ccr1 Mutants Restores Vessel and Xylary Fiber Integrity and Increases Biomass.

De Meester B, de Vries L, Özparpucu M, Gierlinger N, Corneillie S, Pallidis A, Goeminne G, Morreel K, De Bruyne M, De Rycke R, Vanholme R, Boerjan W.

Plant Physiol. 2018 Jan;176(1):611-633. doi: 10.1104/pp.17.01462. Epub 2017 Nov 20.

10.

Silencing CAFFEOYL SHIKIMATE ESTERASE Affects Lignification and Improves Saccharification in Poplar.

Saleme MLS, Cesarino I, Vargas L, Kim H, Vanholme R, Goeminne G, Van Acker R, Fonseca FCA, Pallidis A, Voorend W, Junior JN, Padmakshan D, Van Doorsselaere J, Ralph J, Boerjan W.

Plant Physiol. 2017 Nov;175(3):1040-1057. doi: 10.1104/pp.17.00920. Epub 2017 Sep 6.

11.

Different Routes for Conifer- and Sinapaldehyde and Higher Saccharification upon Deficiency in the Dehydrogenase CAD1.

Van Acker R, Déjardin A, Desmet S, Hoengenaert L, Vanholme R, Morreel K, Laurans F, Kim H, Santoro N, Foster C, Goeminne G, Légée F, Lapierre C, Pilate G, Ralph J, Boerjan W.

Plant Physiol. 2017 Nov;175(3):1018-1039. doi: 10.1104/pp.17.00834. Epub 2017 Sep 6.

12.

Unravelling the impact of lignin on cell wall mechanics: a comprehensive study on young poplar trees downregulated for CINNAMYL ALCOHOL DEHYDROGENASE (CAD).

Özparpucu M, Rüggeberg M, Gierlinger N, Cesarino I, Vanholme R, Boerjan W, Burgert I.

Plant J. 2017 Aug;91(3):480-490. doi: 10.1111/tpj.13584. Epub 2017 Jun 25.

13.

Silencing CHALCONE SYNTHASE in Maize Impedes the Incorporation of Tricin into Lignin and Increases Lignin Content.

Eloy NB, Voorend W, Lan W, Saleme ML, Cesarino I, Vanholme R, Smith RA, Goeminne G, Pallidis A, Morreel K, Nicomedes J Jr, Ralph J, Boerjan W.

Plant Physiol. 2017 Feb;173(2):998-1016. doi: 10.1104/pp.16.01108. Epub 2016 Dec 9. Erratum in: Plant Physiol. 2017 Apr;173(4):2412.

14.

Degradation of lignin β-aryl ether units in Arabidopsis thaliana expressing LigD, LigF and LigG from Sphingomonas paucimobilis SYK-6.

Mnich E, Vanholme R, Oyarce P, Liu S, Lu F, Goeminne G, Jørgensen B, Motawie MS, Boerjan W, Ralph J, Ulvskov P, Møller BL, Bjarnholt N, Harholt J.

Plant Biotechnol J. 2017 May;15(5):581-593. doi: 10.1111/pbi.12655. Epub 2016 Nov 29.

15.

The Allelochemical MDCA Inhibits Lignification and Affects Auxin Homeostasis.

Steenackers W, Cesarino I, Klíma P, Quareshy M, Vanholme R, Corneillie S, Kumpf RP, Van de Wouwer D, Ljung K, Goeminne G, Novák O, Zažímalová E, Napier R, Boerjan W, Vanholme B.

Plant Physiol. 2016 Oct;172(2):874-888. Epub 2016 Aug 9.

16.

Chemical Genetics Uncovers Novel Inhibitors of Lignification, Including p-Iodobenzoic Acid Targeting CINNAMATE-4-HYDROXYLASE.

Van de Wouwer D, Vanholme R, Decou R, Goeminne G, Audenaert D, Nguyen L, Höfer R, Pesquet E, Vanholme B, Boerjan W.

Plant Physiol. 2016 Sep;172(1):198-220. doi: 10.1104/pp.16.00430. Epub 2016 Aug 2.

17.

Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.

Vargas L, Cesarino I, Vanholme R, Voorend W, de Lyra Soriano Saleme M, Morreel K, Boerjan W.

Biotechnol Biofuels. 2016 Jul 7;9:139. doi: 10.1186/s13068-016-0551-9. eCollection 2016.

18.

The Response of the Root Proteome to the Synthetic Strigolactone GR24 in Arabidopsis.

Walton A, Stes E, Goeminne G, Braem L, Vuylsteke M, Matthys C, De Cuyper C, Staes A, Vandenbussche J, Boyer FD, Vanholme R, Fromentin J, Boerjan W, Gevaert K, Goormachtig S.

Mol Cell Proteomics. 2016 Aug;15(8):2744-55. doi: 10.1074/mcp.M115.050062. Epub 2016 Jun 17.

19.

Overexpression of GA20-OXIDASE1 impacts plant height, biomass allocation and saccharification efficiency in maize.

Voorend W, Nelissen H, Vanholme R, De Vliegher A, Van Breusegem F, Boerjan W, Roldán-Ruiz I, Muylle H, Inzé D.

Plant Biotechnol J. 2016 Mar;14(3):997-1007. doi: 10.1111/pbi.12458. Epub 2015 Sep 7.

20.

Potential of genetically engineered hybrid poplar for pyrolytic production of bio-based phenolic compounds.

Toraman HE, Vanholme R, Borén E, Vanwonterghem Y, Djokic MR, Yildiz G, Ronsse F, Prins W, Boerjan W, Van Geem KM, Marin GB.

Bioresour Technol. 2016 May;207:229-36. doi: 10.1016/j.biortech.2016.02.022. Epub 2016 Feb 9.

PMID:
26890798
21.

Designer lignins: harnessing the plasticity of lignification.

Mottiar Y, Vanholme R, Boerjan W, Ralph J, Mansfield SD.

Curr Opin Biotechnol. 2016 Feb;37:190-200. doi: 10.1016/j.copbio.2015.10.009. Epub 2016 Jan 15. Review.

22.

Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα-dehydrogenase from Sphingobium sp. strain SYK-6.

Tsuji Y, Vanholme R, Tobimatsu Y, Ishikawa Y, Foster CE, Kamimura N, Hishiyama S, Hashimoto S, Shino A, Hara H, Sato-Izawa K, Oyarce P, Goeminne G, Morreel K, Kikuchi J, Takano T, Fukuda M, Katayama Y, Boerjan W, Ralph J, Masai E, Kajita S.

Plant Biotechnol J. 2015 Aug;13(6):821-32. doi: 10.1111/pbi.12316. Epub 2015 Jan 8.

23.

Mutation of the inducible ARABIDOPSIS THALIANA CYTOCHROME P450 REDUCTASE2 alters lignin composition and improves saccharification.

Sundin L, Vanholme R, Geerinck J, Goeminne G, Höfer R, Kim H, Ralph J, Boerjan W.

Plant Physiol. 2014 Dec;166(4):1956-71. doi: 10.1104/pp.114.245548. Epub 2014 Oct 14.

24.

The role of the secondary cell wall in plant resistance to pathogens.

Miedes E, Vanholme R, Boerjan W, Molina A.

Front Plant Sci. 2014 Aug 5;5:358. doi: 10.3389/fpls.2014.00358. eCollection 2014. Review.

25.

Transcript and metabolite profiling for the evaluation of tobacco tree and poplar as feedstock for the bio-based industry.

Ruprecht C, Tohge T, Fernie A, Mortimer CL, Kozlo A, Fraser PD, Funke N, Cesarino I, Vanholme R, Boerjan W, Morreel K, Burgert I, Gierlinger N, Bulone V, Schneider V, Stockero A, Navarro-Aviñó J, Pudel F, Tambuyser B, Hygate J, Bumstead J, Notley L, Persson S.

J Vis Exp. 2014 May 16;(87). doi: 10.3791/51393. Erratum in: J Vis Exp. 2016 Jun 30;(112):. [Corrected from Navarro, Juan Pedro] [Corrected to Navarro-Aviñó, Juan.].

26.

Systematic structural characterization of metabolites in Arabidopsis via candidate substrate-product pair networks.

Morreel K, Saeys Y, Dima O, Lu F, Van de Peer Y, Vanholme R, Ralph J, Vanholme B, Boerjan W.

Plant Cell. 2014 Mar;26(3):929-45. doi: 10.1105/tpc.113.122242. Epub 2014 Mar 31.

27.

Accumulation of N-acetylglucosamine oligomers in the plant cell wall affects plant architecture in a dose-dependent and conditional manner.

Vanholme B, Vanholme R, Turumtay H, Goeminne G, Cesarino I, Goubet F, Morreel K, Rencoret J, Bulone V, Hooijmaijers C, De Rycke R, Gheysen G, Ralph J, De Block M, Meulewaeter F, Boerjan W.

Plant Physiol. 2014 May;165(1):290-308. doi: 10.1104/pp.113.233742. Epub 2014 Mar 24.

28.

Lignification in sugarcane: biochemical characterization, gene discovery, and expression analysis in two genotypes contrasting for lignin content.

Bottcher A, Cesarino I, Santos AB, Vicentini R, Mayer JL, Vanholme R, Morreel K, Goeminne G, Moura JC, Nobile PM, Carmello-Guerreiro SM, Anjos IA, Creste S, Boerjan W, Landell MG, Mazzafera P.

Plant Physiol. 2013 Dec;163(4):1539-57. doi: 10.1104/pp.113.225250. Epub 2013 Oct 21.

29.

Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis.

Vanholme R, Cesarino I, Rataj K, Xiao Y, Sundin L, Goeminne G, Kim H, Cross J, Morreel K, Araujo P, Welsh L, Haustraete J, McClellan C, Vanholme B, Ralph J, Simpson GG, Halpin C, Boerjan W.

Science. 2013 Sep 6;341(6150):1103-6. doi: 10.1126/science.1241602. Epub 2013 Aug 15.

30.

Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana.

Van Acker R, Vanholme R, Storme V, Mortimer JC, Dupree P, Boerjan W.

Biotechnol Biofuels. 2013 Apr 26;6(1):46. doi: 10.1186/1754-6834-6-46.

31.

Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study.

Vanholme B, Cesarino I, Goeminne G, Kim H, Marroni F, Van Acker R, Vanholme R, Morreel K, Ivens B, Pinosio S, Morgante M, Ralph J, Bastien C, Boerjan W.

New Phytol. 2013 May;198(3):765-76. doi: 10.1111/nph.12179. Epub 2013 Feb 25.

32.

Metabolic engineering of novel lignin in biomass crops.

Vanholme R, Morreel K, Darrah C, Oyarce P, Grabber JH, Ralph J, Boerjan W.

New Phytol. 2012 Dec;196(4):978-1000. doi: 10.1111/j.1469-8137.2012.04337.x. Epub 2012 Oct 4. Review.

33.

A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis.

Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W.

Plant Cell. 2012 Sep;24(9):3506-29. doi: 10.1105/tpc.112.102574. Epub 2012 Sep 25.

34.

Impact of the absence of stem-specific β-glucosidases on lignin and monolignols.

Chapelle A, Morreel K, Vanholme R, Le-Bris P, Morin H, Lapierre C, Boerjan W, Jouanin L, Demont-Caulet N.

Plant Physiol. 2012 Nov;160(3):1204-17. doi: 10.1104/pp.112.203364. Epub 2012 Sep 14.

35.

Engineering traditional monolignols out of lignin by concomitant up-regulation of F5H1 and down-regulation of COMT in Arabidopsis.

Vanholme R, Ralph J, Akiyama T, Lu F, Pazo JR, Kim H, Christensen JH, Van Reusel B, Storme V, De Rycke R, Rohde A, Morreel K, Boerjan W.

Plant J. 2010 Dec;64(6):885-97. doi: 10.1111/j.1365-313X.2010.04353.x. Epub 2010 Oct 15.

36.

Potential of Arabidopsis systems biology to advance the biofuel field.

Vanholme R, Van Acker R, Boerjan W.

Trends Biotechnol. 2010 Nov;28(11):543-7. doi: 10.1016/j.tibtech.2010.07.008. Epub 2010 Aug 26.

PMID:
20800303
37.

Mass spectrometry-based fragmentation as an identification tool in lignomics.

Morreel K, Kim H, Lu F, Dima O, Akiyama T, Vanholme R, Niculaes C, Goeminne G, Inzé D, Messens E, Ralph J, Boerjan W.

Anal Chem. 2010 Oct 1;82(19):8095-105. doi: 10.1021/ac100968g.

PMID:
20795635
38.

Mass spectrometry-based sequencing of lignin oligomers.

Morreel K, Dima O, Kim H, Lu F, Niculaes C, Vanholme R, Dauwe R, Goeminne G, Inzé D, Messens E, Ralph J, Boerjan W.

Plant Physiol. 2010 Aug;153(4):1464-78. doi: 10.1104/pp.110.156489. Epub 2010 Jun 16.

39.

Walls are thin 1 (WAT1), an Arabidopsis homolog of Medicago truncatula NODULIN21, is a tonoplast-localized protein required for secondary wall formation in fibers.

Ranocha P, Denancé N, Vanholme R, Freydier A, Martinez Y, Hoffmann L, Köhler L, Pouzet C, Renou JP, Sundberg B, Boerjan W, Goffner D.

Plant J. 2010 Aug;63(3):469-83. doi: 10.1111/j.1365-313X.2010.04256.x. Epub 2010 May 20.

40.

Lignin biosynthesis and structure.

Vanholme R, Demedts B, Morreel K, Ralph J, Boerjan W.

Plant Physiol. 2010 Jul;153(3):895-905. doi: 10.1104/pp.110.155119. Epub 2010 May 14. No abstract available.

41.

Lignin engineering.

Vanholme R, Morreel K, Ralph J, Boerjan W.

Curr Opin Plant Biol. 2008 Jun;11(3):278-85. doi: 10.1016/j.pbi.2008.03.005. Epub 2008 Apr 21. Review.

PMID:
18434238

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