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Discussion points for Bayesian inference.

Aczel B, Hoekstra R, Gelman A, Wagenmakers EJ, Klugkist IG, Rouder JN, Vandekerckhove J, Lee MD, Morey RD, Vanpaemel W, Dienes Z, van Ravenzwaaij D.

Nat Hum Behav. 2020 Jan 27. doi: 10.1038/s41562-019-0807-z. [Epub ahead of print] No abstract available.


XPO1 regulates erythroid differentiation and is a new target for the treatment of β-thalassemia.

Guillem F, Dussiot M, Colin E, Suriyun T, Arlet JB, Goudin N, Marcion G, Seigneuric R, Causse S, Gonin P, Gastou M, Deloger M, Rossignol J, Lamarque M, Bellaid Choucair Z, Gautier EF, Ducamp S, Vandekerckhove J, Moura IC, Maciel TT, Garrido C, An X, Mayeux P, Mohandas N, Courtois G, Hermine O.

Haematologica. 2019 Nov 21. pii: haematol.2018.210054. doi: 10.3324/haematol.2018.210054. [Epub ahead of print]


A new evolutionary model for the vertebrate actin family including two novel groups.

Witjes L, Van Troys M, Vandekerckhove J, Vandepoele K, Ampe C.

Mol Phylogenet Evol. 2019 Dec;141:106632. doi: 10.1016/j.ympev.2019.106632. Epub 2019 Sep 24.


The latency of a visual evoked potential tracks the onset of decision making.

Nunez MD, Gosai A, Vandekerckhove J, Srinivasan R.

Neuroimage. 2019 Aug 15;197:93-108. doi: 10.1016/j.neuroimage.2019.04.052. Epub 2019 Apr 24.


Actin Post-translational Modifications: The Cinderella of Cytoskeletal Control.

Varland S, Vandekerckhove J, Drazic A.

Trends Biochem Sci. 2019 Jun;44(6):502-516. doi: 10.1016/j.tibs.2018.11.010. Epub 2019 Jan 2. Review.


Metastudies for robust tests of theory.

Baribault B, Donkin C, Little DR, Trueblood JS, Oravecz Z, van Ravenzwaaij D, White CN, De Boeck P, Vandekerckhove J.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2607-2612. doi: 10.1073/pnas.1708285114. Epub 2018 Mar 12.


The Quality of Response Time Data Inference: A Blinded, Collaborative Assessment of the Validity of Cognitive Models.

Dutilh G, Annis J, Brown SD, Cassey P, Evans NJ, Grasman RPPP, Hawkins GE, Heathcote A, Holmes WR, Krypotos AM, Kupitz CN, Leite FP, Lerche V, Lin YS, Logan GD, Palmeri TJ, Starns JJ, Trueblood JS, van Maanen L, van Ravenzwaaij D, Vandekerckhove J, Visser I, Voss A, White CN, Wiecki TV, Rieskamp J, Donkin C.

Psychon Bull Rev. 2019 Aug;26(4):1051-1069. doi: 10.3758/s13423-017-1417-2.


Editorial: Bayesian methods for advancing psychological science.

Vandekerckhove J, Rouder JN, Kruschke JK.

Psychon Bull Rev. 2018 Feb;25(1):1-4. doi: 10.3758/s13423-018-1443-8. No abstract available.


Bayesian inference for psychology, part IV: parameter estimation and Bayes factors.

Rouder JN, Haaf JM, Vandekerckhove J.

Psychon Bull Rev. 2018 Feb;25(1):102-113. doi: 10.3758/s13423-017-1420-7.


Bayesian inference for psychology, part III: Parameter estimation in nonstandard models.

Matzke D, Boehm U, Vandekerckhove J.

Psychon Bull Rev. 2018 Feb;25(1):77-101. doi: 10.3758/s13423-017-1394-5.


How attention influences perceptual decision making: Single-trial EEG correlates of drift-diffusion model parameters.

Nunez MD, Vandekerckhove J, Srinivasan R.

J Math Psychol. 2017 Feb;76(Pt B):117-130. doi: 10.1016/ Epub 2016 Apr 11.


Introduction to Bayesian Inference for Psychology.

Etz A, Vandekerckhove J.

Psychon Bull Rev. 2018 Feb;25(1):5-34. doi: 10.3758/s13423-017-1262-3.


Modeling when people quit: Bayesian censored geometric models with hierarchical and latent-mixture extensions.

Okada K, Vandekerckhove J, Lee MD.

Behav Res Methods. 2018 Feb;50(1):406-415. doi: 10.3758/s13428-017-0879-5.


A test of the diffusion model explanation for the worst performance rule using preregistration and blinding.

Dutilh G, Vandekerckhove J, Ly A, Matzke D, Pedroni A, Frey R, Rieskamp J, Wagenmakers EJ.

Atten Percept Psychophys. 2017 Apr;79(3):713-725. doi: 10.3758/s13414-017-1304-y.


Poor stimulus discriminability as a common neuropsychological deficit between ADHD and reading ability in young children: a moderated mediation model.

Lúcio PS, Salum GA, Rohde LA, Swardfager W, Gadelha A, Vandekerckhove J, Pan PM, Polanczyk GV, do Rosário MC, Jackowski AP, Mari JJ, Cogo-Moreira H.

Psychol Med. 2017 Jan;47(2):255-266. doi: 10.1017/S0033291716002531. Epub 2016 Oct 4.


The EZ diffusion model provides a powerful test of simple empirical effects.

van Ravenzwaaij D, Donkin C, Vandekerckhove J.

Psychon Bull Rev. 2017 Apr;24(2):547-556. doi: 10.3758/s13423-016-1081-y.


Do People Agree on What Makes One Feel Loved? A Cognitive Psychometric Approach to the Consensus on Felt Love.

Oravecz Z, Muth C, Vandekerckhove J.

PLoS One. 2016 Apr 1;11(4):e0152803. doi: 10.1371/journal.pone.0152803. eCollection 2016.


A Bayesian Perspective on the Reproducibility Project: Psychology.

Etz A, Vandekerckhove J.

PLoS One. 2016 Feb 26;11(2):e0149794. doi: 10.1371/journal.pone.0149794. eCollection 2016.


Bayesian Data Analysis with the Bivariate Hierarchical Ornstein-Uhlenbeck Process Model.

Oravecz Z, Tuerlinckx F, Vandekerckhove J.

Multivariate Behav Res. 2016;51(1):106-19. doi: 10.1080/00273171.2015.1110512.


Meta-analyses are no substitute for registered replications: a skeptical perspective on religious priming.

van Elk M, Matzke D, Gronau QF, Guan M, Vandekerckhove J, Wagenmakers EJ.

Front Psychol. 2015 Sep 15;6:1365. doi: 10.3389/fpsyg.2015.01365. eCollection 2015.


A Bayesian approach to mitigation of publication bias.

Guan M, Vandekerckhove J.

Psychon Bull Rev. 2016 Feb;23(1):74-86. doi: 10.3758/s13423-015-0868-6.


Individual differences in attention influence perceptual decision making.

Nunez MD, Srinivasan R, Vandekerckhove J.

Front Psychol. 2015 Feb 5;8:18. doi: 10.3389/fpsyg.2015.00018. eCollection 2015.


Time-varying boundaries for diffusion models of decision making and response time.

Zhang S, Lee MD, Vandekerckhove J, Maris G, Wagenmakers EJ.

Front Psychol. 2014 Dec 9;5:1364. doi: 10.3389/fpsyg.2014.01364. eCollection 2014.


Pupil-linked arousal determines variability in perceptual decision making.

Murphy PR, Vandekerckhove J, Nieuwenhuis S.

PLoS Comput Biol. 2014 Sep 18;10(9):e1003854. doi: 10.1371/journal.pcbi.1003854. eCollection 2014 Sep.


Influence of prior information on pain involves biased perceptual decision-making.

Wiech K, Vandekerckhove J, Zaman J, Tuerlinckx F, Vlaeyen JW, Tracey I.

Curr Biol. 2014 Aug 4;24(15):R679-81. doi: 10.1016/j.cub.2014.06.022.


Mechanisms underpinning inattention and hyperactivity: neurocognitive support for ADHD dimensionality.

Salum GA, Sonuga-Barke E, Sergeant J, Vandekerckhove J, Gadelha A, Moriyama TS, Graeff-Martins AS, Manfro GG, Polanczyk G, Rohde LA.

Psychol Med. 2014 Nov;44(15):3189-201. doi: 10.1017/S0033291714000919. Epub 2014 Apr 25.


Chaperone nanobodies protect gelsolin against MT1-MMP degradation and alleviate amyloid burden in the gelsolin amyloidosis mouse model.

Van Overbeke W, Verhelle A, Everaert I, Zwaenepoel O, Vandekerckhove J, Cuvelier C, Derave W, Gettemans J.

Mol Ther. 2014 Oct;22(10):1768-78. doi: 10.1038/mt.2014.132. Epub 2014 Jul 15.


Stratifying fascin and cortactin function in invadopodium formation using inhibitory nanobodies and targeted subcellular delocalization.

Van Audenhove I, Boucherie C, Pieters L, Zwaenepoel O, Vanloo B, Martens E, Verbrugge C, Hassanzadeh-Ghassabeh G, Vandekerckhove J, Cornelissen M, De Ganck A, Gettemans J.

FASEB J. 2014 Apr;28(4):1805-18. doi: 10.1096/fj.13-242537. Epub 2014 Jan 10.


A nanobody targeting the F-actin capping protein CapG restrains breast cancer metastasis.

Van Impe K, Bethuyne J, Cool S, Impens F, Ruano-Gallego D, De Wever O, Vanloo B, Van Troys M, Lambein K, Boucherie C, Martens E, Zwaenepoel O, Hassanzadeh-Ghassabeh G, Vandekerckhove J, Gevaert K, Fernández LÁ, Sanders NN, Gettemans J.

Breast Cancer Res. 2013 Dec 13;15(6):R116. doi: 10.1186/bcr3585.


Mechanism of cleavage of alpha-synuclein by the 20S proteasome and modulation of its degradation by the RedOx state of the N-terminal methionines.

Alvarez-Castelao B, Goethals M, Vandekerckhove J, Castaño JG.

Biochim Biophys Acta. 2014 Feb;1843(2):352-65. doi: 10.1016/j.bbamcr.2013.11.018. Epub 2013 Dec 3.


L-plastin nanobodies perturb matrix degradation, podosome formation, stability and lifetime in THP-1 macrophages.

De Clercq S, Boucherie C, Vandekerckhove J, Gettemans J, Guillabert A.

PLoS One. 2013 Nov 13;8(11):e78108. doi: 10.1371/journal.pone.0078108. eCollection 2013.


Extending JAGS: a tutorial on adding custom distributions to JAGS (with a diffusion model example).

Wabersich D, Vandekerckhove J.

Behav Res Methods. 2014 Mar;46(1):15-28. doi: 10.3758/s13428-013-0369-3.


SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping.

Betancourt LH, De Bock PJ, Staes A, Timmerman E, Perez-Riverol Y, Sanchez A, Besada V, Gonzalez LJ, Vandekerckhove J, Gevaert K.

J Proteomics. 2013 Oct 8;91:164-71. doi: 10.1016/j.jprot.2013.06.033. Epub 2013 Jul 11.


Specificity of basic information processing and inhibitory control in attention deficit hyperactivity disorder.

Salum GA, Sergeant J, Sonuga-Barke E, Vandekerckhove J, Gadelha A, Pan PM, Moriyama TS, Graeff-Martins AS, de Alvarenga PG, do Rosário MC, Manfro GG, Polanczyk G, Rohde LA.

Psychol Med. 2014 Feb;44(3):617-31. doi: 10.1017/S0033291713000639. Epub 2013 Apr 8.


A diffusion model account of the relationship between the emotional flanker task and rumination and depression.

Pe ML, Vandekerckhove J, Kuppens P.

Emotion. 2013 Aug;13(4):739-47. doi: 10.1037/a0031628. Epub 2013 Mar 25.


The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events.

Colaert N, Maddelein D, Impens F, Van Damme P, Plasman K, Helsens K, Hulstaert N, Vandekerckhove J, Gevaert K, Martens L.

Nucleic Acids Res. 2013 Jan;41(Database issue):D333-7. doi: 10.1093/nar/gks998. Epub 2012 Oct 23.


Nanobody-induced perturbation of LFA-1/L-plastin phosphorylation impairs MTOC docking, immune synapse formation and T cell activation.

De Clercq S, Zwaenepoel O, Martens E, Vandekerckhove J, Guillabert A, Gettemans J.

Cell Mol Life Sci. 2013 Mar;70(5):909-22. doi: 10.1007/s00018-012-1169-0. Epub 2012 Sep 23.


A diffusion model account of age differences in posterror slowing.

Dutilh G, Forstmann BU, Vandekerckhove J, Wagenmakers EJ.

Psychol Aging. 2013 Mar;28(1):64-76. doi: 10.1037/a0029875. Epub 2012 Sep 3.


A catalogue of putative HIV-1 protease host cell substrates.

Impens F, Timmerman E, Staes A, Moens K, Ariën KK, Verhasselt B, Vandekerckhove J, Gevaert K.

Biol Chem. 2012 Sep;393(9):915-31. doi: 10.1515/hsz-2012-0168.


Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity.

Tondeleir D, Lambrechts A, Müller M, Jonckheere V, Doll T, Vandamme D, Bakkali K, Waterschoot D, Lemaistre M, Debeir O, Decaestecker C, Hinz B, Staes A, Timmerman E, Colaert N, Gevaert K, Vandekerckhove J, Ampe C.

Mol Cell Proteomics. 2012 Aug;11(8):255-71. doi: 10.1074/mcp.M111.015099. Epub 2012 Mar 22.


How many spots with missing values can be tolerated in quantitative two-dimensional gel electrophoresis when applying univariate statistics?

Zellner M, Graf A, Zehetmayer S, Winkler W, Staes A, Gevaert K, Vandekerckhove J, Marchetti-Deschmann M, Miller I, Bauer P, Allmaier G, Oehler R.

J Proteomics. 2012 Mar 16;75(6):1792-802. doi: 10.1016/j.jprot.2011.12.019. Epub 2011 Dec 30.


Reduced protein stability of human DJ-1/PARK7 L166P, linked to autosomal recessive Parkinson disease, is due to direct endoproteolytic cleavage by the proteasome.

Alvarez-Castelao B, Muñoz C, Sánchez I, Goethals M, Vandekerckhove J, Castaño JG.

Biochim Biophys Acta. 2012 Feb;1823(2):524-33. doi: 10.1016/j.bbamcr.2011.11.010. Epub 2011 Dec 8.


Defective nuclear localization of Hsp70 is associated with dyserythropoiesis and GATA-1 cleavage in myelodysplastic syndromes.

Frisan E, Vandekerckhove J, de Thonel A, Pierre-Eugène C, Sternberg A, Arlet JB, Floquet C, Gyan E, Kosmider O, Dreyfus F, Gabet AS, Courtois G, Vyas P, Ribeil JA, Zermati Y, Lacombe C, Mayeux P, Solary E, Garrido C, Hermine O, Fontenay M.

Blood. 2012 Feb 9;119(6):1532-42. doi: 10.1182/blood-2011-03-343475. Epub 2011 Dec 12.


Testing theories of post-error slowing.

Dutilh G, Vandekerckhove J, Forstmann BU, Keuleers E, Brysbaert M, Wagenmakers EJ.

Atten Percept Psychophys. 2012 Feb;74(2):454-65. doi: 10.3758/s13414-011-0243-2.


Polymeric IgA1 controls erythroblast proliferation and accelerates erythropoiesis recovery in anemia.

Coulon S, Dussiot M, Grapton D, Maciel TT, Wang PH, Callens C, Tiwari MK, Agarwal S, Fricot A, Vandekerckhove J, Tamouza H, Zermati Y, Ribeil JA, Djedaini K, Oruc Z, Pascal V, Courtois G, Arnulf B, Alyanakian MA, Mayeux P, Leanderson T, Benhamou M, Cogné M, Monteiro RC, Hermine O, Moura IC.

Nat Med. 2011 Oct 23;17(11):1456-65. doi: 10.1038/nm.2462.


Cdk1 and BRCA1 target γ-tubulin to microtubule domains.

Hubert T, Vandekerckhove J, Gettemans J.

Biochem Biophys Res Commun. 2011 Oct 14;414(1):240-5. doi: 10.1016/j.bbrc.2011.09.064. Epub 2011 Sep 17.


A hierarchical latent stochastic differential equation model for affective dynamics.

Oravecz Z, Tuerlinckx F, Vandekerckhove J.

Psychol Methods. 2011 Dec;16(4):468-90. doi: 10.1037/a0024375. Epub 2011 Aug 8.


Selecting protein N-terminal peptides by combined fractional diagonal chromatography.

Staes A, Impens F, Van Damme P, Ruttens B, Goethals M, Demol H, Timmerman E, Vandekerckhove J, Gevaert K.

Nat Protoc. 2011 Jul 14;6(8):1130-41. doi: 10.1038/nprot.2011.355.


NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation.

Van Damme P, Hole K, Pimenta-Marques A, Helsens K, Vandekerckhove J, Martinho RG, Gevaert K, Arnesen T.

PLoS Genet. 2011 Jul;7(7):e1002169. doi: 10.1371/journal.pgen.1002169. Epub 2011 Jul 7.


The chlorosome of Chlorobaculum tepidum: size, mass and protein composition revealed by electron microscopy, dynamic light scattering and mass spectrometry-driven proteomics.

Kouyianou K, De Bock PJ, Müller SA, Nikolaki A, Rizos A, Krzyžánek V, Aktoudianaki A, Vandekerckhove J, Engel A, Gevaert K, Tsiotis G.

Proteomics. 2011 Jul;11(14):2867-80. doi: 10.1002/pmic.201000494. Epub 2011 Jun 17.


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