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Items: 1 to 50 of 165

1.

Elevated CO2 and Warming Altered Grassland Microbial Communities in Soil Top-Layers.

Yu H, Deng Y, He Z, Van Nostrand JD, Wang S, Jin D, Wang A, Wu L, Wang D, Tai X, Zhou J.

Front Microbiol. 2018 Aug 14;9:1790. doi: 10.3389/fmicb.2018.01790. eCollection 2018.

2.

Functional activity and functional gene diversity of a Cu-contaminated soil remediated by aided phytostabilization using compost, dolomitic limestone and a mixed tree stand.

Xue K, Zhou J, Van Nostrand J, Mench M, Bes C, Giagnoni L, Renella G.

Environ Pollut. 2018 Nov;242(Pt A):229-238. doi: 10.1016/j.envpol.2018.06.057. Epub 2018 Jun 27.

PMID:
29980041
3.

Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass.

Guo X, Zhou X, Hale L, Yuan M, Feng J, Ning D, Shi Z, Qin Y, Liu F, Wu L, He Z, Van Nostrand JD, Liu X, Luo Y, Tiedje JM, Zhou J.

Front Microbiol. 2018 May 31;9:954. doi: 10.3389/fmicb.2018.00954. eCollection 2018.

4.

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression.

Dignam BEA, O'Callaghan M, Condron LM, Kowalchuk GA, Van Nostrand JD, Zhou J, Wakelin SA.

PLoS One. 2018 May 7;13(5):e0196581. doi: 10.1371/journal.pone.0196581. eCollection 2018.

5.

Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition.

Christensen GA, Moon J, Veach AM, Mosher JJ, Wymore AM, van Nostrand JD, Zhou J, Hazen TC, Arkin AP, Elias DA.

PLoS One. 2018 Mar 20;13(3):e0194663. doi: 10.1371/journal.pone.0194663. eCollection 2018.

6.

Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China.

Vishnivetskaya TA, Hu H, Van Nostrand JD, Wymore AM, Xu X, Qiu G, Feng X, Zhou J, Brown SD, Brandt CC, Podar M, Gu B, Elias DA.

Environ Sci Process Impacts. 2018 Apr 25;20(4):673-685. doi: 10.1039/c7em00558j.

PMID:
29504614
7.

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

He Z, Zhang P, Wu L, Rocha AM, Tu Q, Shi Z, Wu B, Qin Y, Wang J, Yan Q, Curtis D, Ning D, Van Nostrand JD, Wu L, Yang Y, Elias DA, Watson DB, Adams MWW, Fields MW, Alm EJ, Hazen TC, Adams PD, Arkin AP, Zhou J.

MBio. 2018 Feb 20;9(1). pii: e02435-17. doi: 10.1128/mBio.02435-17.

8.

Correction: Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations.

Gu Y, Van Nostrand JD, Wu L, He Z, Qin Y, Zhao FJ, Zhou J.

PLoS One. 2017 Dec 7;12(12):e0189656. doi: 10.1371/journal.pone.0189656. eCollection 2017.

9.

Diversity and Structure of Diazotrophic Communities in Mangrove Rhizosphere, Revealed by High-Throughput Sequencing.

Zhang Y, Yang Q, Ling J, Van Nostrand JD, Shi Z, Zhou J, Dong J.

Front Microbiol. 2017 Oct 18;8:2032. doi: 10.3389/fmicb.2017.02032. eCollection 2017.

10.

Divergent Responses of Forest Soil Microbial Communities under Elevated CO2 in Different Depths of Upper Soil Layers.

Yu H, He Z, Wang A, Xie J, Wu L, Van Nostrand JD, Jin D, Shao Z, Schadt CW, Zhou J, Deng Y.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e01694-17. doi: 10.1128/AEM.01694-17. Print 2018 Jan 1.

11.

Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment.

Yang Z, Yang S, Van Nostrand JD, Zhou J, Fang W, Qi Q, Liu Y, Wullschleger SD, Liang L, Graham DE, Yang Y, Gu B.

Front Microbiol. 2017 Sep 19;8:1741. doi: 10.3389/fmicb.2017.01741. eCollection 2017.

12.

Cas9 Nickase-Assisted RNA Repression Enables Stable and Efficient Manipulation of Essential Metabolic Genes in Clostridium cellulolyticum.

Xu T, Li Y, He Z, Van Nostrand JD, Zhou J.

Front Microbiol. 2017 Sep 7;8:1744. doi: 10.3389/fmicb.2017.01744. eCollection 2017.

13.

Taxonomic and Functional Analyses of the Supragingival Microbiome from Caries-Affected and Caries-Free Hosts.

He J, Tu Q, Ge Y, Qin Y, Cui B, Hu X, Wang Y, Deng Y, Wang K, Van Nostrand JD, Li J, Zhou J, Li Y, Zhou X.

Microb Ecol. 2018 Feb;75(2):543-554. doi: 10.1007/s00248-017-1056-1. Epub 2017 Sep 20.

PMID:
28932895
14.

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence.

Colin Y, Nicolitch O, Van Nostrand JD, Zhou JZ, Turpault MP, Uroz S.

Sci Rep. 2017 Aug 29;7(1):9604. doi: 10.1038/s41598-017-07639-1.

15.

Contradictory effects of silver nanoparticles on activated sludge wastewater treatment.

Sheng Z, Van Nostrand JD, Zhou J, Liu Y.

J Hazard Mater. 2018 Jan 5;341:448-456. doi: 10.1016/j.jhazmat.2017.07.051. Epub 2017 Aug 2.

PMID:
28830010
16.

Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil.

Yuan MM, Zhang J, Xue K, Wu L, Deng Y, Deng J, Hale L, Zhou X, He Z, Yang Y, Van Nostrand JD, Schuur EAG, Konstantinidis KT, Penton CR, Cole JR, Tiedje JM, Luo Y, Zhou J.

Glob Chang Biol. 2018 Jan;24(1):297-307. doi: 10.1111/gcb.13820. Epub 2017 Sep 1.

PMID:
28715138
17.

Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment.

Wang Y, Zhang R, He Z, Van Nostrand JD, Zheng Q, Zhou J, Jiao N.

Front Microbiol. 2017 Jun 21;8:1153. doi: 10.3389/fmicb.2017.01153. eCollection 2017.

18.

Interconnection of Key Microbial Functional Genes for Enhanced Benzo[a]pyrene Biodegradation in Sediments by Microbial Electrochemistry.

Yan Z, He Y, Cai H, Van Nostrand JD, He Z, Zhou J, Krumholz LR, Jiang HL.

Environ Sci Technol. 2017 Aug 1;51(15):8519-8529. doi: 10.1021/acs.est.7b00209. Epub 2017 Jul 14.

PMID:
28677976
19.

Analysis of the functional gene structure and metabolic potential of microbial community in high arsenic groundwater.

Li P, Jiang Z, Wang Y, Deng Y, Van Nostrand JD, Yuan T, Liu H, Wei D, Zhou J.

Water Res. 2017 Oct 15;123:268-276. doi: 10.1016/j.watres.2017.06.053. Epub 2017 Jun 21.

PMID:
28672211
20.

Correspondence: Reply to 'Analytical flaws in a continental-scale forest soil microbial diversity study'.

Zhou J, Deng Y, Shen L, Wen C, Yan Q, Ning D, Qin Y, Xue K, Wu L, He Z, Voordeckers JW, Van Nostrand JD, Buzzard V, Michaletz ST, Enquist BJ, Weiser MD, Kaspari M, Waide R, Yang Y, Brown JH.

Nat Commun. 2017 Jun 6;8:15583. doi: 10.1038/ncomms15583. No abstract available.

21.

President's Message

Van Nostrand J.

Okla Nurse. 2017 Jun;62(2):1-2. No abstract available.

PMID:
30462414
22.

Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling.

Wu L, Yang Y, Wang S, Yue H, Lin Q, Hu Y, He Z, Van Nostrand JD, Hale L, Li X, Gilbert JA, Zhou J.

ISME J. 2017 Sep;11(9):2102-2111. doi: 10.1038/ismej.2017.75. Epub 2017 May 23.

23.

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform.

Wen C, Wu L, Qin Y, Van Nostrand JD, Ning D, Sun B, Xue K, Liu F, Deng Y, Liang Y, Zhou J.

PLoS One. 2017 Apr 28;12(4):e0176716. doi: 10.1371/journal.pone.0176716. eCollection 2017.

24.

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China).

Yan Q, Stegen JC, Yu Y, Deng Y, Li X, Wu S, Dai L, Zhang X, Li J, Wang C, Ni J, Li X, Hu H, Xiao F, Feng W, Ning D, He Z, Van Nostrand JD, Wu L, Zhou J.

Mol Ecol. 2017 Jul;26(14):3839-3850. doi: 10.1111/mec.14151. Epub 2017 May 21.

PMID:
28437572
25.

Warming enhances old organic carbon decomposition through altering functional microbial communities.

Cheng L, Zhang N, Yuan M, Xiao J, Qin Y, Deng Y, Tu Q, Xue K, Van Nostrand JD, Wu L, He Z, Zhou X, Leigh MB, Konstantinidis KT, Schuur EA, Luo Y, Tiedje JM, Zhou J.

ISME J. 2017 Aug;11(8):1825-1835. doi: 10.1038/ismej.2017.48. Epub 2017 Apr 21.

26.

Elucidation of the methanogenic potential from coalbed microbial communities amended with volatile fatty acids.

Lyles CN, Parisi VA, Beasley WH, Van Nostrand JD, Zhou J, Suflita JM.

FEMS Microbiol Ecol. 2017 Apr 1;93(4). doi: 10.1093/femsec/fix040.

27.

Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer.

Zhang P, He Z, Van Nostrand JD, Qin Y, Deng Y, Wu L, Tu Q, Wang J, Schadt CW, W Fields M, Hazen TC, Arkin AP, Stahl DA, Zhou J.

Environ Sci Technol. 2017 Apr 4;51(7):3609-3620. doi: 10.1021/acs.est.6b02980. Epub 2017 Mar 16.

PMID:
28300407
28.

President's Message.

Van Nostrand J.

Okla Nurse. 2017 Mar-May;62(1):1. No abstract available.

PMID:
30462416
29.

The p53 family members have distinct roles during mammalian embryonic development.

Van Nostrand JL, Bowen ME, Vogel H, Barna M, Attardi LD.

Cell Death Differ. 2017 Apr;24(4):575-579. doi: 10.1038/cdd.2016.128. Epub 2017 Feb 17.

30.

The Shifts of Diazotrophic Communities in Spring and Summer Associated with Coral Galaxea astreata, Pavona decussata, and Porites lutea.

Zhang Y, Yang Q, Ling J, Van Nostrand JD, Shi Z, Zhou J, Dong J.

Front Microbiol. 2016 Nov 22;7:1870. eCollection 2016.

31.

President's Message.

Van Nostrand J.

Okla Nurse. 2016 Dec-2017 Jan-Feb;61(4):1. No abstract available.

PMID:
30462420
32.

Taxonomic and Functional Diversity of Soil and Hypolithic Microbial Communities in Miers Valley, McMurdo Dry Valleys, Antarctica.

Wei ST, Lacap-Bugler DC, Lau MC, Caruso T, Rao S, de Los Rios A, Archer SK, Chiu JM, Higgins C, Van Nostrand JD, Zhou J, Hopkins DW, Pointing SB.

Front Microbiol. 2016 Oct 20;7:1642. eCollection 2016.

33.

Anaerobic Disposal of Arsenic-Bearing Wastes Results in Low Microbially Mediated Arsenic Volatilization.

Webster TM, Reddy RR, Tan JY, Van Nostrand JD, Zhou J, Hayes KF, Raskin L.

Environ Sci Technol. 2016 Oct 7. [Epub ahead of print]

PMID:
27715012
34.

A comprehensive insight into functional profiles of free-living microbial community responses to a toxic Akashiwo sanguinea bloom.

Yang C, Li Y, Zhou Y, Lei X, Zheng W, Tian Y, Van Nostrand JD, He Z, Wu L, Zhou J, Zheng T.

Sci Rep. 2016 Oct 5;6:34645. doi: 10.1038/srep34645.

35.

The shift of microbial communities and their roles in sulfur and iron cycling in a copper ore bioleaching system.

Niu J, Deng J, Xiao Y, He Z, Zhang X, Van Nostrand JD, Liang Y, Deng Y, Liu X, Yin H.

Sci Rep. 2016 Oct 4;6:34744. doi: 10.1038/srep34744.

36.

Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming.

Xue K, Yuan MM, Xie J, Li D, Qin Y, Hale LE, Wu L, Deng Y, He Z, Van Nostrand JD, Luo Y, Tiedje JM, Zhou J.

MBio. 2016 Sep 27;7(5). pii: e00976-16. doi: 10.1128/mBio.00976-16.

37.

Inhibition of acetyl-CoA carboxylase suppresses fatty acid synthesis and tumor growth of non-small-cell lung cancer in preclinical models.

Svensson RU, Parker SJ, Eichner LJ, Kolar MJ, Wallace M, Brun SN, Lombardo PS, Van Nostrand JL, Hutchins A, Vera L, Gerken L, Greenwood J, Bhat S, Harriman G, Westlin WF, Harwood HJ Jr, Saghatelian A, Kapeller R, Metallo CM, Shaw RJ.

Nat Med. 2016 Oct;22(10):1108-1119. doi: 10.1038/nm.4181. Epub 2016 Sep 19.

38.

Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain.

Shen C, Shi Y, Ni Y, Deng Y, Van Nostrand JD, He Z, Zhou J, Chu H.

Front Microbiol. 2016 Jul 29;7:1184. doi: 10.3389/fmicb.2016.01184. eCollection 2016.

39.

Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah.

Lindsay MR, Anderson C, Fox N, Scofield G, Allen J, Anderson E, Bueter L, Poudel S, Sutherland K, Munson-McGee JH, Van Nostrand JD, Zhou J, Spear JR, Baxter BK, Lageson DR, Boyd ES.

Geobiology. 2017 Jan;15(1):131-145. doi: 10.1111/gbi.12201. Epub 2016 Jul 14.

PMID:
27418462
40.

Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning.

Xue K, Xie J, Zhou A, Liu F, Li D, Wu L, Deng Y, He Z, Van Nostrand JD, Luo Y, Zhou J.

Front Microbiol. 2016 May 6;7:668. doi: 10.3389/fmicb.2016.00668. eCollection 2016.

41.

Environmental filtering decreases with fish development for the assembly of gut microbiota.

Yan Q, Li J, Yu Y, Wang J, He Z, Van Nostrand JD, Kempher ML, Wu L, Wang Y, Liao L, Li X, Wu S, Ni J, Wang C, Zhou J.

Environ Microbiol. 2016 Dec;18(12):4739-4754. doi: 10.1111/1462-2920.13365. Epub 2016 Jun 8.

PMID:
27130138
42.

Microbial communities and arsenic biogeochemistry at the outflow of an alkaline sulfide-rich hot spring.

Jiang Z, Li P, Van Nostrand JD, Zhang P, Zhou J, Wang Y, Dai X, Zhang R, Jiang D, Wang Y.

Sci Rep. 2016 Apr 29;6:25262. doi: 10.1038/srep25262.

43.

Biogeographic patterns of soil diazotrophic communities across six forests in North America.

Tu Q, Deng Y, Yan Q, Shen L, Lin L, He Z, Wu L, Van Nostrand JD, Buzzard V, Michaletz ST, Enquist BJ, Weiser MD, Kaspari M, Waide RB, Brown JH, Zhou J.

Mol Ecol. 2016 Jun;25(12):2937-48. doi: 10.1111/mec.13651. Epub 2016 May 21. Erratum in: Mol Ecol. 2017 Apr;26(8):2405.

PMID:
27085668
44.

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community.

Hemme CL, Green SJ, Rishishwar L, Prakash O, Pettenato A, Chakraborty R, Deutschbauer AM, Van Nostrand JD, Wu L, He Z, Jordan IK, Hazen TC, Arkin AP, Kostka JE, Zhou J.

MBio. 2016 Apr 5;7(2):e02234-15. doi: 10.1128/mBio.02234-15.

45.

Preliminary analysis of salivary microbiome and their potential roles in oral lichen planus.

Wang K, Lu W, Tu Q, Ge Y, He J, Zhou Y, Gou Y, Van Nostrand JD, Qin Y, Li J, Zhou J, Li Y, Xiao L, Zhou X.

Sci Rep. 2016 Mar 10;6:22943. doi: 10.1038/srep22943.

46.

AMPK governs lineage specification through Tfeb-dependent regulation of lysosomes.

Young NP, Kamireddy A, Van Nostrand JL, Eichner LJ, Shokhirev MN, Dayn Y, Shaw RJ.

Genes Dev. 2016 Mar 1;30(5):535-52. doi: 10.1101/gad.274142.115.

47.

Hybridization of Environmental Microbial Community Nucleic Acids by GeoChip.

Van Nostrand JD, Yin H, Wu L, Yuan T, Zhou J.

Methods Mol Biol. 2016;1399:183-96. doi: 10.1007/978-1-4939-3369-3_11.

PMID:
26791504
48.

The functional gene composition and metabolic potential of coral-associated microbial communities.

Zhang Y, Ling J, Yang Q, Wen C, Yan Q, Sun H, Van Nostrand JD, Shi Z, Zhou J, Dong J.

Sci Rep. 2015 Nov 5;5:16191. doi: 10.1038/srep16191.

49.

Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China's grasslands.

Wang X, Van Nostrand JD, Deng Y, Lü X, Wang C, Zhou J, Han X.

FEMS Microbiol Ecol. 2015 Dec;91(12). pii: fiv133. doi: 10.1093/femsec/fiv133. Epub 2015 Oct 29.

PMID:
26519142
50.

GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping.

Zhao M, Wang F, Liu S, Xue K, Liang Y, Bai S, He Z, Van Nostrand JD, Zhou J, Yang Y, Sun B.

Genom Data. 2014 Jun 11;2:166-9. doi: 10.1016/j.gdata.2014.06.002. eCollection 2014 Dec.

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