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Items: 44

1.

Determinants of target prioritization and regulatory hierarchy for the bacterial small RNA SgrS.

Bobrovskyy M, Azam MS, Frandsen JK, Zhang J, Poddar A, Ma X, Henkin TM, Ha T, Vanderpool CK.

Mol Microbiol. 2019 Jul 24. doi: 10.1111/mmi.14355. [Epub ahead of print]

PMID:
31340077
2.

Bacterial Cyclopropane Fatty Acid Synthase mRNA Is Targeted by Activating and Repressing Small RNAs.

Bianco CM, Fröhlich KS, Vanderpool CK.

J Bacteriol. 2019 Sep 6;201(19). pii: e00461-19. doi: 10.1128/JB.00461-19. Print 2019 Oct 1.

3.

The Small RNA PinT Contributes to PhoP-Mediated Regulation of the Salmonella Pathogenicity Island 1 Type III Secretion System in Salmonella enterica Serovar Typhimurium.

Kim K, Palmer AD, Vanderpool CK, Slauch JM.

J Bacteriol. 2019 Sep 6;201(19). pii: e00312-19. doi: 10.1128/JB.00312-19. Print 2019 Oct 1.

PMID:
31262841
4.
5.

Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium.

Kim K, Golubeva YA, Vanderpool CK, Slauch JM.

Mol Microbiol. 2019 Mar;111(3):570-587. doi: 10.1111/mmi.14174. Epub 2018 Dec 12.

PMID:
30484918
6.

Dual-Function RNAs.

Raina M, King A, Bianco C, Vanderpool CK.

Microbiol Spectr. 2018 Sep;6(5). doi: 10.1128/microbiolspec.RWR-0032-2018. Review.

7.

Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism.

Azam MS, Vanderpool CK.

Nucleic Acids Res. 2018 Mar 16;46(5):2585-2599. doi: 10.1093/nar/gkx1286.

8.

The Small Protein SgrT Controls Transport Activity of the Glucose-Specific Phosphotransferase System.

Lloyd CR, Park S, Fei J, Vanderpool CK.

J Bacteriol. 2017 May 9;199(11). pii: e00869-16. doi: 10.1128/JB.00869-16. Print 2017 Jun 1.

9.

A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli.

Balasubramanian D, Ragunathan PT, Fei J, Vanderpool CK.

mSystems. 2016 Feb 9;1(1). pii: e00021-15. eCollection 2016 Jan-Feb.

10.

CRISPR-Cas Gatekeeper: Slow on the Uptake but Gets the Job Done.

Whitaker RJ, Vanderpool CK.

Cell Host Microbe. 2016 Feb 10;19(2):135-7. doi: 10.1016/j.chom.2016.01.015.

11.

Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress.

Bobrovskyy M, Vanderpool CK.

Mol Microbiol. 2016 Jan;99(2):254-73. doi: 10.1111/mmi.13230. Epub 2015 Oct 26.

12.

Small RNAs Regulate Primary and Secondary Metabolism in Gram-negative Bacteria.

Bobrovskyy M, Vanderpool CK, Richards GR.

Microbiol Spectr. 2015 Jun;3(3). doi: 10.1128/microbiolspec.MBP-0009-2014.

PMID:
26185078
13.

Target activation by regulatory RNAs in bacteria.

Papenfort K, Vanderpool CK.

FEMS Microbiol Rev. 2015 May;39(3):362-78. doi: 10.1093/femsre/fuv016. Epub 2015 Apr 30. Review.

14.

Talk among yourselves: RNA sponges mediate cross talk between functionally related messenger RNAs.

Azam MS, Vanderpool CK.

EMBO J. 2015 Jun 3;34(11):1436-8. doi: 10.15252/embj.201591492. Epub 2015 Apr 27. No abstract available.

15.

RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA.

Fei J, Singh D, Zhang Q, Park S, Balasubramanian D, Golding I, Vanderpool CK, Ha T.

Science. 2015 Mar 20;347(6228):1371-4. doi: 10.1126/science.1258849.

16.

The small RNA SgrS: roles in metabolism and pathogenesis of enteric bacteria.

Bobrovskyy M, Vanderpool CK.

Front Cell Infect Microbiol. 2014 May 8;4:61. doi: 10.3389/fcimb.2014.00061. eCollection 2014. Review.

17.

Regulation of bacterial metabolism by small RNAs using diverse mechanisms.

Bobrovskyy M, Vanderpool CK.

Annu Rev Genet. 2013;47:209-32. doi: 10.1146/annurev-genet-111212-133445. Epub 2013 Aug 30. Review.

PMID:
24016191
18.

Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coli.

Richards GR, Patel MV, Lloyd CR, Vanderpool CK.

J Bacteriol. 2013 Nov;195(21):4816-25. doi: 10.1128/JB.00705-13. Epub 2013 Aug 30.

19.

Deciphering the interplay between two independent functions of the small RNA regulator SgrS in Salmonella.

Balasubramanian D, Vanderpool CK.

J Bacteriol. 2013 Oct;195(20):4620-30. doi: 10.1128/JB.00586-13. Epub 2013 Aug 9.

20.

Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli.

Sun Y, Vanderpool CK.

J Bacteriol. 2013 Nov;195(21):4804-15. doi: 10.1128/JB.00722-13. Epub 2013 Jul 19.

21.

Computational analysis of bacterial RNA-Seq data.

McClure R, Balasubramanian D, Sun Y, Bobrovskyy M, Sumby P, Genco CA, Vanderpool CK, Tjaden B.

Nucleic Acids Res. 2013 Aug;41(14):e140. doi: 10.1093/nar/gkt444. Epub 2013 May 28.

22.

Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis.

Papenfort K, Sun Y, Miyakoshi M, Vanderpool CK, Vogel J.

Cell. 2013 Apr 11;153(2):426-37. doi: 10.1016/j.cell.2013.03.003.

23.

New developments in post-transcriptional regulation of operons by small RNAs.

Balasubramanian D, Vanderpool CK.

RNA Biol. 2013 Mar;10(3):337-41. doi: 10.4161/rna.23696. Epub 2013 Feb 7.

24.

Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA.

Rice JB, Balasubramanian D, Vanderpool CK.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):E2691-8. doi: 10.1073/pnas.1207927109. Epub 2012 Sep 17.

25.
26.

Molecular call and response: the physiology of bacterial small RNAs.

Richards GR, Vanderpool CK.

Biochim Biophys Acta. 2011 Oct;1809(10):525-31. doi: 10.1016/j.bbagrm.2011.07.013. Epub 2011 Aug 6. Review.

27.

Dual-function RNA regulators in bacteria.

Vanderpool CK, Balasubramanian D, Lloyd CR.

Biochimie. 2011 Nov;93(11):1943-9. doi: 10.1016/j.biochi.2011.07.016. Epub 2011 Jul 24. Review.

28.

Combined experimental and computational strategies define an expansive regulon for GcvB small RNA.

Vanderpool CK.

Mol Microbiol. 2011 Sep;81(5):1129-32. doi: 10.1111/j.1365-2958.2011.07780.x. Epub 2011 Aug 4.

29.

The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes.

Rice JB, Vanderpool CK.

Nucleic Acids Res. 2011 May;39(9):3806-19. doi: 10.1093/nar/gkq1219. Epub 2011 Jan 17.

30.

Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress.

Sun Y, Vanderpool CK.

J Bacteriol. 2011 Jan;193(1):143-53. doi: 10.1128/JB.01008-10. Epub 2010 Oct 22.

31.

Characterization of homologs of the small RNA SgrS reveals diversity in function.

Wadler CS, Vanderpool CK.

Nucleic Acids Res. 2009 Sep;37(16):5477-85. doi: 10.1093/nar/gkp591. Epub 2009 Jul 20.

32.

Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence.

Horler RS, Vanderpool CK.

Nucleic Acids Res. 2009 Sep;37(16):5465-76. doi: 10.1093/nar/gkp501. Epub 2009 Jun 16.

33.

A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide.

Wadler CS, Vanderpool CK.

Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20454-9. Epub 2007 Nov 27.

34.

Physiological consequences of small RNA-mediated regulation of glucose-phosphate stress.

Vanderpool CK.

Curr Opin Microbiol. 2007 Apr;10(2):146-51. Epub 2007 Mar 23. Review.

PMID:
17383224
35.

Small RNA regulators and the bacterial response to stress.

Gottesman S, McCullen CA, Guillier M, Vanderpool CK, Majdalani N, Benhammou J, Thompson KM, FitzGerald PC, Sowa NA, FitzGerald DJ.

Cold Spring Harb Symp Quant Biol. 2006;71:1-11. Review.

36.

The novel transcription factor SgrR coordinates the response to glucose-phosphate stress.

Vanderpool CK, Gottesman S.

J Bacteriol. 2007 Mar;189(6):2238-48. Epub 2007 Jan 5.

37.

Heme transport contributes to in vivo fitness of Bordetella pertussis during primary infection in mice.

Brickman TJ, Vanderpool CK, Armstrong SK.

Infect Immun. 2006 Mar;74(3):1741-4.

38.

Effect of RyhB small RNA on global iron use in Escherichia coli.

Massé E, Vanderpool CK, Gottesman S.

J Bacteriol. 2005 Oct;187(20):6962-71.

39.

Bacterial small RNA regulators.

Majdalani N, Vanderpool CK, Gottesman S.

Crit Rev Biochem Mol Biol. 2005 Mar-Apr;40(2):93-113. Review.

PMID:
15814430
40.

Noncoding RNAs at the membrane.

Vanderpool CK, Gottesman S.

Nat Struct Mol Biol. 2005 Apr;12(4):285-6. No abstract available.

PMID:
15809646
42.
43.

Heme-responsive transcriptional activation of Bordetella bhu genes.

Vanderpool CK, Armstrong SK.

J Bacteriol. 2003 Feb;185(3):909-17.

44.

The Bordetella bhu locus is required for heme iron utilization.

Vanderpool CK, Armstrong SK.

J Bacteriol. 2001 Jul;183(14):4278-87.

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