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Comparison of five assays for DNA extraction from bacterial cells in human fecal samples.

Gryp T, Glorieux G, Joossens M, Vaneechoutte M.

J Appl Microbiol. 2020 Feb 8. doi: 10.1111/jam.14608. [Epub ahead of print]


Comparative analysis of the vaginal microbiome of pregnant women with either Trichomonas vaginalis or Chlamydia trachomatis.

Masha SC, Owuor C, Ngoi JM, Cools P, Sanders EJ, Vaneechoutte M, Crucitti T, de Villiers EP.

PLoS One. 2019 Dec 12;14(12):e0225545. doi: 10.1371/journal.pone.0225545. eCollection 2019.


Nucleic acids enrichment of fungal pathogens to study host-pathogen interactions.

Rodríguez A, Guillemyn B, Coucke P, Vaneechoutte M.

Sci Rep. 2019 Dec 2;9(1):18037. doi: 10.1038/s41598-019-54608-x.


Interference of anti-streptavidin antibodies in immunoassays: a very rare phenomenon or a more common finding?

Verougstraete N, Berth M, Vaneechoutte M, Delanghe J, Callewaert N.

Clin Chem Lab Med. 2019 Nov 29. pii: /j/cclm.ahead-of-print/cclm-2019-1064/cclm-2019-1064.xml. doi: 10.1515/cclm-2019-1064. [Epub ahead of print]


Development of a qPCR platform for quantification of the five bacteriophages within bacteriophage cocktail 2 (BFC2).

Duyvejonck H, Merabishvili M, Pirnay JP, De Vos D, Verbeken G, Van Belleghem J, Gryp T, De Leenheer J, Van der Borght K, Van Simaey L, Vermeulen S, Van Mechelen E, Vaneechoutte M.

Sci Rep. 2019 Sep 25;9(1):13893. doi: 10.1038/s41598-019-50461-0.


Pneumococcal serotype 19A is the major cause of pediatric acute otitis media with ruptured tympanic membrane in Addis Ababa, Ethiopia, 5 years after the introduction of the ten-valent pneumococcal conjugate vaccine.

Negash AA, Asrat D, Abebe W, Hailemariam T, Gebre M, Aseffa A, Vaneechoutte M.

Int J Pediatr Otorhinolaryngol. 2019 Nov;126:109638. doi: 10.1016/j.ijporl.2019.109638. Epub 2019 Aug 13.


Pneumococcal Carriage, Serotype Distribution, and Risk Factors in Children With Community-Acquired Pneumonia, 5 Years After Introduction of the 10-Valent Pneumococcal Conjugate Vaccine in Ethiopia.

Negash AA, Asrat D, Abebe W, Hailemariam T, Gebre M, Verhaegen J, Aseffa A, Vaneechoutte M.

Open Forum Infect Dis. 2019 May 31;6(6):ofz259. doi: 10.1093/ofid/ofz259. eCollection 2019 Jun.


Bacteremic Community-Acquired Pneumonia in Ethiopian Children: Etiology, Antibiotic Resistance, Risk Factors, and Clinical Outcome.

Negash AA, Asrat D, Abebe W, Hailemariam T, Hailu T, Aseffa A, Vaneechoutte M.

Open Forum Infect Dis. 2019 Jan 23;6(3):ofz029. doi: 10.1093/ofid/ofz029. eCollection 2019 Mar.


Emended description of Gardnerella vaginalis and description of Gardnerella leopoldii sp. nov., Gardnerella piotii sp. nov. and Gardnerella swidsinskii sp. nov., with delineation of 13 genomic species within the genus Gardnerella.

Vaneechoutte M, Guschin A, Van Simaey L, Gansemans Y, Van Nieuwerburgh F, Cools P.

Int J Syst Evol Microbiol. 2019 Mar;69(3):679-687. doi: 10.1099/ijsem.0.003200. Epub 2019 Jan 16.


Interactions between Bacteriophage, Bacteria, and the Mammalian Immune System.

Van Belleghem JD, Dąbrowska K, Vaneechoutte M, Barr JJ, Bollyky PL.

Viruses. 2018 Dec 25;11(1). pii: E10. doi: 10.3390/v11010010. Review.


Gut microbiota dynamics and uraemic toxins: one size does not fit all.

Joossens M, Faust K, Gryp T, Nguyen ATL, Wang J, Eloot S, Schepers E, Dhondt A, Pletinck A, Vieira-Silva S, Falony G, Vaneechoutte M, Vanholder R, Van Biesen W, Huys GRB, Raes J, Glorieux G.

Gut. 2019 Dec;68(12):2257-2260. doi: 10.1136/gutjnl-2018-317561. Epub 2018 Nov 21. No abstract available.


Urogenital pathogens, associated with Trichomonas vaginalis, among pregnant women in Kilifi, Kenya: a nested case-control study.

Masha SC, Cools P, Descheemaeker P, Reynders M, Sanders EJ, Vaneechoutte M.

BMC Infect Dis. 2018 Nov 6;18(1):549. doi: 10.1186/s12879-018-3455-4.


Ultra-fast, sensitive and quantitative on-chip detection of group B streptococci in clinical samples.

Cai Q, Fauvart M, Wiederkehr RS, Jones B, Cools P, Goos P, Vaneechoutte M, Stakenborg T.

Talanta. 2019 Jan 15;192:220-225. doi: 10.1016/j.talanta.2018.09.041. Epub 2018 Sep 13.


Trichomonas vaginalis and HIV infection acquisition: a systematic review and meta-analysis.

Masha SC, Cools P, Sanders EJ, Vaneechoutte M, Crucitti T.

Sex Transm Infect. 2019 Feb;95(1):36-42. doi: 10.1136/sextrans-2018-053713. Epub 2018 Oct 19.


Chronic rhinosinusitis with nasal polyps is characterized by dysbacteriosis of the nasal microbiota.

Chalermwatanachai T, Vilchez-Vargas R, Holtappels G, Lacoere T, Jáuregui R, Kerckhof FM, Pieper DH, Van de Wiele T, Vaneechoutte M, Van Zele T, Bachert C.

Sci Rep. 2018 May 21;8(1):7926. doi: 10.1038/s41598-018-26327-2.


Establishing the diagnosis of chronic colonization with Pseudomonas aeruginosa of cystic fibrosis patients: Comparison of the European consensus criteria with genotyping of P. aeruginosa isolates.

Jonckheere L, Schelstraete P, Van Simaey L, Van Braeckel E, Willekens J, Van Daele S, De Baets F, Vaneechoutte M.

J Cyst Fibros. 2018 Nov;17(6):729-735. doi: 10.1016/j.jcf.2018.03.004. Epub 2018 Apr 11.


Staphylococcus aureus controls interleukin-5 release in upper airway inflammation.

Bachert C, Holtappels G, Merabishvili M, Meyer T, Murr A, Zhang N, Van Crombruggen K, Gevaert E, Völker U, Bröker BM, Vaneechoutte M, Schmidt F.

J Proteomics. 2018 May 30;180:53-60. doi: 10.1016/j.jprot.2017.12.003. Epub 2017 Dec 13.


Molecular typing of Trichomonas vaginalis isolates by actin gene sequence analysis and carriage of T. vaginalis viruses.

Masha SC, Cools P, Crucitti T, Sanders EJ, Vaneechoutte M.

Parasit Vectors. 2017 Oct 30;10(1):537. doi: 10.1186/s13071-017-2496-7.


Role of HIV exposure and infection in relation to neonatal GBS disease and rectovaginal GBS carriage: a systematic review and meta-analysis.

Cools P, van de Wijgert JHHM, Jespers V, Crucitti T, Sanders EJ, Verstraelen H, Vaneechoutte M.

Sci Rep. 2017 Oct 23;7(1):13820. doi: 10.1038/s41598-017-13218-1.


Development and validation of an LC tandem MS assay for the quantification of β-lactam antibiotics in the sputum of cystic fibrosis patients.

Forier K, Van Heck V, Carlier M, Van Braeckel E, Van Daele S, De Baets F, Schelstraete P, Haerynck F, Stove V, Van Simaey L, Vaneechoutte M, Verstraete AG.

J Antimicrob Chemother. 2018 Jan 1;73(1):95-101. doi: 10.1093/jac/dkx331.


Lactobacillus iners, the unusual suspect.

Vaneechoutte M.

Res Microbiol. 2017 Nov - Dec;168(9-10):826-836. doi: 10.1016/j.resmic.2017.09.003. Epub 2017 Sep 22.


The human vaginal microbial community.

Vaneechoutte M.

Res Microbiol. 2017 Nov - Dec;168(9-10):811-825. doi: 10.1016/j.resmic.2017.08.001. Epub 2017 Aug 26. Review.


Pro- and anti-inflammatory responses of peripheral blood mononuclear cells induced by Staphylococcus aureus and Pseudomonas aeruginosa phages.

Van Belleghem JD, Clement F, Merabishvili M, Lavigne R, Vaneechoutte M.

Sci Rep. 2017 Aug 14;7(1):8004. doi: 10.1038/s41598-017-08336-9.


Stability of bacteriophages in burn wound care products.

Merabishvili M, Monserez R, van Belleghem J, Rose T, Jennes S, De Vos D, Verbeken G, Vaneechoutte M, Pirnay JP.

PLoS One. 2017 Jul 27;12(7):e0182121. doi: 10.1371/journal.pone.0182121. eCollection 2017.


Polymicrobial infections and biofilms in women's health: Gahro Expert Group Meeting Report.

Cerca N, Vaneechoutte M, Guschin A, Swidsinski A.

Res Microbiol. 2017 Nov - Dec;168(9-10):902-904. doi: 10.1016/j.resmic.2017.07.002. Epub 2017 Jul 14. No abstract available.


Influence of chronic azithromycin treatment on the composition of the oropharyngeal microbial community in patients with severe asthma.

Lopes Dos Santos Santiago G, Brusselle G, Dauwe K, Deschaght P, Verhofstede C, Vaneechoutte D, Deschepper E, Jordens P, Joos G, Vaneechoutte M.

BMC Microbiol. 2017 May 10;17(1):109. doi: 10.1186/s12866-017-1022-6.


Women with symptoms of a urinary tract infection but a negative urine culture: PCR-based quantification of Escherichia coli suggests infection in most cases.

Heytens S, De Sutter A, Coorevits L, Cools P, Boelens J, Van Simaey L, Christiaens T, Vaneechoutte M, Claeys G.

Clin Microbiol Infect. 2017 Sep;23(9):647-652. doi: 10.1016/j.cmi.2017.04.004. Epub 2017 Apr 28.


High prevalence of curable sexually transmitted infections among pregnant women in a rural county hospital in Kilifi, Kenya.

Masha SC, Wahome E, Vaneechoutte M, Cools P, Crucitti T, Sanders EJ.

PLoS One. 2017 Mar 31;12(3):e0175166. doi: 10.1371/journal.pone.0175166. eCollection 2017.


The presence of the putative Gardnerella vaginalis sialidase A gene in vaginal specimens is associated with bacterial vaginosis biofilm.

Hardy L, Jespers V, Van den Bulck M, Buyze J, Mwambarangwe L, Musengamana V, Vaneechoutte M, Crucitti T.

PLoS One. 2017 Feb 27;12(2):e0172522. doi: 10.1371/journal.pone.0172522. eCollection 2017.


Bacterial biofilms in the vagina.

Hardy L, Cerca N, Jespers V, Vaneechoutte M, Crucitti T.

Res Microbiol. 2017 Nov - Dec;168(9-10):865-874. doi: 10.1016/j.resmic.2017.02.001. Epub 2017 Feb 21. Review.


p-Cresyl Sulfate.

Gryp T, Vanholder R, Vaneechoutte M, Glorieux G.

Toxins (Basel). 2017 Jan 29;9(2). pii: E52. doi: 10.3390/toxins9020052. Review.


Effects of Propidium Monoazide (PMA) Treatment on Mycobiome and Bacteriome Analysis of Cystic Fibrosis Airways during Exacerbation.

Nguyen LD, Deschaght P, Merlin S, Loywick A, Audebert C, Van Daele S, Viscogliosi E, Vaneechoutte M, Delhaes L.

PLoS One. 2016 Dec 28;11(12):e0168860. doi: 10.1371/journal.pone.0168860. eCollection 2016.


Lactobacillus iners: Friend or Foe?

Petrova MI, Reid G, Vaneechoutte M, Lebeer S.

Trends Microbiol. 2017 Mar;25(3):182-191. doi: 10.1016/j.tim.2016.11.007. Epub 2016 Dec 1. Review.


A comparative study of different strategies for removal of endotoxins from bacteriophage preparations.

Van Belleghem JD, Merabishvili M, Vergauwen B, Lavigne R, Vaneechoutte M.

J Microbiol Methods. 2017 Jan;132:153-159. doi: 10.1016/j.mimet.2016.11.020. Epub 2016 Nov 29.


Epidemic Achromobacter xylosoxidans strain among Belgian cystic fibrosis patients and review of literature.

Cools P, Ho E, Vranckx K, Schelstraete P, Wurth B, Franckx H, Ieven G, Van Simaey L, Van Daele S, Verhulst S, De Baets F, Vaneechoutte M.

BMC Microbiol. 2016 Jun 24;16(1):122. doi: 10.1186/s12866-016-0736-1. Review.


Molecular Epidemiology and Clinical Impact of Acinetobacter calcoaceticus-baumannii Complex in a Belgian Burn Wound Center.

De Vos D, Pirnay JP, Bilocq F, Jennes S, Verbeken G, Rose T, Keersebilck E, Bosmans P, Pieters T, Hing M, Heuninckx W, De Pauw F, Soentjens P, Merabishvili M, Deschaght P, Vaneechoutte M, Bogaerts P, Glupczynski Y, Pot B, van der Reijden TJ, Dijkshoorn L.

PLoS One. 2016 May 25;11(5):e0156237. doi: 10.1371/journal.pone.0156237. eCollection 2016.


A fruitful alliance: the synergy between Atopobium vaginae and Gardnerella vaginalis in bacterial vaginosis-associated biofilm.

Hardy L, Jespers V, Abdellati S, De Baetselier I, Mwambarangwe L, Musengamana V, van de Wijgert J, Vaneechoutte M, Crucitti T.

Sex Transm Infect. 2016 Nov;92(7):487-491. doi: 10.1136/sextrans-2015-052475. Epub 2016 Mar 10.


Haemophilus influenzae biofilm formation in chronic otitis media with effusion.

Van Hoecke H, De Paepe AS, Lambert E, Van Belleghem JD, Cools P, Van Simaey L, Deschaght P, Vaneechoutte M, Dhooge I.

Eur Arch Otorhinolaryngol. 2016 Nov;273(11):3553-3560. Epub 2016 Mar 5.


Genomic and phenotypic characterization of the species Acinetobacter venetianus.

Fondi M, Maida I, Perrin E, Orlandini V, La Torre L, Bosi E, Negroni A, Zanaroli G, Fava F, Decorosi F, Giovannetti L, Viti C, Vaneechoutte M, Dijkshoorn L, Fani R.

Sci Rep. 2016 Feb 23;6:21985. doi: 10.1038/srep21985.


A Multi-Country Cross-Sectional Study of Vaginal Carriage of Group B Streptococci (GBS) and Escherichia coli in Resource-Poor Settings: Prevalences and Risk Factors.

Cools P, Jespers V, Hardy L, Crucitti T, Delany-Moretlwe S, Mwaura M, Ndayisaba GF, van de Wijgert JH, Vaneechoutte M.

PLoS One. 2016 Jan 26;11(1):e0148052. doi: 10.1371/journal.pone.0148052. eCollection 2016.


Gardnerella vaginalis Subgroups Defined by cpn60 Sequencing and Sialidase Activity in Isolates from Canada, Belgium and Kenya.

Schellenberg JJ, Paramel Jayaprakash T, Withana Gamage N, Patterson MH, Vaneechoutte M, Hill JE.

PLoS One. 2016 Jan 11;11(1):e0146510. doi: 10.1371/journal.pone.0146510. eCollection 2016.


A bacteriophage journey at the European Medicines Agency.

Debarbieux L, Pirnay JP, Verbeken G, De Vos D, Merabishvili M, Huys I, Patey O, Schoonjans D, Vaneechoutte M, Zizi M, Rohde C.

FEMS Microbiol Lett. 2016 Jan;363(2):fnv225. doi: 10.1093/femsle/fnv225. Epub 2015 Dec 10. No abstract available.


A DNA tool for early detection of vaginal dysbiosis in African women.

Jespers V, Crucitti T, van de Wijgert J, Vaneechoutte M, Delany-Moretlwe S, Mwaura M, Agabe S, Menten J.

Res Microbiol. 2016 Feb-Mar;167(2):133-41. doi: 10.1016/j.resmic.2015.10.006. Epub 2015 Nov 11.


Correction: Validation of High Resolution Melting Analysis (HRM) of the Amplified ITS2 Region for the Detection and Identification of Yeasts from Clinical Samples: Comparison with Culture and MALDI-TOF Based Identification.

Duyvejonck H, Cools P, Decruyenaere J, Roelens K, Noens L, Vermeulen S, Claeys G, Decat E, Van Mechelen E, Vaneechoutte M.

PLoS One. 2015 Sep 25;10(9):e0139501. doi: 10.1371/journal.pone.0139501. eCollection 2015. No abstract available.


Unravelling the Bacterial Vaginosis-Associated Biofilm: A Multiplex Gardnerella vaginalis and Atopobium vaginae Fluorescence In Situ Hybridization Assay Using Peptide Nucleic Acid Probes.

Hardy L, Jespers V, Dahchour N, Mwambarangwe L, Musengamana V, Vaneechoutte M, Crucitti T.

PLoS One. 2015 Aug 25;10(8):e0136658. doi: 10.1371/journal.pone.0136658. eCollection 2015.


Validation of High Resolution Melting Analysis (HRM) of the Amplified ITS2 Region for the Detection and Identification of Yeasts from Clinical Samples: Comparison with Culture and MALDI-TOF Based Identification.

Duyvejonck H, Cools P, Decruyenaere J, Roelens K, Noens L, Vermeulen S, Claeys G, Decat E, Van Mechelen E, Vaneechoutte M.

PLoS One. 2015 Aug 21;10(8):e0132149. doi: 10.1371/journal.pone.0132149. eCollection 2015. Erratum in: PLoS One. 2015;10(9):e0139501.


Genomes analysis and bacteria identification: The use of overlapping genes as molecular markers.

Perrin E, Fondi M, Maida I, Mengoni A, Chiellini C, Mocali S, Cocchi P, Campana S, Taccetti G, Vaneechoutte M, Fani R.

J Microbiol Methods. 2015 Oct;117:108-12. doi: 10.1016/j.mimet.2015.07.025. Epub 2015 Jul 30.


Quality and safety requirements for sustainable phage therapy products.

Pirnay JP, Blasdel BG, Bretaudeau L, Buckling A, Chanishvili N, Clark JR, Corte-Real S, Debarbieux L, Dublanchet A, De Vos D, Gabard J, Garcia M, Goderdzishvili M, Górski A, Hardcastle J, Huys I, Kutter E, Lavigne R, Merabishvili M, Olchawa E, Parikka KJ, Patey O, Pouilot F, Resch G, Rohde C, Scheres J, Skurnik M, Vaneechoutte M, Van Parys L, Verbeken G, Zizi M, Van den Eede G.

Pharm Res. 2015 Jul;32(7):2173-9. doi: 10.1007/s11095-014-1617-7. Epub 2015 Jan 14.


Draft Genome Sequence of Lactobacillus plantarum CMPG5300, a Human Vaginal Isolate.

Malik S, Siezen RJ, Renckens B, Vaneechoutte M, Vanderleyden J, Lebeer S.

Genome Announc. 2014 Nov 13;2(6). pii: e01149-14. doi: 10.1128/genomeA.01149-14.

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