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Long-term exposure of activated sludge in chemostats leads to changes in microbial communities composition and enhanced biodegradation of 4-chloroaniline and N-methylpiperazine.

Poursat BAJ, van Spanning RJM, Braster M, Helmus R, de Voogt P, Parsons JR.

Chemosphere. 2020 Mar;242:125102. doi: 10.1016/j.chemosphere.2019.125102. Epub 2019 Oct 22.


Circular Spectropolarimetric Sensing of Vegetation in the Field: Possibilities for the Remote Detection of Extraterrestrial Life.

Patty CHL, Ten Kate IL, Buma WJ, van Spanning RJM, Steinbach G, Ariese F, Snik F.

Astrobiology. 2019 Oct;19(10):1221-1229. doi: 10.1089/ast.2019.2050. Epub 2019 Aug 27.


Biodegradation of metformin and its transformation product, guanylurea, by natural and exposed microbial communities.

Poursat BAJ, van Spanning RJM, Braster M, Helmus R, de Voogt P, Parsons JR.

Ecotoxicol Environ Saf. 2019 Oct 30;182:109414. doi: 10.1016/j.ecoenv.2019.109414. Epub 2019 Jul 10.


Dynamic Metabolic Rewiring Enables Efficient Acetyl Coenzyme A Assimilation in Paracoccus denitrificans.

Kremer K, van Teeseling MCF, Schada von Borzyskowski L, Bernhardsgrütter I, van Spanning RJM, Gates AJ, Remus-Emsermann MNP, Thanbichler M, Erb TJ.

mBio. 2019 Jul 9;10(4). pii: e00805-19. doi: 10.1128/mBio.00805-19.


Microbial Communities in Sediments From Four Mildly Acidic Ephemeral Salt Lakes in the Yilgarn Craton (Australia) - Terrestrial Analogs to Ancient Mars.

Aerts JW, van Spanning RJM, Flahaut J, Molenaar D, Bland PA, Genge MJ, Ehrenfreund P, Martins Z.

Front Microbiol. 2019 May 6;10:779. doi: 10.3389/fmicb.2019.00779. eCollection 2019.


Circular spectropolarimetric sensing of higher plant and algal chloroplast structural variations.

Patty CHL, Ariese F, Buma WJ, Ten Kate IL, van Spanning RJM, Snik F.

Photosynth Res. 2019 May;140(2):129-139. doi: 10.1007/s11120-018-0572-2. Epub 2018 Aug 23.


Imaging linear and circular polarization features in leaves with complete Mueller matrix polarimetry.

Patty CHL, Luo DA, Snik F, Ariese F, Buma WJ, Ten Kate IL, van Spanning RJM, Sparks WB, Germer TA, Garab G, Kudenov MW.

Biochim Biophys Acta Gen Subj. 2018 Jun;1862(6):1350-1363. doi: 10.1016/j.bbagen.2018.03.005. Epub 2018 Mar 9.


Regulation of nitrogen metabolism in the nitrate-ammonifying soil bacterium Bacillus vireti and evidence for its ability to grow using N2 O as electron acceptor.

Mania D, Heylen K, van Spanning RJ, Frostegård Å.

Environ Microbiol. 2016 Sep;18(9):2937-50. doi: 10.1111/1462-2920.13124. Epub 2016 Jan 18.


The nitrate-ammonifying and nosZ-carrying bacterium Bacillus vireti is a potent source and sink for nitric and nitrous oxide under high nitrate conditions.

Mania D, Heylen K, van Spanning RJ, Frostegård A.

Environ Microbiol. 2014 Oct;16(10):3196-210. doi: 10.1111/1462-2920.12478. Epub 2014 May 15.


Expression of nitrous oxide reductase in Paracoccus denitrificans is regulated by oxygen and nitric oxide through FnrP and NNR.

Bergaust L, van Spanning RJM, Frostegård Å, Bakken LR.

Microbiology. 2012 Mar;158(Pt 3):826-834. doi: 10.1099/mic.0.054148-0. Epub 2011 Dec 15.


Ferric reductase A is essential for effective iron acquisition in Paracoccus denitrificans.

Sedlácek V, van Spanning RJ, Kucera I.

Microbiology. 2009 Apr;155(Pt 4):1294-301. doi: 10.1099/mic.0.022715-0.


Characterization of the quinone reductase activity of the ferric reductase B protein from Paracoccus denitrificans.

Sedlácek V, van Spanning RJ, Kucera I.

Arch Biochem Biophys. 2009 Mar 1;483(1):29-36. doi: 10.1016/ Epub 2008 Dec 30.


Effects of probiotic Lactobacillus salivarius W24 on the compositional stability of oral microbial communities.

Pham LC, van Spanning RJ, Röling WF, Prosperi AC, Terefework Z, Ten Cate JM, Crielaard W, Zaura E.

Arch Oral Biol. 2009 Feb;54(2):132-7. doi: 10.1016/j.archoralbio.2008.09.007. Epub 2008 Oct 30.


The organisation of proton motive and non-proton motive redox loops in prokaryotic respiratory systems.

Simon J, van Spanning RJ, Richardson DJ.

Biochim Biophys Acta. 2008 Dec;1777(12):1480-90. doi: 10.1016/j.bbabio.2008.09.008. Epub 2008 Sep 30. Review.


MLPA diagnostics of complex microbial communities: relative quantification of bacterial species in oral biofilms.

Terefework Z, Pham CL, Prosperi AC, Entius MM, Errami A, van Spanning RJ, Zaura E, Ten Cate JM, Crielaard W.

J Microbiol Methods. 2008 Dec;75(3):558-65. doi: 10.1016/j.mimet.2008.08.012. Epub 2008 Sep 13.


Specificity of FNR-type regulators in Paracoccus denitrificans.

Veldman R, Reijnders WN, van Spanning RJ.

Biochem Soc Trans. 2006 Feb;34(Pt 1):94-6.


Novel nirK cluster genes in Nitrosomonas europaea are required for NirK-dependent tolerance to nitrite.

Beaumont HJ, Lens SI, Westerhoff HV, van Spanning RJ.

J Bacteriol. 2005 Oct;187(19):6849-51.


NosX function connects to nitrous oxide (N2O) reduction by affecting the Cu(Z) center of NosZ and its activity in vivo.

Wunsch P, Körner H, Neese F, van Spanning RJ, Kroneck PM, Zumft WG.

FEBS Lett. 2005 Aug 29;579(21):4605-9.


Denitrification and ammonia oxidation by Nitrosomonas europaea wild-type, and NirK- and NorB-deficient mutants.

Schmidt I, van Spanning RJ, Jetten MS.

Microbiology. 2004 Dec;150(Pt 12):4107-14.


Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor.

Beaumont HJ, Lens SI, Reijnders WN, Westerhoff HV, van Spanning RJ.

Mol Microbiol. 2004 Oct;54(1):148-58.


Nitrosomonas europaea expresses a nitric oxide reductase during nitrification.

Beaumont HJ, van Schooten B, Lens SI, Westerhoff HV, van Spanning RJ.

J Bacteriol. 2004 Jul;186(13):4417-21.


Fine-tuned regulation by oxygen and nitric oxide of the activity of a semi-synthetic FNR-dependent promoter and expression of denitrification enzymes in Paracoccus denitrificans.

Mazoch J, Kuňák M, Kučera I, van Spanning RJM.

Microbiology. 2003 Dec;149(Pt 12):3405-3412. doi: 10.1099/mic.0.26546-0.


DNA supercoiling by gyrase is linked to nucleoid compaction.

Stuger R, Woldringh CL, van der Weijden CC, Vischer NO, Bakker BM, van Spanning RJ, Snoep JL, Westerhoff HV.

Mol Biol Rep. 2002;29(1-2):79-82. Erratum in: Mol Biol Rep. 2003 Jun;30(2):133.


Nitrite reductase of Nitrosomonas europaea is not essential for production of gaseous nitrogen oxides and confers tolerance to nitrite.

Beaumont HJ, Hommes NG, Sayavedra-Soto LA, Arp DJ, Arciero DM, Hooper AB, Westerhoff HV, van Spanning RJ.

J Bacteriol. 2002 May;184(9):2557-60.


Cytochromes c(550), c(552), and c(1) in the electron transport network of Paracoccus denitrificans: redundant or subtly different in function?

Otten MF, van der Oost J, Reijnders WN, Westerhoff HV, Ludwig B, Van Spanning RJ.

J Bacteriol. 2001 Dec;183(24):7017-26.


Regulation of expression of terminal oxidases in Paracoccus denitrificans.

Otten MF, Stork DM, Reijnders WN, Westerhoff HV, Van Spanning RJ.

Eur J Biochem. 2001 Apr;268(8):2486-97.


Two-component system that regulates methanol and formaldehyde oxidation in Paracoccus denitrificans.

Harms N, Reijnders WN, Koning S, van Spanning RJ.

J Bacteriol. 2001 Jan;183(2):664-70.


Heterologous NNR-mediated nitric oxide signaling in Escherichia coli.

Hutchings MI, Shearer N, Wastell S, van Spanning RJ, Spiro S.

J Bacteriol. 2000 Nov;182(22):6434-9.


The NosX and NirX proteins of Paracoccus denitrificans are functional homologues: their role in maturation of nitrous oxide reductase.

Saunders NF, Hornberg JJ, Reijnders WN, Westerhoff HV, de Vries S, van Spanning RJ.

J Bacteriol. 2000 Sep;182(18):5211-7.


Transcription regulation of the nir gene cluster encoding nitrite reductase of Paracoccus denitrificans involves NNR and NirI, a novel type of membrane protein.

Saunders NF, Houben EN, Koefoed S, de Weert S, Reijnders WN, Westerhoff HV, De Boer AP, Van Spanning RJ.

Mol Microbiol. 1999 Oct;34(1):24-36.


Anaerobic growth of Paracoccus denitrificans requires cobalamin: characterization of cobK and cobJ genes.

Shearer N, Hinsley AP, Van Spanning RJ, Spiro S.

J Bacteriol. 1999 Nov;181(22):6907-13.


Heterologous expression of correctly assembled methylamine dehydrogenase in Rhodobacter sphaeroides.

Graichen ME, Jones LH, Sharma BV, van Spanning RJ, Hosler JP, Davidson VL.

J Bacteriol. 1999 Jul;181(14):4216-22.


Nitric oxide is a signal for NNR-mediated transcription activation in Paracoccus denitrificans.

Van Spanning RJ, Houben E, Reijnders WN, Spiro S, Westerhoff HV, Saunders N.

J Bacteriol. 1999 Jul;181(13):4129-32.


Pseudoazurin mediates periplasmic electron flow in a mutant strain of Paracoccus denitrificans lacking cytochrome c550.

Koutný M, Kucera I, Tesarík R, Turánek J, Van Spanning RJ.

FEBS Lett. 1999 Apr 1;448(1):157-9.


The reduction state of the Q-pool regulates the electron flux through the branched respiratory network of Paracoccus denitrificans.

Otten MF, Reijnders WN, Bedaux JJ, Westerhoff HV, Krab K, Van Spanning RJ.

Eur J Biochem. 1999 May;261(3):767-74.


Molecular genetics of the genus Paracoccus: metabolically versatile bacteria with bioenergetic flexibility.

Baker SC, Ferguson SJ, Ludwig B, Page MD, Richter OM, van Spanning RJ.

Microbiol Mol Biol Rev. 1998 Dec;62(4):1046-78. Review.


Comparison of energization of complex I in membrane particles from Paracoccus denitrificans and bovine heart mitochondria.

Kotlyar AB, Albracht SP, van Spanning RJ.

Biochim Biophys Acta. 1998 Jun 10;1365(1-2):53-9. Review.


MauE and MauD proteins are essential in methylamine metabolism of Paracoccus denitrificans.

van der Palen CJ, Reijnders WN, de Vries S, Duine JA, van Spanning RJ.

Antonie Van Leeuwenhoek. 1997 Oct;72(3):219-28.


Expression of the mau gene cluster of Paracoccus denitrificans is controlled by MauR and a second transcription regulator.

Delorme C, Huisman TT, Reijnders WN, Chan YL, Harms N, Stouthamer AH, van Spanning RJ.

Microbiology. 1997 Mar;143 ( Pt 3):793-801.


Emerging principles of inorganic nitrogen metabolism in Paracoccus denitrificans and related bacteria.

Stouthamer AH, de Boer AP, van der Oost J, van Spanning RJ.

Antonie Van Leeuwenhoek. 1997 Feb;71(1-2):33-41. Review.


The pseudoazurin gene from Thiosphaera pantotropha: analysis of upstream putative regulatory sequences and overexpression in Escherichia coli.

Leung YC, Chan C, Reader JS, Willis AC, van Spanning RJ, Ferguson SJ, Radford SE.

Biochem J. 1997 Feb 1;321 ( Pt 3):699-705.


Mutational analysis of the nor gene cluster which encodes nitric-oxide reductase from Paracoccus denitrificans.

de Boer AP, van der Oost J, Reijnders WN, Westerhoff HV, Stouthamer AH, van Spanning RJ.

Eur J Biochem. 1996 Dec 15;242(3):592-600.


An alternative model for haem ligation in nitrate reductase and analogous respiratory cytochrome b complexes.

van der Oost J, Nederkoorn PH, Stouthamer AH, Westerhoff HV, van Spanning RJ.

Mol Microbiol. 1996 Oct;22(1):193-6. No abstract available.


Structural and functional analysis of aa3-type and cbb3-type cytochrome c oxidases of Paracoccus denitrificans reveals significant differences in proton-pump design.

de Gier JW, Schepper M, Reijnders WN, van Dyck SJ, Slotboom DJ, Warne A, Saraste M, Krab K, Finel M, Stouthamer AH, van Spanning RJ, van der Oost J.

Mol Microbiol. 1996 Jun;20(6):1247-60.


Regulation of oxidative phosphorylation: the flexible respiratory network of Paracoccus denitrificans.

Van Spanning RJ, de Boer AP, Reijnders WN, De Gier JW, Delorme CO, Stouthamer AH, Westerhoff HV, Harms N, van der Oost J.

J Bioenerg Biomembr. 1995 Oct;27(5):499-512. Review.


Reversed electron transfer through the bc1 complex enables a cytochrome c oxidase mutant (delta aa3/cbb3) of Paracoccus denitrificans to grow on methylamine.

van der Oost J, Schepper M, Stouthamer AH, Westerhoff HV, van Spanning RJ, de Gier JW.

FEBS Lett. 1995 Sep 11;371(3):267-70.

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