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Items: 10


Reading the Epitranscriptome: New Techniques and Perspectives.

Vandivier LE, Gregory BD.

Enzymes. 2017;41:269-298. doi: 10.1016/bs.enz.2017.03.004. Epub 2017 Apr 14.


In Silico Identification of RNA Modifications from High-Throughput Sequencing Data Using HAMR.

Kuksa PP, Leung YY, Vandivier LE, Anderson Z, Gregory BD, Wang LS.

Methods Mol Biol. 2017;1562:211-229. doi: 10.1007/978-1-4939-6807-7_14.


The Conservation and Function of RNA Secondary Structure in Plants.

Vandivier LE, Anderson SJ, Foley SW, Gregory BD.

Annu Rev Plant Biol. 2016 Apr 29;67:463-88. doi: 10.1146/annurev-arplant-043015-111754. Epub 2016 Feb 8. Review.


Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis.

Vandivier LE, Campos R, Kuksa PP, Silverman IM, Wang LS, Gregory BD.

Plant Cell. 2015 Nov;27(11):3024-37. doi: 10.1105/tpc.15.00591. Epub 2015 Nov 11.


Transcriptome-wide measurement of plant RNA secondary structure.

Foley SW, Vandivier LE, Kuksa PP, Gregory BD.

Curr Opin Plant Biol. 2015 Oct;27:36-43. doi: 10.1016/j.pbi.2015.05.021. Epub 2015 Jun 26. Review.


High-throughput nuclease-mediated probing of RNA secondary structure in plant transcriptomes.

Vandivier LE, Li F, Gregory BD.

Methods Mol Biol. 2015;1284:41-70. doi: 10.1007/978-1-4939-2444-8_3.


Essential Role for endogenous siRNAs during meiosis in mouse oocytes.

Stein P, Rozhkov NV, Li F, Cárdenas FL, Davydenko O, Vandivier LE, Gregory BD, Hannon GJ, Schultz RM.

PLoS Genet. 2015 Feb 19;11(2):e1005013. doi: 10.1371/journal.pgen.1005013. eCollection 2015 Feb. Erratum in: PLoS Genet. 2015 Apr;11(4):e1005129.


Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis.

Li S, Vandivier LE, Tu B, Gao L, Won SY, Li S, Zheng B, Gregory BD, Chen X.

Genome Res. 2015 Feb;25(2):235-45. doi: 10.1101/gr.182238.114. Epub 2014 Nov 20.


Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome.

Li F, Zheng Q, Vandivier LE, Willmann MR, Chen Y, Gregory BD.

Plant Cell. 2012 Nov;24(11):4346-59. doi: 10.1105/tpc.112.104232. Epub 2012 Nov 13.


Succession in the gut microbiome following antibiotic and antibody therapies for Clostridium difficile.

Peterfreund GL, Vandivier LE, Sinha R, Marozsan AJ, Olson WC, Zhu J, Bushman FD.

PLoS One. 2012;7(10):e46966. doi: 10.1371/journal.pone.0046966. Epub 2012 Oct 10.

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