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Items: 22

1.

Unsupervised machine learning for exploratory data analysis in imaging mass spectrometry.

Verbeeck N, Caprioli RM, Van de Plas R.

Mass Spectrom Rev. 2019 Oct 11. doi: 10.1002/mas.21602. [Epub ahead of print] Review.

PMID:
31602691
2.

High Performance Molecular Imaging with MALDI Trapped Ion Mobility Time-of-Flight (timsTOF) Mass Spectrometry.

Spraggins JM, Djambazova KV, Rivera ES, Migas L, Neumann EK, Fuetterer A, Suetering J, Goedecke N, Ly A, Van de Plas R, Caprioli RM.

Anal Chem. 2019 Oct 8. doi: 10.1021/acs.analchem.9b03612. [Epub ahead of print]

PMID:
31593446
3.

Next Generation Histology-Directed Imaging Mass Spectrometry Driven by Autofluorescence Microscopy.

Patterson NH, Tuck M, Lewis A, Kaushansky A, Norris JL, Van de Plas R, Caprioli RM.

Anal Chem. 2018 Nov 6;90(21):12404-12413. doi: 10.1021/acs.analchem.8b02885. Epub 2018 Oct 16.

PMID:
30274514
4.

Advanced Registration and Analysis of MALDI Imaging Mass Spectrometry Measurements through Autofluorescence Microscopy.

Patterson NH, Tuck M, Van de Plas R, Caprioli RM.

Anal Chem. 2018 Nov 6;90(21):12395-12403. doi: 10.1021/acs.analchem.8b02884. Epub 2018 Oct 16.

PMID:
30272960
5.

Integrated molecular imaging reveals tissue heterogeneity driving host-pathogen interactions.

Cassat JE, Moore JL, Wilson KJ, Stark Z, Prentice BM, Van de Plas R, Perry WJ, Zhang Y, Virostko J, Colvin DC, Rose KL, Judd AM, Reyzer ML, Spraggins JM, Grunenwald CM, Gore JC, Caprioli RM, Skaar EP.

Sci Transl Med. 2018 Mar 14;10(432). pii: eaan6361. doi: 10.1126/scitranslmed.aan6361.

6.

Enhanced Ion Transmission Efficiency up to m/ z 24 000 for MALDI Protein Imaging Mass Spectrometry.

Prentice BM, Ryan DJ, Van de Plas R, Caprioli RM, Spraggins JM.

Anal Chem. 2018 Apr 17;90(8):5090-5099. doi: 10.1021/acs.analchem.7b05105. Epub 2018 Apr 2.

PMID:
29444410
7.

Connecting imaging mass spectrometry and magnetic resonance imaging-based anatomical atlases for automated anatomical interpretation and differential analysis.

Verbeeck N, Spraggins JM, Murphy MJM, Wang HD, Deutch AY, Caprioli RM, Van de Plas R.

Biochim Biophys Acta Proteins Proteom. 2017 Jul;1865(7):967-977. doi: 10.1016/j.bbapap.2017.02.016. Epub 2017 Feb 27.

PMID:
28254588
8.

Integrated, High-Throughput, Multiomics Platform Enables Data-Driven Construction of Cellular Responses and Reveals Global Drug Mechanisms of Action.

Norris JL, Farrow MA, Gutierrez DB, Palmer LD, Muszynski N, Sherrod SD, Pino JC, Allen JL, Spraggins JM, Lubbock AL, Jordan A, Burns W, Poland JC, Romer C, Manier ML, Nei YW, Prentice BM, Rose KL, Hill S, Van de Plas R, Tsui T, Braman NM, Keller MR, Rutherford SA, Lobdell N, Lopez CF, Lacy DB, McLean JA, Wikswo JP, Skaar EP, Caprioli RM.

J Proteome Res. 2017 Mar 3;16(3):1364-1375. doi: 10.1021/acs.jproteome.6b01004. Epub 2017 Feb 9.

PMID:
28088864
9.

3-D imaging mass spectrometry of protein distributions in mouse Neurofibromatosis 1 (NF1)-associated optic glioma.

Anderson DM, Van de Plas R, Rose KL, Hill S, Schey KL, Solga AC, Gutmann DH, Caprioli RM.

J Proteomics. 2016 Oct 21;149:77-84. doi: 10.1016/j.jprot.2016.02.004. Epub 2016 Feb 13.

10.

Phospholipid profiling identifies acyl chain elongation as a ubiquitous trait and potential target for the treatment of lung squamous cell carcinoma.

Marien E, Meister M, Muley T, Gomez Del Pulgar T, Derua R, Spraggins JM, Van de Plas R, Vanderhoydonc F, Machiels J, Binda MM, Dehairs J, Willette-Brown J, Hu Y, Dienemann H, Thomas M, Schnabel PA, Caprioli RM, Lacal JC, Waelkens E, Swinnen JV.

Oncotarget. 2016 Mar 15;7(11):12582-97. doi: 10.18632/oncotarget.7179.

11.

Non-small cell lung cancer is characterized by dramatic changes in phospholipid profiles.

Marien E, Meister M, Muley T, Fieuws S, Bordel S, Derua R, Spraggins J, Van de Plas R, Dehairs J, Wouters J, Bagadi M, Dienemann H, Thomas M, Schnabel PA, Caprioli RM, Waelkens E, Swinnen JV.

Int J Cancer. 2015 Oct 1;137(7):1539-48. doi: 10.1002/ijc.29517. Epub 2015 Apr 7.

12.

Image fusion of mass spectrometry and microscopy: a multimodality paradigm for molecular tissue mapping.

Van de Plas R, Yang J, Spraggins J, Caprioli RM.

Nat Methods. 2015 Apr;12(4):366-72. doi: 10.1038/nmeth.3296. Epub 2015 Feb 23.

13.

Towards automated discrimination of lipids versus peptides from full scan mass spectra.

Dittwald P, Nghia VT, Harris GA, Caprioli RM, Van de Plas R, Laukens K, Gambin A, Valkenborg D.

EuPA Open Proteom. 2014 Sep 1;4:87-100.

14.

Automated anatomical interpretation of ion distributions in tissue: linking imaging mass spectrometry to curated atlases.

Verbeeck N, Yang J, De Moor B, Caprioli RM, Waelkens E, Van de Plas R.

Anal Chem. 2014 Sep 16;86(18):8974-82. doi: 10.1021/ac502838t. Epub 2014 Aug 25.

15.

Combined mRNA microarray and proteomic analysis of eutopic endometrium of women with and without endometriosis.

Fassbender A, Verbeeck N, Börnigen D, Kyama CM, Bokor A, Vodolazkaia A, Peeraer K, Tomassetti C, Meuleman C, Gevaert O, Van de Plas R, Ojeda F, De Moor B, Moreau Y, Waelkens E, D'Hooghe TM.

Hum Reprod. 2012 Jul;27(7):2020-9. doi: 10.1093/humrep/des127. Epub 2012 May 3.

PMID:
22556377
16.

Proteomics analysis of plasma for early diagnosis of endometriosis.

Fassbender A, Waelkens E, Verbeeck N, Kyama CM, Bokor A, Vodolazkaia A, Van de Plas R, Meuleman C, Peeraer K, Tomassetti C, Gevaert O, Ojeda F, De Moor B, D'Hooghe T.

Obstet Gynecol. 2012 Feb;119(2 Pt 1):276-85. doi: 10.1097/AOG.0b013e31823fda8d.

PMID:
22270279
17.

TRIzol treatment of secretory phase endometrium allows combined proteomic and mRNA microarray analysis of the same sample in women with and without endometriosis.

Fassbender A, Simsa P, Kyama CM, Waelkens E, Mihalyi A, Meuleman C, Gevaert O, Van de Plas R, de Moor B, D'Hooghe TM.

Reprod Biol Endocrinol. 2010 Oct 21;8:123. doi: 10.1186/1477-7827-8-123. Erratum in: Reprod Biol Endocrinol. 2011;9:44.

18.

Evaluation of endometrial biomarkers for semi-invasive diagnosis of endometriosis.

Kyama CM, Mihalyi A, Gevaert O, Waelkens E, Simsa P, Van de Plas R, Meuleman C, De Moor B, D'Hooghe TM.

Fertil Steril. 2011 Mar 15;95(4):1338-43.e1-3. doi: 10.1016/j.fertnstert.2010.06.084. Epub 2010 Aug 30.

PMID:
20800833
19.

A tutorial on support vector machine-based methods for classification problems in chemometrics.

Luts J, Ojeda F, Van de Plas R, De Moor B, Van Huffel S, Suykens JA.

Anal Chim Acta. 2010 Apr 30;665(2):129-45. doi: 10.1016/j.aca.2010.03.030. Epub 2010 Mar 24.

PMID:
20417323
20.

Insulin crystallization depends on zinc transporter ZnT8 expression, but is not required for normal glucose homeostasis in mice.

Lemaire K, Ravier MA, Schraenen A, Creemers JW, Van de Plas R, Granvik M, Van Lommel L, Waelkens E, Chimienti F, Rutter GA, Gilon P, in't Veld PA, Schuit FC.

Proc Natl Acad Sci U S A. 2009 Sep 1;106(35):14872-7. doi: 10.1073/pnas.0906587106. Epub 2009 Aug 18.

21.

The use of laser microdissection and SELDI-TOF MS in ovarian cancer tissue to identify protein profiles.

Cadron I, Van Gorp T, Amant F, Vergote I, Moerman P, Waelkens E, Daemen A, Van De Plas R, De Moor B, Zeillinger R.

Anticancer Res. 2009 Apr;29(4):1039-45.

22.

Prospective exploration of biochemical tissue composition via imaging mass spectrometry guided by principal component analysis.

Van de Plas R, Ojeda F, Dewil M, Van Den Bosch L, De Moor B, Waelkens E.

Pac Symp Biocomput. 2007:458-69.

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