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Items: 10

1.

Neofunctionalization of Mitochondrial Proteins and Incorporation into Signaling Networks in Plants.

Lama S, Broda M, Abbas Z, Vaneechoutte D, Belt K, Säll T, Vandepoele K, Van Aken O.

Mol Biol Evol. 2019 May 1;36(5):974-989. doi: 10.1093/molbev/msz031.

2.

Curse: building expression atlases and co-expression networks from public RNA-Seq data.

Vaneechoutte D, Vandepoele K.

Bioinformatics. 2019 Aug 15;35(16):2880-2881. doi: 10.1093/bioinformatics/bty1052.

PMID:
30590391
3.

TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information.

Kulkarni SR, Vaneechoutte D, Van de Velde J, Vandepoele K.

Nucleic Acids Res. 2018 Apr 6;46(6):e31. doi: 10.1093/nar/gkx1279.

4.

Genome-wide characterization of differential transcript usage in Arabidopsis thaliana.

Vaneechoutte D, Estrada AR, Lin YC, Loraine AE, Vandepoele K.

Plant J. 2017 Dec;92(6):1218-1231. doi: 10.1111/tpj.13746. Epub 2017 Nov 20.

5.

Longitudinal sequencing of HIV-1 infected patients with low-level viremia for years while on ART shows no indications for genetic evolution of the virus.

Vancoillie L, Hebberecht L, Dauwe K, Demecheleer E, Dinakis S, Vaneechoutte D, Mortier V, Verhofstede C.

Virology. 2017 Oct;510:185-193. doi: 10.1016/j.virol.2017.07.010. Epub 2017 Jul 24.

6.

Influence of chronic azithromycin treatment on the composition of the oropharyngeal microbial community in patients with severe asthma.

Lopes Dos Santos Santiago G, Brusselle G, Dauwe K, Deschaght P, Verhofstede C, Vaneechoutte D, Deschepper E, Jordens P, Joos G, Vaneechoutte M.

BMC Microbiol. 2017 May 10;17(1):109. doi: 10.1186/s12866-017-1022-6.

7.

The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a.

Zhang X, Ivanova A, Vandepoele K, Radomiljac J, Van de Velde J, Berkowitz O, Willems P, Xu Y, Ng S, Van Aken O, Duncan O, Zhang B, Storme V, Chan KX, Vaneechoutte D, Pogson BJ, Van Breusegem F, Whelan J, De Clercq I.

Plant Physiol. 2017 Mar;173(3):1824-1843. doi: 10.1104/pp.16.01494. Epub 2017 Feb 6.

8.

A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants.

Van de Velde J, Van Bel M, Vaneechoutte D, Vandepoele K.

Plant Physiol. 2016 Aug;171(4):2586-98. doi: 10.1104/pp.16.00821. Epub 2016 Jun 3.

9.

Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways.

Vargas L, Santa Brígida AB, Mota Filho JP, de Carvalho TG, Rojas CA, Vaneechoutte D, Van Bel M, Farrinelli L, Ferreira PC, Vandepoele K, Hemerly AS.

PLoS One. 2014 Dec 9;9(12):e114744. doi: 10.1371/journal.pone.0114744. eCollection 2014.

10.

PLAZA 3.0: an access point for plant comparative genomics.

Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K.

Nucleic Acids Res. 2015 Jan;43(Database issue):D974-81. doi: 10.1093/nar/gku986. Epub 2014 Oct 16.

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