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Items: 1 to 50 of 122

1.

Pinpointing a potential role for CLEC12B in cancer predisposition through familial exome sequencing.

Derpoorter C, Vandepoele K, Diez-Fraile A, Vandemeulebroecke K, De Wilde B, Speleman F, Van Roy N, Lammens T, Laureys G.

Pediatr Blood Cancer. 2018 Oct 23:e27513. doi: 10.1002/pbc.27513. [Epub ahead of print]

PMID:
30350915
2.

Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne).

Veeckman E, Van Glabeke S, Haegeman A, Muylle H, van Parijs FRD, Byrne SL, Asp T, Studer B, Rohde A, Roldán-Ruiz I, Vandepoele K, Ruttink T.

DNA Res. 2018 Oct 15. doi: 10.1093/dnares/dsy033. [Epub ahead of print]

PMID:
30325414
3.

The NF1 hotspot in acute myeloid leukemia: what's in a name?

Vandepoele K, Van der Meulen J, Denys B.

Leukemia. 2018 Oct 1. doi: 10.1038/s41375-018-0266-y. [Epub ahead of print] No abstract available.

PMID:
30275525
4.

Insights into the Evolution of Multicellularity from the Sea Lettuce Genome.

De Clerck O, Kao SM, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J, Califano G, Charrier B, Clewes R, Del Cortona A, D'Hondt S, Fernandez-Pozo N, Gachon CM, Hanikenne M, Lattermann L, Leliaert F, Liu X, Maggs CA, Popper ZA, Raven JA, Van Bel M, Wilhelmsson PKI, Bhattacharya D, Coates JC, Rensing SA, Van Der Straeten D, Vardi A, Sterck L, Vandepoele K, Van de Peer Y, Wichard T, Bothwell JH.

Curr Biol. 2018 Sep 24;28(18):2921-2933.e5. doi: 10.1016/j.cub.2018.08.015. Epub 2018 Sep 13.

PMID:
30220504
5.

Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage.

Krasovec M, Vancaester E, Rombauts S, Bucchini F, Yau S, Hemon C, Lebredonchel H, Grimsley N, Moreau H, Sanchez-Brosseau S, Vandepoele K, Piganeau G.

Genome Biol Evol. 2018 Sep 1;10(9):2347-2365. doi: 10.1093/gbe/evy167.

6.

A case of chronic eosinophilic leukemia with secondary transformation to acute myeloid leukemia.

Hofmans M, Delie A, Vandepoele K, Van Roy N, Van der Meulen J, Philippé J, Moors I.

Leuk Res Rep. 2018 Apr 9;9:45-47. doi: 10.1016/j.lrr.2018.04.001. eCollection 2018.

7.

KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis.

Gao Z, Daneva A, Salanenka Y, Van Durme M, Huysmans M, Lin Z, De Winter F, Vanneste S, Karimi M, Van de Velde J, Vandepoele K, Van de Walle D, Dewettinck K, Lambrecht BN, Nowack MK.

Nat Plants. 2018 Jun;4(6):365-375. doi: 10.1038/s41477-018-0160-7. Epub 2018 May 28.

PMID:
29808023
8.

Understanding genetic control of root system architecture in soybean: Insights into the genetic basis of lateral root number.

Prince SJ, Valliyodan B, Ye H, Yang M, Tai S, Hu W, Murphy M, Durnell LA, Song L, Joshi T, Liu Y, Van de Velde J, Vandepoele K, Grover Shannon J, Nguyen HT.

Plant Cell Environ. 2018 May 10. doi: 10.1111/pce.13333. [Epub ahead of print]

PMID:
29749073
9.

GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants.

Besbrugge N, Van Leene J, Eeckhout D, Cannoot B, Kulkarni SR, De Winne N, Persiau G, Van De Slijke E, Bontinck M, Aesaert S, Impens F, Gevaert K, Van Damme D, Van Lijsebettens M, Inzé D, Vandepoele K, Nelissen H, De Jaeger G.

Plant Physiol. 2018 Jun;177(2):447-464. doi: 10.1104/pp.18.00175. Epub 2018 Apr 20.

10.

RNA-based FLT3-ITD allelic ratio is associated with outcome and ex vivo response to FLT3 inhibitors in pediatric AML.

Cucchi DGJ, Denys B, Kaspers GJL, Janssen JJWM, Ossenkoppele GJ, de Haas V, Zwaan CM, van den Heuvel-Eibrink MM, Philippé J, Csikós T, Kwidama Z, de Moerloose B, de Bont ESJM, Lissenberg-Witte BI, Zweegman S, Verwer F, Vandepoele K, Schuurhuis GJ, Sonneveld E, Cloos J.

Blood. 2018 May 31;131(22):2485-2489. doi: 10.1182/blood-2017-12-819508. Epub 2018 Apr 18.

PMID:
29669779
11.

Author Correction: The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.

Ritter A, Iñigo S, Fernández-Calvo P, Heyndrickx KS, Dhondt S, Shi H, De Milde L, Bossche RV, De Clercq R, Eeckhout D, Ron M, Somers DE, Inzé D, Gevaert K, De Jaeger G, Vandepoele K, Pauwels L, Goossens A.

Nat Commun. 2018 Apr 10;9:16213. doi: 10.1038/ncomms16213.

12.

TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information.

Kulkarni SR, Vaneechoutte D, Van de Velde J, Vandepoele K.

Nucleic Acids Res. 2018 Apr 6;46(6):e31. doi: 10.1093/nar/gkx1279.

13.

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA.

Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.

PMID:
29237241
14.

Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana.

Hansen BO, Meyer EH, Ferrari C, Vaid N, Movahedi S, Vandepoele K, Nikoloski Z, Mutwil M.

New Phytol. 2018 Mar;217(4):1521-1534. doi: 10.1111/nph.14921. Epub 2017 Dec 4.

PMID:
29205376
15.

The Plastid Genome in Cladophorales Green Algae Is Encoded by Hairpin Chromosomes.

Del Cortona A, Leliaert F, Bogaert KA, Turmel M, Boedeker C, Janouškovec J, Lopez-Bautista JM, Verbruggen H, Vandepoele K, De Clerck O.

Curr Biol. 2017 Dec 18;27(24):3771-3782.e6. doi: 10.1016/j.cub.2017.11.004. Epub 2017 Nov 30.

PMID:
29199074
16.

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.

Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1284. doi: 10.1093/nar/gkx1188. No abstract available.

17.

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.

Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D260-D266. doi: 10.1093/nar/gkx1126.

18.

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics.

Van Bel M, Diels T, Vancaester E, Kreft L, Botzki A, Van de Peer Y, Coppens F, Vandepoele K.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1190-D1196. doi: 10.1093/nar/gkx1002.

19.

Genome-wide characterization of differential transcript usage in Arabidopsis thaliana.

Vaneechoutte D, Estrada AR, Lin YC, Loraine AE, Vandepoele K.

Plant J. 2017 Dec;92(6):1218-1231. doi: 10.1111/tpj.13746. Epub 2017 Nov 20.

PMID:
29031026
20.

Cancer-related mRNA expression analysis using a novel flow cytometry-based assay.

Depreter B, Philippé J, Meul M, Denys B, Vandepoele K, De Moerloose B, Lammens T.

Cytometry B Clin Cytom. 2018 Jul;94(4):565-575. doi: 10.1002/cyto.b.21593. Epub 2017 Nov 2. Review.

PMID:
28980766
21.

Gearing up to handle the mosaic nature of life in the quest for orthologs.

Forslund K, Pereira C, Capella-Gutierrez S, Sousa da Silva A, Altenhoff A, Huerta-Cepas J, Muffato M, Patricio M, Vandepoele K, Ebersberger I, Blake J, Fernández Breis JT; Quest for Orthologs Consortium, Boeckmann B, Gabaldón T, Sonnhammer E, Dessimoz C, Lewis S.

Bioinformatics. 2017 Aug 30. doi: 10.1093/bioinformatics/btx542. [Epub ahead of print]

22.

Whole blood Fe isotopic signature in a sub-Saharan African population.

Cikomola JC, Flórez MR, Costas-Rodríguez M, Anoshkina Y, Vandepoele K, Katchunga PB, Kishabongo AS, Speeckaert MM, Vanhaecke F, Delanghe JR.

Metallomics. 2017 Aug 16;9(8):1142-1149. doi: 10.1039/c7mt00170c.

PMID:
28737806
23.

Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa).

De Schutter K, Tsaneva M, Kulkarni SR, Rougé P, Vandepoele K, Van Damme EJM.

Rice (N Y). 2017 Dec;10(1):26. doi: 10.1186/s12284-017-0164-3. Epub 2017 May 30.

24.

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization.

Kreft L, Botzki A, Coppens F, Vandepoele K, Van Bel M.

Bioinformatics. 2017 Sep 15;33(18):2946-2947. doi: 10.1093/bioinformatics/btx324.

PMID:
28525531
25.

The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.

Ritter A, Iñigo S, Fernández-Calvo P, Heyndrickx KS, Dhondt S, Shi H, De Milde L, Vanden Bossche R, De Clercq R, Eeckhout D, Ron M, Somers DE, Inzé D, Gevaert K, De Jaeger G, Vandepoele K, Pauwels L, Goossens A.

Nat Commun. 2017 May 11;8:15235. doi: 10.1038/ncomms15235. Erratum in: Nat Commun. 2018 Apr 10;9:16213.

26.

The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a.

Zhang X, Ivanova A, Vandepoele K, Radomiljac J, Van de Velde J, Berkowitz O, Willems P, Xu Y, Ng S, Van Aken O, Duncan O, Zhang B, Storme V, Chan KX, Vaneechoutte D, Pogson BJ, Van Breusegem F, Whelan J, De Clercq I.

Plant Physiol. 2017 Mar;173(3):1824-1843. doi: 10.1104/pp.16.01494. Epub 2017 Feb 6.

27.

Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules.

Ruprecht C, Proost S, Hernandez-Coronado M, Ortiz-Ramirez C, Lang D, Rensing SA, Becker JD, Vandepoele K, Mutwil M.

Plant J. 2017 May;90(3):447-465. doi: 10.1111/tpj.13502. Epub 2017 Mar 23.

28.

A Guide to the PLAZA 3.0 Plant Comparative Genomic Database.

Vandepoele K.

Methods Mol Biol. 2017;1533:183-200.

PMID:
27987171
29.

The mutation nrpb1-A325V in the largest subunit of RNA polymerase II suppresses compromised growth of Arabidopsis plants deficient in a function of the general transcription factor IIF.

Babiychuk E, Hoang KT, Vandepoele K, Van De Slijke E, Geelen D, De Jaeger G, Obokata J, Kushnir S.

Plant J. 2017 Feb;89(4):730-745. doi: 10.1111/tpj.13417. Epub 2017 Feb 10.

30.

Protocadherin-1 Localization and Cell-Adhesion Function in Airway Epithelial Cells in Asthma.

Faura Tellez G, Willemse BW, Brouwer U, Nijboer-Brinksma S, Vandepoele K, Noordhoek JA, Heijink I, de Vries M, Smithers NP, Postma DS, Timens W, Wiffen L, van Roy F, Holloway JW, Lackie PM, Nawijn MC, Koppelman GH.

PLoS One. 2016 Oct 4;11(10):e0163967. doi: 10.1371/journal.pone.0163967. eCollection 2016.

31.

Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development.

Van Leene J, Blomme J, Kulkarni SR, Cannoot B, De Winne N, Eeckhout D, Persiau G, Van De Slijke E, Vercruysse L, Vanden Bossche R, Heyndrickx KS, Vanneste S, Goossens A, Gevaert K, Vandepoele K, Gonzalez N, Inzé D, De Jaeger G.

J Exp Bot. 2016 Oct;67(19):5825-5840. Epub 2016 Sep 22.

32.

Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences.

Veeckman E, Ruttink T, Vandepoele K.

Plant Cell. 2016 Aug;28(8):1759-68. doi: 10.1105/tpc.16.00349. Epub 2016 Aug 10.

33.

The association between fructosamine-3 kinase 900C/G polymorphism, transferrin polymorphism and human herpesvirus-8 infection in diabetics living in South Kivu.

Cikomola JC, Vandepoele K, Katchunga PB, Kishabongo AS, Padalko EY, Speeckaert MM, Delanghe JR.

Acta Trop. 2016 Nov;163:14-9. doi: 10.1016/j.actatropica.2016.07.011. Epub 2016 Jul 25.

PMID:
27461879
34.

A novel approach for BCR-ABL1 standardization to improve International Scale estimation.

Maes B, Bakkus M, Boeckx N, Boone E, Cauwelier B, Denys B, De Schouwer P, Devos T, El Housni H, Hillen F, Jacobs K, Lambert F, Louagie H, Maes MB, Meeus P, Moreau E, Nollet F, Peeters K, Saussoy P, Van Lint P, Vaerman JL, Vaeyens F, Vandepoele K, Vannuffel P, Ver Elst K, Vermeulen K, Bruyndonckx R; Belgian working group on BCR-ABL1 IS standardization.

Int J Lab Hematol. 2016 Dec;38(6):674-684. doi: 10.1111/ijlh.12556. Epub 2016 Jul 27.

PMID:
27460189
35.

A simple colorimetric assay for measuring fructosamine 3 kinase activity.

Cikomola JC, Kishabongo AS, Vandepoele K, Mulder M, Katchunga PB, Laukens B, Schie LV, Grootaert H, Callewaert N, Speeckaert MM, Delanghe JR.

Clin Chem Lab Med. 2017 Jan 1;55(1):154-159. doi: 10.1515/cclm-2016-0441.

PMID:
27394048
36.

A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants.

Van de Velde J, Van Bel M, Vaneechoutte D, Vandepoele K.

Plant Physiol. 2016 Aug;171(4):2586-98. doi: 10.1104/pp.16.00821. Epub 2016 Jun 3.

37.

CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool.

Tzfadia O, Diels T, De Meyer S, Vandepoele K, Aharoni A, Van de Peer Y.

Front Plant Sci. 2016 Jan 5;6:1194. doi: 10.3389/fpls.2015.01194. eCollection 2015.

38.

The YPEL5-PPP1CB fusion transcript is detected in different hematological malignancies and in normal samples.

Vandepoele K, Philippé J, Denys B.

Leuk Res Rep. 2015 Aug 6;4(2):51-4. doi: 10.1016/j.lrr.2015.07.001. eCollection 2015.

39.

Functional Analysis of the Arabidopsis TETRASPANIN Gene Family in Plant Growth and Development.

Wang F, Muto A, Van de Velde J, Neyt P, Himanen K, Vandepoele K, Van Lijsebettens M.

Plant Physiol. 2015 Nov;169(3):2200-14. doi: 10.1104/pp.15.01310. Epub 2015 Sep 28.

40.

Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B.

Glover NM, Daron J, Pingault L, Vandepoele K, Paux E, Feuillet C, Choulet F.

Genome Biol. 2015 Sep 9;16:188. doi: 10.1186/s13059-015-0754-6.

41.

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.

De Witte D, Van de Velde J, Decap D, Van Bel M, Audenaert P, Demeester P, Dhoedt B, Vandepoele K, Fostier J.

Bioinformatics. 2015 Dec 1;31(23):3758-66. doi: 10.1093/bioinformatics/btv466. Epub 2015 Aug 8.

42.

A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis.

Gonzalez N, Pauwels L, Baekelandt A, De Milde L, Van Leene J, Besbrugge N, Heyndrickx KS, Cuéllar Pérez A, Durand AN, De Clercq R, Van De Slijke E, Vanden Bossche R, Eeckhout D, Gevaert K, Vandepoele K, De Jaeger G, Goossens A, Inzé D.

Plant Cell. 2015 Aug;27(8):2273-87. doi: 10.1105/tpc.15.00006. Epub 2015 Jul 31. Erratum in: Plant Cell. 2016 Mar;28(3):824.

43.

Protocadherin-1 binds to SMAD3 and suppresses TGF-β1-induced gene transcription.

Faura Tellez G, Vandepoele K, Brouwer U, Koning H, Elderman RM, Hackett TL, Willemse BW, Holloway J, Van Roy F, Koppelman GH, Nawijn MC.

Am J Physiol Lung Cell Mol Physiol. 2015 Oct 1;309(7):L725-35. doi: 10.1152/ajplung.00346.2014. Epub 2015 Jul 24.

44.

Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes.

Verkest A, Byzova M, Martens C, Willems P, Verwulgen T, Slabbinck B, Rombaut D, Van de Velde J, Vandepoele K, Standaert E, Peeters M, Van Lijsebettens M, Van Breusegem F, De Block M.

Plant Physiol. 2015 Aug;168(4):1338-50. doi: 10.1104/pp.15.00155. Epub 2015 Jun 16.

45.

Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf.

Nelissen H, Eeckhout D, Demuynck K, Persiau G, Walton A, van Bel M, Vervoort M, Candaele J, De Block J, Aesaert S, Van Lijsebettens M, Goormachtig S, Vandepoele K, Van Leene J, Muszynski M, Gevaert K, Inzé D, De Jaeger G.

Plant Cell. 2015 Jun;27(6):1605-19. doi: 10.1105/tpc.15.00269. Epub 2015 Jun 2.

46.

NBPF1, a tumor suppressor candidate in neuroblastoma, exerts growth inhibitory effects by inducing a G1 cell cycle arrest.

Andries V, Vandepoele K, Staes K, Berx G, Bogaert P, Van Isterdael G, Ginneberge D, Parthoens E, Vandenbussche J, Gevaert K, van Roy F.

BMC Cancer. 2015 May 10;15:391. doi: 10.1186/s12885-015-1408-5.

47.

Evolutionary trails of plant steroid genes.

Vriet C, Lemmens K, Vandepoele K, Reuzeau C, Russinova E.

Trends Plant Sci. 2015 May;20(5):301-308. doi: 10.1016/j.tplants.2015.03.006. Epub 2015 Apr 8. Review.

PMID:
25861757
48.

An update on LNCipedia: a database for annotated human lncRNA sequences.

Volders PJ, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P.

Nucleic Acids Res. 2015 Apr 30;43(8):4363-4. doi: 10.1093/nar/gkv295. Epub 2015 Mar 31. No abstract available.

49.

An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes.

Van Leene J, Eeckhout D, Cannoot B, De Winne N, Persiau G, Van De Slijke E, Vercruysse L, Dedecker M, Verkest A, Vandepoele K, Martens L, Witters E, Gevaert K, De Jaeger G.

Nat Protoc. 2015 Jan;10(1):169-87. doi: 10.1038/nprot.2014.199. Epub 2014 Dec 18.

PMID:
25521792
50.

Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways.

Vargas L, Santa Brígida AB, Mota Filho JP, de Carvalho TG, Rojas CA, Vaneechoutte D, Van Bel M, Farrinelli L, Ferreira PC, Vandepoele K, Hemerly AS.

PLoS One. 2014 Dec 9;9(12):e114744. doi: 10.1371/journal.pone.0114744. eCollection 2014.

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