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Items: 11

1.

Survey of allele specific expression in bovine muscle.

Guillocheau GM, El Hou A, Meersseman C, Esquerré D, Rebours E, Letaief R, Simao M, Hypolite N, Bourneuf E, Bruneau N, Vaiman A, Vander Jagt CJ, Chamberlain AJ, Rocha D.

Sci Rep. 2019 Mar 12;9(1):4297. doi: 10.1038/s41598-019-40781-6.

2.

Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle.

Khansefid M, Pryce JE, Bolormaa S, Chen Y, Millen CA, Chamberlain AJ, Vander Jagt CJ, Goddard ME.

BMC Genomics. 2018 Nov 3;19(1):793. doi: 10.1186/s12864-018-5181-0.

3.

Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation.

Yurchenko AA, Daetwyler HD, Yudin N, Schnabel RD, Vander Jagt CJ, Soloshenko V, Lhasaranov B, Popov R, Taylor JF, Larkin DM.

Sci Rep. 2018 Aug 28;8(1):12984. doi: 10.1038/s41598-018-31304-w.

4.

Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues.

Xiang R, Hayes BJ, Vander Jagt CJ, MacLeod IM, Khansefid M, Bowman PJ, Yuan Z, Prowse-Wilkins CP, Reich CM, Mason BA, Garner JB, Marett LC, Chen Y, Bolormaa S, Daetwyler HD, Chamberlain AJ, Goddard ME.

BMC Genomics. 2018 Jul 4;19(1):521. doi: 10.1186/s12864-018-4902-8.

5.

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits.

Wang M, Hancock TP, Chamberlain AJ, Vander Jagt CJ, Pryce JE, Cocks BG, Goddard ME, Hayes BJ.

BMC Genomics. 2018 May 24;19(1):395. doi: 10.1186/s12864-018-4800-0.

6.

Gene expression analysis of blood, liver, and muscle in cattle divergently selected for high and low residual feed intake.

Khansefid M, Millen CA, Chen Y, Pryce JE, Chamberlain AJ, Vander Jagt CJ, Gondro C, Goddard ME.

J Anim Sci. 2017 Nov;95(11):4764-4775. doi: 10.2527/jas2016.1320.

7.

Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits.

MacLeod IM, Bowman PJ, Vander Jagt CJ, Haile-Mariam M, Kemper KE, Chamberlain AJ, Schrooten C, Hayes BJ, Goddard ME.

BMC Genomics. 2016 Feb 27;17:144. doi: 10.1186/s12864-016-2443-6.

8.

Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle.

Raven LA, Cocks BG, Kemper KE, Chamberlain AJ, Vander Jagt CJ, Goddard ME, Hayes BJ.

Mamm Genome. 2016 Feb;27(1-2):81-97. doi: 10.1007/s00335-015-9613-8. Epub 2015 Nov 27.

PMID:
26613780
9.

Extensive variation between tissues in allele specific expression in an outbred mammal.

Chamberlain AJ, Vander Jagt CJ, Hayes BJ, Khansefid M, Marett LC, Millen CA, Nguyen TT, Goddard ME.

BMC Genomics. 2015 Nov 23;16:993. doi: 10.1186/s12864-015-2174-0.

10.

Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions.

Kemper KE, Reich CM, Bowman PJ, Vander Jagt CJ, Chamberlain AJ, Mason BA, Hayes BJ, Goddard ME.

Genet Sel Evol. 2015 Apr 17;47:29. doi: 10.1186/s12711-014-0074-4.

11.

Gene expression in the mammary gland of the tammar wallaby during the lactation cycle reveals conserved mechanisms regulating mammalian lactation.

Vander Jagt CJ, Whitley JC, Cocks BG, Goddard ME.

Reprod Fertil Dev. 2015 Feb 23. doi: 10.1071/RD14210. [Epub ahead of print]

PMID:
25701950

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