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Items: 10

1.

From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.

Van der Auwera GA, Carneiro MO, Hartl C, Poplin R, Del Angel G, Levy-Moonshine A, Jordan T, Shakir K, Roazen D, Thibault J, Banks E, Garimella KV, Altshuler D, Gabriel S, DePristo MA.

Curr Protoc Bioinformatics. 2013;43:11.10.1-33. doi: 10.1002/0471250953.bi1110s43.

2.

Diverse broad-host-range plasmids from freshwater carry few accessory genes.

Brown CJ, Sen D, Yano H, Bauer ML, Rogers LM, Van der Auwera GA, Top EM.

Appl Environ Microbiol. 2013 Dec;79(24):7684-95. doi: 10.1128/AEM.02252-13. Epub 2013 Oct 4.

3.

Whole-Genome Sequences of 94 Environmental Isolates of Bacillus cereus Sensu Lato.

Van der Auwera GA, Feldgarden M, Kolter R, Mahillon J.

Genome Announc. 2013 Oct 3;1(5). pii: e00380-13. doi: 10.1128/genomeA.00380-13.

4.

Broad-host-range plasmids from agricultural soils have IncP-1 backbones with diverse accessory genes.

Sen D, Van der Auwera GA, Rogers LM, Thomas CM, Brown CJ, Top EM.

Appl Environ Microbiol. 2011 Nov;77(22):7975-83. doi: 10.1128/AEM.05439-11. Epub 2011 Sep 23.

5.

Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids.

Van der Auwera GA, Król JE, Suzuki H, Foster B, Van Houdt R, Brown CJ, Mergeay M, Top EM.

Antonie Van Leeuwenhoek. 2009 Aug;96(2):193-204. doi: 10.1007/s10482-009-9316-9. Epub 2009 Mar 4.

PMID:
19259779
6.

Self-transfer and mobilisation capabilities of the pXO2-like plasmid pBT9727 from Bacillus thuringiensis subsp. konkukian 97-27.

Van der Auwera GA, Timmery S, Mahillon J.

Plasmid. 2008 Mar;59(2):134-8. doi: 10.1016/j.plasmid.2007.11.007. Epub 2008 Feb 12.

PMID:
18272219
7.

Molecular characterization of a DNA fragment harboring the replicon of pBMB165 from Bacillus thuringiensis subsp. tenebrionis.

Huang J, Guo S, Mahillon J, Van der Auwera GA, Wang L, Han D, Yu Z, Sun M.

BMC Genomics. 2006 Oct 23;7:270.

8.

Plasmid exchanges among members of the Bacillus cereus group in foodstuffs.

Van der Auwera GA, Timmery S, Hoton F, Mahillon J.

Int J Food Microbiol. 2007 Jan 25;113(2):164-72. Epub 2006 Sep 25.

PMID:
16996631
9.

Hemolytic and nonhemolytic enterotoxin genes are broadly distributed among Bacillus thuringiensis isolated from wild mammals.

Swiecicka I, Van der Auwera GA, Mahillon J.

Microb Ecol. 2006 Oct;52(3):544-51. Epub 2006 Aug 31.

PMID:
16944343

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