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MALDI-TOF MS profiling of non-starter lactic acid bacteria from artisanal cheeses of the Greek island of Naxos.

Gantzias C, Lappa IK, Aerts M, Georgalaki M, Manolopoulou E, Papadimitriou K, De Brandt E, Tsakalidou E, Vandamme P.

Int J Food Microbiol. 2020 Mar 9;323:108586. doi: 10.1016/j.ijfoodmicro.2020.108586. [Epub ahead of print]


Pectobacterium parvum sp. nov., having a Salmonella SPI-1-like Type III secretion system and low virulence.

Pasanen M, Waleron M, Schott T, Cleenwerck I, Misztak A, Waleron K, Pritchard L, Bakr R, Degefu Y, van der Wolf J, Vandamme P, Pirhonen M.

Int J Syst Evol Microbiol. 2020 Feb 20. doi: 10.1099/ijsem.0.004057. [Epub ahead of print]


The Buffer Capacity and Calcium Concentration of Water Influence the Microbial Species Diversity, Grain Growth, and Metabolite Production During Water Kefir Fermentation.

Laureys D, Aerts M, Vandamme P, De Vuyst L.

Front Microbiol. 2019 Dec 13;10:2876. doi: 10.3389/fmicb.2019.02876. eCollection 2019.


Impact of Sample Preservation and Manipulation on Insect Gut Microbiome Profiling. A Test Case With Fruit Flies (Diptera, Tephritidae).

De Cock M, Virgilio M, Vandamme P, Augustinos A, Bourtzis K, Willems A, De Meyer M.

Front Microbiol. 2019 Dec 13;10:2833. doi: 10.3389/fmicb.2019.02833. eCollection 2019.


PaSiT: A novel approach based on short oligo-nucleotide frequencies for efficient bacterial identification and typing.

Goussarov G, Cleenwerck I, Mysara M, Leys N, Monsieurs P, Tahon G, Carlier A, Vandamme P, Van Houdt R.

Bioinformatics. 2020 Jan 3. pii: btz964. doi: 10.1093/bioinformatics/btz964. [Epub ahead of print]


Comparative Genomics of Pandoraea, a Genus Enriched in Xenobiotic Biodegradation and Metabolism.

Peeters C, De Canck E, Cnockaert M, De Brandt E, Snauwaert C, Verheyde B, Depoorter E, Spilker T, LiPuma JJ, Vandamme P.

Front Microbiol. 2019 Nov 6;10:2556. doi: 10.3389/fmicb.2019.02556. eCollection 2019.


Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production.

Dumolin C, Peeters C, Ehsani E, Tahon G, De Canck E, Cnockaert M, Boon N, Vandamme P.

Int J Syst Evol Microbiol. 2020 Jan;70(1):530-536. doi: 10.1099/ijsem.0.003786.


Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption-Ionization Time of Flight Mass Spectrometry Data.

Dumolin C, Aerts M, Verheyde B, Schellaert S, Vandamme T, Van der Jeugt F, De Canck E, Cnockaert M, Wieme AD, Cleenwerck I, Peiren J, Dawyndt P, Vandamme P, Carlier A.

mSystems. 2019 Sep 10;4(5). pii: e00437-19. doi: 10.1128/mSystems.00437-19.


Enriched hydrogen-oxidizing microbiomes show a high diversity of co-existing hydrogen-oxidizing bacteria.

Ehsani E, Dumolin C, Arends JBA, Kerckhof FM, Hu X, Vandamme P, Boon N.

Appl Microbiol Biotechnol. 2019 Oct;103(19):8241-8253. doi: 10.1007/s00253-019-10082-z. Epub 2019 Sep 3.


Actinomadura roseirufa sp. nov., producer of semduramicin, a polyether ionophore.

Wieme AD, Gosselé F, Snauwaert C, Cleenwerck I, Vandamme P.

Int J Syst Evol Microbiol. 2019 Oct;69(10):3068-3073. doi: 10.1099/ijsem.0.003591. Epub 2019 Jul 16.


A Method for Comprehensive Proteomic Analysis of Human Faecal Samples to Investigate Gut Dysbiosis in Patients with Cystic Fibrosis.

Debyser G, Aerts M, Van Hecke P, Mesuere B, Duytschaever G, Dawyndt P, De Boeck K, Vandamme P, Devreese B.

Adv Exp Med Biol. 2019;1073:137-160. doi: 10.1007/978-3-030-12298-0_6.


Gene Expansion and Positive Selection as Bacterial Adaptations to Oligotrophic Conditions.

Props R, Monsieurs P, Vandamme P, Leys N, Denef VJ, Boon N.

mSphere. 2019 Feb 6;4(1). pii: e00011-19. doi: 10.1128/mSphereDirect.00011-19.


Wort Substrate Consumption and Metabolite Production During Lambic Beer Fermentation and Maturation Explain the Successive Growth of Specific Bacterial and Yeast Species.

De Roos J, Vandamme P, De Vuyst L.

Front Microbiol. 2018 Nov 19;9:2763. doi: 10.3389/fmicb.2018.02763. eCollection 2018.


Lactococci dominate the bacterial communities of fermented maize, sorghum and millet slurries in Zimbabwe.

Gabaza M, Joossens M, Cnockaert M, Muchuweti M, Raes K, Vandamme P.

Int J Food Microbiol. 2019 Jan 16;289:77-87. doi: 10.1016/j.ijfoodmicro.2018.09.001. Epub 2018 Sep 3.


Influence of microbiota in the susceptibility of parasitic wasps to abamectin insecticide: deep sequencing, esterase and toxicity tests.

Fernández MDM, Meeus I, Billiet A, Van Nieuwerburgh F, Deforce D, Vandamme P, Viñuela E, Smagghe G.

Pest Manag Sci. 2019 Jan;75(1):79-86. doi: 10.1002/ps.5195. Epub 2018 Oct 16.


A prokaryotic-eukaryotic relation in the fat body of Bombus terrestris.

Parmentier A, Billiet A, Smagghe G, Vandamme P, Deforce D, Van Nieuwerburgh F, Meeus I.

Environ Microbiol Rep. 2018 Dec;10(6):644-650. doi: 10.1111/1758-2229.12673. Epub 2018 Sep 9.


Filling the gaps in clinical proteomics: a do-it-yourself guide for the identification of the emerging pathogen Arcobacter by matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Van den Abeele AM, Vogelaers D, Vandamme P, Vanlaere E, Houf K.

J Microbiol Methods. 2018 Sep;152:92-97. doi: 10.1016/j.mimet.2018.07.007. Epub 2018 Jul 12.


Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov.

De Meyer SE, Cnockaert M, Moulin L, Howieson JG, Vandamme P.

Int J Syst Evol Microbiol. 2018 Aug;68(8):2607-2614. doi: 10.1099/ijsem.0.002884. Epub 2018 Jun 29.


In Vitro Susceptibility of Burkholderia cepacia Complex Isolated from Cystic Fibrosis Patients to Ceftazidime-Avibactam and Ceftolozane-Tazobactam.

Van Dalem A, Herpol M, Echahidi F, Peeters C, Wybo I, De Wachter E, Vandamme P, Piérard D.

Antimicrob Agents Chemother. 2018 Aug 27;62(9). pii: e00590-18. doi: 10.1128/AAC.00590-18. Print 2018 Sep.


Burkholderia insecticola sp. nov., a gut symbiotic bacterium of the bean bug Riptortus pedestris.

Takeshita K, Tamaki H, Ohbayashi T, Meng XY, Sone T, Mitani Y, Peeters C, Kikuchi Y, Vandamme P.

Int J Syst Evol Microbiol. 2018 Jul;68(7):2370-2374. doi: 10.1099/ijsem.0.002848. Epub 2018 Jun 4.


Oxygen and diverse nutrients influence the water kefir fermentation process.

Laureys D, Aerts M, Vandamme P, De Vuyst L.

Food Microbiol. 2018 Aug;73:351-361. doi: 10.1016/ Epub 2018 Feb 13.


Antimicrobial activity against Mycobacterium tuberculosis under in vitro lipid-rich dormancy conditions.

Aguilar-Ayala DA, Cnockaert M, Vandamme P, Palomino JC, Martin A, Gonzalez-Y-Merchand J.

J Med Microbiol. 2018 Mar;67(3):282-285. doi: 10.1099/jmm.0.000681. Epub 2018 Jan 15.


Iron and zinc bioaccessibility of fermented maize, sorghum and millets from five locations in Zimbabwe.

Gabaza M, Shumoy H, Muchuweti M, Vandamme P, Raes K.

Food Res Int. 2018 Jan;103:361-370. doi: 10.1016/j.foodres.2017.10.047. Epub 2017 Oct 29.


Temporal and Spatial Distribution of the Acetic Acid Bacterium Communities throughout the Wooden Casks Used for the Fermentation and Maturation of Lambic Beer Underlines Their Functional Role.

De Roos J, Verce M, Aerts M, Vandamme P, De Vuyst L.

Appl Environ Microbiol. 2018 Mar 19;84(7). pii: e02846-17. doi: 10.1128/AEM.02846-17. Print 2018 Apr 1.


Flow cytometric fingerprinting for microbial strain discrimination and physiological characterization.

Buysschaert B, Kerckhof FM, Vandamme P, De Baets B, Boon N.

Cytometry A. 2018 Feb;93(2):201-212. doi: 10.1002/cyto.a.23302. Epub 2017 Dec 20.


The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis.

Aguilar-Ayala DA, Tilleman L, Van Nieuwerburgh F, Deforce D, Palomino JC, Vandamme P, Gonzalez-Y-Merchand JA, Martin A.

Sci Rep. 2017 Dec 15;7(1):17665. doi: 10.1038/s41598-017-17751-x.


Halomonas nigrificans sp. nov., isolated from cheese.

Oguntoyinbo FA, Cnockaert M, Cho GS, Kabisch J, Neve H, Bockelmann W, Wenning M, Franz CMAP, Vandamme P.

Int J Syst Evol Microbiol. 2018 Jan;68(1):371-376. doi: 10.1099/ijsem.0.002515. Epub 2017 Dec 12.


Large-scale cultivation of the bumblebee gut microbiota reveals an underestimated bacterial species diversity capable of pathogen inhibition.

Praet J, Parmentier A, Schmid-Hempel R, Meeus I, Smagghe G, Vandamme P.

Environ Microbiol. 2018 Jan;20(1):214-227. doi: 10.1111/1462-2920.13973. Epub 2017 Dec 1.


Minimal standards for describing new species belonging to the families Campylobacteraceae and Helicobacteraceae: Campylobacter, Arcobacter, Helicobacter and Wolinella spp.

On SLW, Miller WG, Houf K, Fox JG, Vandamme P.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5296-5311. doi: 10.1099/ijsem.0.002255. Epub 2017 Oct 16.


Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia.

Vandamme P, Peeters C, De Smet B, Price EP, Sarovich DS, Henry DA, Hird TJ, Zlosnik JEA, Mayo M, Warner J, Baker A, Currie BJ, Carlier A.

Front Microbiol. 2017 Sep 6;8:1679. doi: 10.3389/fmicb.2017.01679. eCollection 2017.


Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium.

Vaz-Moreira I, Narciso-da-Rocha C, Lopes AR, Carvalho G, Lobo-da-Cunha A, Whitman WB, Snauwaert C, Vandamme P, Manaia CM, Nunes OC.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3752-3758. doi: 10.1099/ijsem.0.002184. Epub 2017 Sep 12.


Clinical and microbiological profile of chronic Burkholderia cepacia complex infections in a cystic fibrosis reference hospital in Brazil.

da Costa Capizzani CP, Caçador NC, Torres LAGMM, Tonani L, Vandamme P, da Costa Darini AL.

Eur J Clin Microbiol Infect Dis. 2017 Nov;36(11):2263-2271. doi: 10.1007/s10096-017-3058-9. Epub 2017 Aug 24.


Arcobacter haliotis sp. nov., isolated from abalone species Haliotis gigantea.

Tanaka R, Cleenwerck I, Mizutani Y, Iehata S, Bossier P, Vandamme P.

Int J Syst Evol Microbiol. 2017 Aug;67(8):3050-3056. doi: 10.1099/ijsem.0.002080. Epub 2017 Aug 18.


In vitro activity of bedaquiline against rapidly growing nontuberculous mycobacteria.

Aguilar-Ayala DA, Cnockaert M, André E, Andries K, Gonzalez-Y-Merchand JA, Vandamme P, Palomino JC, Martin A.

J Med Microbiol. 2017 Aug;66(8):1140-1143. doi: 10.1099/jmm.0.000537. Epub 2017 Jul 28.


Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater.

Simon L, Škraban J, Kyrpides NC, Woyke T, Shapiro N, Cleenwerck I, Vandamme P, Whitman WB, Trček J.

Antonie Van Leeuwenhoek. 2017 Sep;110(9):1189-1197. doi: 10.1007/s10482-017-0891-x. Epub 2017 May 29.


Characterization of Mycobacterium chelonae-Like Strains by Comparative Genomics.

Nogueira CL, de Almeida LGP, Menendez MC, Garcia MJ, Digiampietri LA, Chimara E, Cnockaert M, Palomino JC, Portaels F, Martin A, Vandamme P, Leão SC.

Front Microbiol. 2017 May 8;8:789. doi: 10.3389/fmicb.2017.00789. eCollection 2017.


Gilliamella intestini sp. nov., Gilliamella bombicola sp. nov., Gilliamella bombi sp. nov. and Gilliamella mensalis sp. nov.: Four novel Gilliamella species isolated from the bumblebee gut.

Praet J, Cnockaert M, Meeus I, Smagghe G, Vandamme P.

Syst Appl Microbiol. 2017 Jun;40(4):199-204. doi: 10.1016/j.syapm.2017.03.003. Epub 2017 Apr 12.


Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure.

Peeters C, Cooper VS, Hatcher PJ, Verheyde B, Carlier A, Vandamme P.

PLoS One. 2017 Apr 21;12(4):e0176191. doi: 10.1371/journal.pone.0176191. eCollection 2017.


Reconciliation between operational taxonomic units and species boundaries.

Mysara M, Vandamme P, Props R, Kerckhof FM, Leys N, Boon N, Raes J, Monsieurs P.

FEMS Microbiol Ecol. 2017 Apr 1;93(4). doi: 10.1093/femsec/fix029.


Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment.

Švec P, Králová S, Busse HJ, Kleinhagauer T, Pantůček R, Mašlaňová I, Cnockaert M, Vandamme P, Staňková E, Gelbíčová T, Holochová P, Barták M, Kýrová K, Sedláček I.

Int J Syst Evol Microbiol. 2017 May;67(5):1499-1507. doi: 10.1099/ijsem.0.001749. Epub 2017 May 22.


Optimizing of a protein extraction method for Mycobacterium tuberculosis proteome analysis using mass spectrometry.

Rabodoarivelo MS, Aerts M, Vandamme P, Palomino JC, Rasolofo V, Martin A.

J Microbiol Methods. 2016 Dec;131:144-147. doi: 10.1016/j.mimet.2016.10.021. Epub 2016 Oct 27.


Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis.

Carlier A, Cnockaert M, Fehr L, Vandamme P, Eberl L.

Syst Appl Microbiol. 2017 Jan;40(1):11-21. doi: 10.1016/j.syapm.2016.10.002. Epub 2016 Nov 24.


Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil.

Bournaud C, Moulin L, Cnockaert M, Faria S, Prin Y, Severac D, Vandamme P.

Int J Syst Evol Microbiol. 2017 Feb;67(2):432-440. doi: 10.1099/ijsem.0.001648. Epub 2017 Mar 16.


Aeromicrobium choanae sp. nov., an actinobacterium isolated from the choana of a garden warbler.

Ber P, Trappen SV, Vandamme P, Trček J.

Int J Syst Evol Microbiol. 2017 Feb;67(2):357-361. doi: 10.1099/ijsem.0.001632. Epub 2017 Feb 21.


Whole-Genome Sequence Analysis of Bombella intestini LMG 28161T, a Novel Acetic Acid Bacterium Isolated from the Crop of a Red-Tailed Bumble Bee, Bombus lapidarius.

Li L, Illeghems K, Van Kerrebroeck S, Borremans W, Cleenwerck I, Smagghe G, De Vuyst L, Vandamme P.

PLoS One. 2016 Nov 16;11(11):e0165611. doi: 10.1371/journal.pone.0165611. eCollection 2016.


Detection, isolation and characterization of Fusobacterium gastrosuis sp. nov. colonizing the stomach of pigs.

De Witte C, Flahou B, Ducatelle R, Smet A, De Bruyne E, Cnockaert M, Taminiau B, Daube G, Vandamme P, Haesebrouck F.

Syst Appl Microbiol. 2017 Jan;40(1):42-50. doi: 10.1016/j.syapm.2016.10.001. Epub 2016 Oct 24.


"Genetic regulation of Mycobacterium tuberculosis in a lipid-rich environment".

Aguilar-Ayala DA, Palomino JC, Vandamme P, Martin A, Gonzalez-Y-Merchand JA.

Infect Genet Evol. 2017 Nov;55:392-402. doi: 10.1016/j.meegid.2016.10.015. Epub 2016 Oct 19. Review.


Effect of Fermentation and Cooking on Soluble and Bound Phenolic Profiles of Finger Millet Sour Porridge.

Gabaza M, Shumoy H, Muchuweti M, Vandamme P, Raes K.

J Agric Food Chem. 2016 Oct 12;64(40):7615-7621. Epub 2016 Sep 28.


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