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Items: 1 to 50 of 102


Fast neutron-induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes.

Campbell BW, Hofstad AN, Sreekanta S, Fu F, Kono TJ, O'Rourke JA, Vance CP, Muehlbauer GJ, Stupar RM.

Theor Appl Genet. 2016 Sep;129(9):1725-38. doi: 10.1007/s00122-016-2735-x. Epub 2016 Jun 9.


Transgene silencing of sucrose synthase in alfalfa (Medicago sativa L.) stem vascular tissue suggests a role for invertase in cell wall cellulose synthesis.

Samac DA, Bucciarelli B, Miller SS, Yang SS, O'Rourke JA, Shin S, Vance CP.

BMC Plant Biol. 2015 Dec 1;15:283. doi: 10.1186/s12870-015-0649-4.


The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies.

O'Rourke JA, Fu F, Bucciarelli B, Yang SS, Samac DA, Lamb JF, Monteros MJ, Graham MA, Gronwald JW, Krom N, Li J, Dai X, Zhao PX, Vance CP.

BMC Genomics. 2015 Jul 7;16:502. doi: 10.1186/s12864-015-1718-7.


Biodegradation of atrazine by three transgenic grasses and alfalfa expressing a modified bacterial atrazine chlorohydrolase gene.

Vail AW, Wang P, Uefuji H, Samac DA, Vance CP, Wackett LP, Sadowsky MJ.

Transgenic Res. 2015 Jun;24(3):475-88. doi: 10.1007/s11248-014-9851-7. Epub 2014 Nov 29.


An RNA-Seq based gene expression atlas of the common bean.

O'Rourke JA, Iniguez LP, Fu F, Bucciarelli B, Miller SS, Jackson SA, McClean PE, Li J, Dai X, Zhao PX, Hernandez G, Vance CP.

BMC Genomics. 2014 Oct 6;15:866. doi: 10.1186/1471-2164-15-866.


Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean.

Bolon YT, Stec AO, Michno JM, Roessler J, Bhaskar PB, Ries L, Dobbels AA, Campbell BW, Young NP, Anderson JE, Grant DM, Orf JH, Naeve SL, Muehlbauer GJ, Vance CP, Stupar RM.

Genetics. 2014 Nov;198(3):967-81. doi: 10.1534/genetics.114.170340. Epub 2014 Sep 10.


Legume genomics: understanding biology through DNA and RNA sequencing.

O'Rourke JA, Bolon YT, Bucciarelli B, Vance CP.

Ann Bot. 2014 Jun;113(7):1107-20. doi: 10.1093/aob/mcu072. Epub 2014 Apr 25. Review.


Interactions between light intensity and phosphorus nutrition affect the phosphate-mining capacity of white lupin (Lupinus albus L.).

Cheng L, Tang X, Vance CP, White PJ, Zhang F, Shen J.

J Exp Bot. 2014 Jul;65(12):2995-3003. doi: 10.1093/jxb/eru135. Epub 2014 Apr 10.


A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar.

O'Rourke JA, Iniguez LP, Bucciarelli B, Roessler J, Schmutz J, McClean PE, Jackson SA, Hernandez G, Graham MA, Stupar RM, Vance CP.

Front Plant Sci. 2013 Jun 25;4:210. doi: 10.3389/fpls.2013.00210. eCollection 2013.


Genomic heterogeneity and structural variation in soybean near isogenic lines.

Stec AO, Bhaskar PB, Bolon YT, Nolan R, Shoemaker RC, Vance CP, Stupar RM.

Front Plant Sci. 2013 Apr 24;4:104. doi: 10.3389/fpls.2013.00104. eCollection 2013.


Regulatory patterns of a large family of defensin-like genes expressed in nodules of Medicago truncatula.

Nallu S, Silverstein KA, Samac DA, Bucciarelli B, Vance CP, VandenBosch KA.

PLoS One. 2013;8(4):e60355. doi: 10.1371/journal.pone.0060355. Epub 2013 Apr 1.


An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants.

O'Rourke JA, Yang SS, Miller SS, Bucciarelli B, Liu J, Rydeen A, Bozsoki Z, Uhde-Stone C, Tu ZJ, Allan D, Gronwald JW, Vance CP.

Plant Physiol. 2013 Feb;161(2):705-24. doi: 10.1104/pp.112.209254. Epub 2012 Nov 29.


Phosphorus focus editorial.

Vance CP, Chiou TJ.

Plant Physiol. 2011 Jul;156(3):987-8. doi: 10.1104/pp.111.900415. No abstract available.


Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems.

Yang SS, Tu ZJ, Cheung F, Xu WW, Lamb JF, Jung HJ, Vance CP, Gronwald JW.

BMC Genomics. 2011 Apr 19;12:199. doi: 10.1186/1471-2164-12-199.


Update on lupin cluster roots. Update on white lupin cluster root acclimation to phosphorus deficiency.

Cheng L, Bucciarelli B, Shen J, Allan D, Vance CP.

Plant Physiol. 2011 Jul;156(3):1025-32. doi: 10.1104/pp.111.175174. Epub 2011 Apr 4. Review. No abstract available.


White lupin cluster root acclimation to phosphorus deficiency and root hair development involve unique glycerophosphodiester phosphodiesterases.

Cheng L, Bucciarelli B, Liu J, Zinn K, Miller S, Patton-Vogt J, Allan D, Shen J, Vance CP.

Plant Physiol. 2011 Jul;156(3):1131-48. doi: 10.1104/pp.111.173724. Epub 2011 Apr 4.


Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean.

Bolon YT, Haun WJ, Xu WW, Grant D, Stacey MG, Nelson RT, Gerhardt DJ, Jeddeloh JA, Stacey G, Muehlbauer GJ, Orf JH, Naeve SL, Stupar RM, Vance CP.

Plant Physiol. 2011 May;156(1):240-53. doi: 10.1104/pp.110.170811. Epub 2011 Feb 14.


Gene expression patterns are correlated with genomic and genic structure in soybean.

Woody JL, Severin AJ, Bolon YT, Joseph B, Diers BW, Farmer AD, Weeks N, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon SB, May GD, Vance CP, Shoemaker RC.

Genome. 2011 Jan;54(1):10-8. doi: 10.1139/G10-090.


Crucial roles of sucrose and microRNA399 in systemic signaling of P deficiency: a tale of two team players?

Liu J, Vance CP.

Plant Signal Behav. 2010 Dec;5(12):1556-60. Epub 2010 Dec 1. Review.


The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82.

Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, Stupar RM.

Plant Physiol. 2011 Feb;155(2):645-55. doi: 10.1104/pp.110.166736. Epub 2010 Nov 29.


Quantitative trait loci, epigenetics, sugars, and microRNAs: quaternaries in phosphate acquisition and use.

Vance CP.

Plant Physiol. 2010 Oct;154(2):582-8. doi: 10.1104/pp.110.161067. No abstract available.


RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome.

Severin AJ, Woody JL, Bolon YT, Joseph B, Diers BW, Farmer AD, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon SB, May GD, Vance CP, Shoemaker RC.

BMC Plant Biol. 2010 Aug 5;10:160. doi: 10.1186/1471-2229-10-160.


An integrative approach to genomic introgression mapping.

Severin AJ, Peiffer GA, Xu WW, Hyten DL, Bucciarelli B, O'Rourke JA, Bolon YT, Grant D, Farmer AD, May GD, Vance CP, Shoemaker RC, Stupar RM.

Plant Physiol. 2010 Sep;154(1):3-12. doi: 10.1104/pp.110.158949. Epub 2010 Jul 23.


Nitric oxide is involved in phosphorus deficiency-induced cluster-root development and citrate exudation in white lupin.

Wang BL, Tang XY, Cheng LY, Zhang AZ, Zhang WH, Zhang FS, Liu JQ, Cao Y, Allan DL, Vance CP, Shen JB.

New Phytol. 2010 Sep;187(4):1112-23. doi: 10.1111/j.1469-8137.2010.03323.x. Epub 2010 Jun 14.


MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity.

Valdés-López O, Yang SS, Aparicio-Fabre R, Graham PH, Reyes JL, Vance CP, Hernández G.

New Phytol. 2010 Aug;187(3):805-18. doi: 10.1111/j.1469-8137.2010.03320.x. Epub 2010 Jun 11.


Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes.

Yang SS, Xu WW, Tesfaye M, Lamb JF, Jung HJ, VandenBosch KA, Vance CP, Gronwald JW.

BMC Genomics. 2010 May 24;11:323. doi: 10.1186/1471-2164-11-323.


Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip Soybean Genome Array: optimizing analysis by masking biased probes.

Yang SS, Valdés-López O, Xu WW, Bucciarelli B, Gronwald JW, Hernández G, Vance CP.

BMC Plant Biol. 2010 May 7;10:85. doi: 10.1186/1471-2229-10-85.


Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean.

Bolon YT, Joseph B, Cannon SB, Graham MA, Diers BW, Farmer AD, May GD, Muehlbauer GJ, Specht JE, Tu ZJ, Weeks N, Xu WW, Shoemaker RC, Vance CP.

BMC Plant Biol. 2010 Mar 3;10:41. doi: 10.1186/1471-2229-10-41.


Systemic signaling and local sensing of phosphate in common bean: cross-talk between photosynthate and microRNA399.

Liu JQ, Allan DL, Vance CP.

Mol Plant. 2010 Mar;3(2):428-37. doi: 10.1093/mp/ssq008. Epub 2010 Feb 10.


Legume focus: model species sequenced, mutagenesis approaches extended, and debut of a new model.

O'Brian MR, Vance CP, Vandenbosch KA.

Plant Physiol. 2009 Nov;151(3):969. doi: 10.1104/pp.109.900305. No abstract available.


Knockdown of CELL DIVISION CYCLE16 reveals an inverse relationship between lateral root and nodule numbers and a link to auxin in Medicago truncatula.

Kuppusamy KT, Ivashuta S, Bucciarelli B, Vance CP, Gantt JS, Vandenbosch KA.

Plant Physiol. 2009 Nov;151(3):1155-66. doi: 10.1104/pp.109.143024. Epub 2009 Sep 29.


Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants.

Hernández G, Valdés-López O, Ramírez M, Goffard N, Weiller G, Aparicio-Fabre R, Fuentes SI, Erban A, Kopka J, Udvardi MK, Vance CP.

Plant Physiol. 2009 Nov;151(3):1221-38. doi: 10.1104/pp.109.143842. Epub 2009 Sep 15.


Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response.

O'Rourke JA, Nelson RT, Grant D, Schmutz J, Grimwood J, Cannon S, Vance CP, Graham MA, Shoemaker RC.

BMC Genomics. 2009 Aug 13;10:376. doi: 10.1186/1471-2164-10-376.


Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots.

Valdés-López O, Arenas-Huertero C, Ramírez M, Girard L, Sánchez F, Vance CP, Luis Reyes J, Hernández G.

Plant Cell Environ. 2008 Dec;31(12):1834-43. doi: 10.1111/j.1365-3040.2008.01883.x. Epub 2008 Sep 2.


Arabidopsis UDP-sugar pyrophosphorylase: evidence for two isoforms.

Gronwald JW, Miller SS, Vance CP.

Plant Physiol Biochem. 2008 Dec;46(12):1101-5. doi: 10.1016/j.plaphy.2008.07.001. Epub 2008 Jul 17.


Genomic and genetic control of phosphate stress in legumes.

Tesfaye M, Liu J, Allan DL, Vance CP.

Plant Physiol. 2007 Jun;144(2):594-603. Review. No abstract available.


Legume biology: sequence to seeds.

O'Brian MR, Vance CP.

Plant Physiol. 2007 Jun;144(2):537. No abstract available.


Phosphorus stress in common bean: root transcript and metabolic responses.

Hernández G, Ramírez M, Valdés-López O, Tesfaye M, Graham MA, Czechowski T, Schlereth A, Wandrey M, Erban A, Cheung F, Wu HC, Lara M, Town CD, Kopka J, Udvardi MK, Vance CP.

Plant Physiol. 2007 Jun;144(2):752-67. Epub 2007 Apr 20.


Biodegradation of atrazine in transgenic plants expressing a modified bacterial atrazine chlorohydrolase (atzA) gene.

Wang L, Samac DA, Shapir N, Wackett LP, Vance CP, Olszewski NE, Sadowsky MJ.

Plant Biotechnol J. 2005 Sep;3(5):475-86.


A standardized method for analysis of Medicago truncatula phenotypic development.

Bucciarelli B, Hanan J, Palmquist D, Vance CP.

Plant Physiol. 2006 Sep;142(1):207-19. Epub 2006 Jul 28.


Nitrogen fixation by white lupin under phosphorus deficiency.

Schulze J, Temple G, Temple SJ, Beschow H, Vance CP.

Ann Bot. 2006 Oct;98(4):731-40. Epub 2006 Jul 19.


Insights into symbiotic nitrogen fixation in Medicago truncatula.

Tesfaye M, Samac DA, Vance CP.

Mol Plant Microbe Interact. 2006 Mar;19(3):330-41.


Recruitment of novel calcium-binding proteins for root nodule symbiosis in Medicago truncatula.

Liu J, Miller SS, Graham M, Bucciarelli B, Catalano CM, Sherrier DJ, Samac DA, Ivashuta S, Fedorova M, Matsumoto P, Gantt JS, Vance CP.

Plant Physiol. 2006 May;141(1):167-77. Epub 2006 Mar 16.


RNA interference identifies a calcium-dependent protein kinase involved in Medicago truncatula root development.

Ivashuta S, Liu J, Liu J, Lohar DP, Haridas S, Bucciarelli B, VandenBosch KA, Vance CP, Harrison MJ, Gantt JS.

Plant Cell. 2005 Nov;17(11):2911-21. Epub 2005 Sep 30.


Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics.

Ramírez M, Graham MA, Blanco-López L, Silvente S, Medrano-Soto A, Blair MW, Hernández G, Vance CP, Lara M.

Plant Physiol. 2005 Apr;137(4):1211-27.


Signaling of phosphorus deficiency-induced gene expression in white lupin requires sugar and phloem transport.

Liu J, Samac DA, Bucciarelli B, Allan DL, Vance CP.

Plant J. 2005 Jan;41(2):257-68.


Localization of superoxide dismutases and hydrogen peroxide in legume root nodules.

Rubio MC, James EK, Clemente MR, Bucciarelli B, Fedorova M, Vance CP, Becana M.

Mol Plant Microbe Interact. 2004 Dec;17(12):1294-305.


Nylon filter arrays reveal differential gene expression in proteoid roots of white lupin in response to phosphorus deficiency.

Uhde-Stone C, Zinn KE, Ramirez-Yáñez M, Li A, Vance CP, Allan DL.

Plant Physiol. 2003 Mar;131(3):1064-79.


Legumes: importance and constraints to greater use.

Graham PH, Vance CP.

Plant Physiol. 2003 Mar;131(3):872-7. Review. No abstract available.

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