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Items: 6

1.

Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption-Ionization Time of Flight Mass Spectrometry Data.

Dumolin C, Aerts M, Verheyde B, Schellaert S, Vandamme T, Van der Jeugt F, De Canck E, Cnockaert M, Wieme AD, Cleenwerck I, Peiren J, Dawyndt P, Vandamme P, Carlier A.

mSystems. 2019 Sep 10;4(5). pii: e00437-19. doi: 10.1128/mSystems.00437-19.

2.

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome.

De Tender C, Mesuere B, Van der Jeugt F, Haegeman A, Ruttink T, Vandecasteele B, Dawyndt P, Debode J, Kuramae EE.

Sci Rep. 2019 Jul 9;9(1):9890. doi: 10.1038/s41598-019-46106-x.

3.

Unipept 4.0: Functional Analysis of Metaproteome Data.

Gurdeep Singh R, Tanca A, Palomba A, Van der Jeugt F, Verschaffelt P, Uzzau S, Martens L, Dawyndt P, Mesuere B.

J Proteome Res. 2019 Feb 1;18(2):606-615. doi: 10.1021/acs.jproteome.8b00716. Epub 2018 Dec 4.

PMID:
30465426
4.

High-throughput metaproteomics data analysis with Unipept: A tutorial.

Mesuere B, Van der Jeugt F, Willems T, Naessens T, Devreese B, Martens L, Dawyndt P.

J Proteomics. 2018 Jan 16;171:11-22. doi: 10.1016/j.jprot.2017.05.022. Epub 2017 May 24.

PMID:
28552653
5.

The unique peptidome: Taxon-specific tryptic peptides as biomarkers for targeted metaproteomics.

Mesuere B, Van der Jeugt F, Devreese B, Vandamme P, Dawyndt P.

Proteomics. 2016 Sep;16(17):2313-8. doi: 10.1002/pmic.201600023. Epub 2016 Aug 16.

PMID:
27380722
6.

Unipept web services for metaproteomics analysis.

Mesuere B, Willems T, Van der Jeugt F, Devreese B, Vandamme P, Dawyndt P.

Bioinformatics. 2016 Jun 1;32(11):1746-8. doi: 10.1093/bioinformatics/btw039. Epub 2016 Jan 27.

PMID:
26819472

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