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Items: 1 to 50 of 123

1.

Emended description of Gardnerella vaginalis and description of Gardnerella leopoldii sp. nov., Gardnerella piotii sp. nov. and Gardnerella swidsinskii sp. nov., with delineation of 13 genomic species within the genus Gardnerella.

Vaneechoutte M, Guschin A, Van Simaey L, Gansemans Y, Van Nieuwerburgh F, Cools P.

Int J Syst Evol Microbiol. 2019 Jan 16. doi: 10.1099/ijsem.0.003200. [Epub ahead of print]

PMID:
30648938
2.

The presence of extracellular microRNAs in the media of cultured Drosophila cells.

Van den Brande S, Gijbels M, Wynant N, Santos D, Mingels L, Gansemans Y, Van Nieuwerburgh F, Vanden Broeck J.

Sci Rep. 2018 Nov 23;8(1):17312. doi: 10.1038/s41598-018-35531-z.

3.

TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets.

Decaesteker B, Denecker G, Van Neste C, Dolman EM, Van Loocke W, Gartlgruber M, Nunes C, De Vloed F, Depuydt P, Verboom K, Rombaut D, Loontiens S, De Wyn J, Kholosy WM, Koopmans B, Essing AHW, Herrmann C, Dreidax D, Durinck K, Deforce D, van Nieuwerburgh F, Henssen A, Versteeg R, Boeva V, Schleiermacher G, van Nes J, Mestdagh P, Vanhauwaert S, Schulte JH, Westermann F, Molenaar JJ, De Preter K, Speleman F.

Nat Commun. 2018 Nov 19;9(1):4866. doi: 10.1038/s41467-018-06699-9.

4.

Forensic tri-allelic SNP genotyping using nanopore sequencing.

Cornelis S, Gansemans Y, Vander Plaetsen AS, Weymaere J, Willems S, Deforce D, Van Nieuwerburgh F.

Forensic Sci Int Genet. 2019 Jan;38:204-210. doi: 10.1016/j.fsigen.2018.11.012. Epub 2018 Nov 12.

5.

The transcriptome of the marine calanoid copepod Temora longicornis under heat stress and recovery.

Semmouri I, Asselman J, Van Nieuwerburgh F, Deforce D, Janssen CR, De Schamphelaere KAC.

Mar Environ Res. 2019 Jan;143:10-23. doi: 10.1016/j.marenvres.2018.10.017. Epub 2018 Nov 1.

PMID:
30415781
6.

Transcriptional landscape changes during human embryonic stem cell derivation.

Warrier S, Taelman J, Tilleman L, Van der Jeught M, Duggal G, Lierman S, Popovic M, Van Soom A, Peelman L, Van Nieuwerburgh F, Deforce D, Chuva de Sousa Lopes SM, De Sutter P, Heindryckx B.

Mol Hum Reprod. 2018 Nov 1;24(11):543-555. doi: 10.1093/molehr/gay039.

PMID:
30239859
7.

Coumarin Reduces Virulence and Biofilm Formation in Pseudomonas aeruginosa by Affecting Quorum Sensing, Type III Secretion and C-di-GMP Levels.

Zhang Y, Sass A, Van Acker H, Wille J, Verhasselt B, Van Nieuwerburgh F, Kaever V, Crabbé A, Coenye T.

Front Microbiol. 2018 Aug 21;9:1952. doi: 10.3389/fmicb.2018.01952. eCollection 2018.

8.

Influence of microbiota in the susceptibility of parasitic wasps to abamectin insecticide: deep sequencing, esterase and toxicity tests.

Fernández MDM, Meeus I, Billiet A, Van Nieuwerburgh F, Deforce D, Vandamme P, Viñuela E, Smagghe G.

Pest Manag Sci. 2019 Jan;75(1):79-86. doi: 10.1002/ps.5195. Epub 2018 Oct 16.

PMID:
30178524
9.

Transgenerational Inheritance of DNA Hypomethylation in Daphnia magna in Response to Salinity Stress.

Jeremias G, Barbosa J, Marques SM, De Schamphelaere KAC, Van Nieuwerburgh F, Deforce D, Gonçalves FJM, Pereira JL, Asselman J.

Environ Sci Technol. 2018 Sep 4;52(17):10114-10123. doi: 10.1021/acs.est.8b03225. Epub 2018 Aug 24.

PMID:
30113818
10.

Photothermally Triggered Endosomal Escape and Its Influence on Transfection Efficiency of Gold-Functionalized JetPEI/pDNA Nanoparticles.

Vermeulen LMP, Fraire JC, Raes L, De Meester E, De Keulenaer S, Van Nieuwerburgh F, De Smedt S, Remaut K, Braeckmans K.

Int J Mol Sci. 2018 Aug 14;19(8). pii: E2400. doi: 10.3390/ijms19082400.

11.

Pre-clinical evaluation of second generation PIM inhibitors for the treatment of T-cell acute lymphoblastic leukemia and lymphoma.

De Smedt R, Peirs S, Morscio J, Matthijssens F, Roels J, Reunes L, Lintermans B, Goossens S, Lammens T, Van Roy N, Touzart A, Jenni S, Tsai YC, Lovisa F, Mussolin L, Serafin V, Van Nieuwerburgh F, Deforce D, Uyttebroeck A, Tousseyn T, Burkhardt B, Klapper W, De Moerloose B, Benoit Y, Macintyre E, Bourquin JP, Basso G, Accordi B, Bornhauser B, Meijerink J, Vandenberghe P, Van Vlierberghe P.

Haematologica. 2019 Jan;104(1):e17-e20. doi: 10.3324/haematol.2018.199257. Epub 2018 Aug 3. No abstract available.

12.

A prokaryotic-eukaryotic relation in the fat body of Bombus terrestris.

Parmentier A, Billiet A, Smagghe G, Vandamme P, Deforce D, Van Nieuwerburgh F, Meeus I.

Environ Microbiol Rep. 2018 Dec;10(6):644-650. doi: 10.1111/1758-2229.12673. Epub 2018 Sep 9.

PMID:
30066470
13.

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.

Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA.

Cell. 2018 Jul 12;174(2):448-464.e24. doi: 10.1016/j.cell.2018.06.033.

PMID:
30007417
14.

Multiplex STR amplification sensitivity in a silicon microchip.

Cornelis S, Fauvart M, Gansemans Y, Vander Plaetsen AS, Colle F, Wiederkehr RS, Deforce D, Stakenborg T, Van Nieuwerburgh F.

Sci Rep. 2018 Jun 29;8(1):9853. doi: 10.1038/s41598-018-28229-9.

15.

Genetic characterization and therapeutic targeting of MYC-rearranged T cell acute lymphoblastic leukaemia.

Milani G, Matthijssens F, Van Loocke W, Durinck K, Roels J, Peirs S, Thénoz M, Pieters T, Reunes L, Lintermans B, Vandamme N, Lammens T, Van Roy N, Van Nieuwerburgh F, Deforce D, Schwab C, Raimondi S, Dalla Pozza L, Carroll AJ 3rd, De Moerloose B, Benoit Y, Goossens S, Berx G, Harrison CJ, Basso G, Cavé H, Sutton R, Asnafi V, Meijerink J, Mullighan C, Loh M, Van Vlierberghe P.

Br J Haematol. 2018 Jun 25. doi: 10.1111/bjh.15425. [Epub ahead of print] No abstract available.

PMID:
29938777
16.

Analysis of shared heritability in common disorders of the brain.

Brainstorm Consortium, Anttila V, Bulik-Sullivan B, Finucane HK, Walters RK, Bras J, Duncan L, Escott-Price V, Falcone GJ, Gormley P, Malik R, Patsopoulos NA, Ripke S, Wei Z, Yu D, Lee PH, Turley P, Grenier-Boley B, Chouraki V, Kamatani Y, Berr C, Letenneur L, Hannequin D, Amouyel P, Boland A, Deleuze JF, Duron E, Vardarajan BN, Reitz C, Goate AM, Huentelman MJ, Kamboh MI, Larson EB, Rogaeva E, St George-Hyslop P, Hakonarson H, Kukull WA, Farrer LA, Barnes LL, Beach TG, Demirci FY, Head E, Hulette CM, Jicha GA, Kauwe JSK, Kaye JA, Leverenz JB, Levey AI, Lieberman AP, Pankratz VS, Poon WW, Quinn JF, Saykin AJ, Schneider LS, Smith AG, Sonnen JA, Stern RA, Van Deerlin VM, Van Eldik LJ, Harold D, Russo G, Rubinsztein DC, Bayer A, Tsolaki M, Proitsi P, Fox NC, Hampel H, Owen MJ, Mead S, Passmore P, Morgan K, Nöthen MM, Rossor M, Lupton MK, Hoffmann P, Kornhuber J, Lawlor B, McQuillin A, Al-Chalabi A, Bis JC, Ruiz A, Boada M, Seshadri S, Beiser A, Rice K, van der Lee SJ, De Jager PL, Geschwind DH, Riemenschneider M, Riedel-Heller S, Rotter JI, Ransmayr G, Hyman BT, Cruchaga C, Alegret M, Winsvold B, Palta P, Farh KH, Cuenca-Leon E, Furlotte N, Kurth T, Ligthart L, Terwindt GM, Freilinger T, Ran C, Gordon SD, Borck G, Adams HHH, Lehtimäki T, Wedenoja J, Buring JE, Schürks M, Hrafnsdottir M, Hottenga JJ, Penninx B, Artto V, Kaunisto M, Vepsäläinen S, Martin NG, Montgomery GW, Kurki MI, Hämäläinen E, Huang H, Huang J, Sandor C, Webber C, Muller-Myhsok B, Schreiber S, Salomaa V, Loehrer E, Göbel H, Macaya A, Pozo-Rosich P, Hansen T, Werge T, Kaprio J, Metspalu A, Kubisch C, Ferrari MD, Belin AC, van den Maagdenberg AMJM, Zwart JA, Boomsma D, Eriksson N, Olesen J, Chasman DI, Nyholt DR, Avbersek A, Baum L, Berkovic S, Bradfield J, Buono R, Catarino CB, Cossette P, De Jonghe P, Depondt C, Dlugos D, Ferraro TN, French J, Hjalgrim H, Jamnadas-Khoda J, Kälviäinen R, Kunz WS, Lerche H, Leu C, Lindhout D, Lo W, Lowenstein D, McCormack M, Møller RS, Molloy A, Ng PW, Oliver K, Privitera M, Radtke R, Ruppert AK, Sander T, Schachter S, Schankin C, Scheffer I, Schoch S, Sisodiya SM, Smith P, Sperling M, Striano P, Surges R, Thomas GN, Visscher F, Whelan CD, Zara F, Heinzen EL, Marson A, Becker F, Stroink H, Zimprich F, Gasser T, Gibbs R, Heutink P, Martinez M, Morris HR, Sharma M, Ryten M, Mok KY, Pulit S, Bevan S, Holliday E, Attia J, Battey T, Boncoraglio G, Thijs V, Chen WM, Mitchell B, Rothwell P, Sharma P, Sudlow C, Vicente A, Markus H, Kourkoulis C, Pera J, Raffeld M, Silliman S, Boraska Perica V, Thornton LM, Huckins LM, William Rayner N, Lewis CM, Gratacos M, Rybakowski F, Keski-Rahkonen A, Raevuori A, Hudson JI, Reichborn-Kjennerud T, Monteleone P, Karwautz A, Mannik K, Baker JH, O'Toole JK, Trace SE, Davis OSP, Helder SG, Ehrlich S, Herpertz-Dahlmann B, Danner UN, van Elburg AA, Clementi M, Forzan M, Docampo E, Lissowska J, Hauser J, Tortorella A, Maj M, Gonidakis F, Tziouvas K, Papezova H, Yilmaz Z, Wagner G, Cohen-Woods S, Herms S, Julià A, Rabionet R, Dick DM, Ripatti S, Andreassen OA, Espeseth T, Lundervold AJ, Steen VM, Pinto D, Scherer SW, Aschauer H, Schosser A, Alfredsson L, Padyukov L, Halmi KA, Mitchell J, Strober M, Bergen AW, Kaye W, Szatkiewicz JP, Cormand B, Ramos-Quiroga JA, Sánchez-Mora C, Ribasés M, Casas M, Hervas A, Arranz MJ, Haavik J, Zayats T, Johansson S, Williams N, Dempfle A, Rothenberger A, Kuntsi J, Oades RD, Banaschewski T, Franke B, Buitelaar JK, Arias Vasquez A, Doyle AE, Reif A, Lesch KP, Freitag C, Rivero O, Palmason H, Romanos M, Langley K, Rietschel M, Witt SH, Dalsgaard S, Børglum AD, Waldman I, Wilmot B, Molly N, Bau CHD, Crosbie J, Schachar R, Loo SK, McGough JJ, Grevet EH, Medland SE, Robinson E, Weiss LA, Bacchelli E, Bailey A, Bal V, Battaglia A, Betancur C, Bolton P, Cantor R, Celestino-Soper P, Dawson G, De Rubeis S, Duque F, Green A, Klauck SM, Leboyer M, Levitt P, Maestrini E, Mane S, De-Luca DM, Parr J, Regan R, Reichenberg A, Sandin S, Vorstman J, Wassink T, Wijsman E, Cook E, Santangelo S, Delorme R, Rogé B, Magalhaes T, Arking D, Schulze TG, Thompson RC, Strohmaier J, Matthews K, Melle I, Morris D, Blackwood D, McIntosh A, Bergen SE, Schalling M, Jamain S, Maaser A, Fischer SB, Reinbold CS, Fullerton JM, Guzman-Parra J, Mayoral F, Schofield PR, Cichon S, Mühleisen TW, Degenhardt F, Schumacher J, Bauer M, Mitchell PB, Gershon ES, Rice J, Potash JB, Zandi PP, Craddock N, Ferrier IN, Alda M, Rouleau GA, Turecki G, Ophoff R, Pato C, Anjorin A, Stahl E, Leber M, Czerski PM, Cruceanu C, Jones IR, Posthuma D, Andlauer TFM, Forstner AJ, Streit F, Baune BT, Air T, Sinnamon G, Wray NR, MacIntyre DJ, Porteous D, Homuth G, Rivera M, Grove J, Middeldorp CM, Hickie I, Pergadia M, Mehta D, Smit JH, Jansen R, de Geus E, Dunn E, Li QS, Nauck M, Schoevers RA, Beekman AT, Knowles JA, Viktorin A, Arnold P, Barr CL, Bedoya-Berrio G, Bienvenu OJ, Brentani H, Burton C, Camarena B, Cappi C, Cath D, Cavallini M, Cusi D, Darrow S, Denys D, Derks EM, Dietrich A, Fernandez T, Figee M, Freimer N, Gerber G, Grados M, Greenberg E, Hanna GL, Hartmann A, Hirschtritt ME, Hoekstra PJ, Huang A, Huyser C, Illmann C, Jenike M, Kuperman S, Leventhal B, Lochner C, Lyon GJ, Macciardi F, Madruga-Garrido M, Malaty IA, Maras A, McGrath L, Miguel EC, Mir P, Nestadt G, Nicolini H, Okun MS, Pakstis A, Paschou P, Piacentini J, Pittenger C, Plessen K, Ramensky V, Ramos EM, Reus V, Richter MA, Riddle MA, Robertson MM, Roessner V, Rosário M, Samuels JF, Sandor P, Stein DJ, Tsetsos F, Van Nieuwerburgh F, Weatherall S, Wendland JR, Wolanczyk T, Worbe Y, Zai G, Goes FS, McLaughlin N, Nestadt PS, Grabe HJ, Depienne C, Konkashbaev A, Lanzagorta N, Valencia-Duarte A, Bramon E, Buccola N, Cahn W, Cairns M, Chong SA, Cohen D, Crespo-Facorro B, Crowley J, Davidson M, DeLisi L, Dinan T, Donohoe G, Drapeau E, Duan J, Haan L, Hougaard D, Karachanak-Yankova S, Khrunin A, Klovins J, Kučinskas V, Lee Chee Keong J, Limborska S, Loughland C, Lönnqvist J, Maher B, Mattheisen M, McDonald C, Murphy KC, Nenadic I, van Os J, Pantelis C, Pato M, Petryshen T, Quested D, Roussos P, Sanders AR, Schall U, Schwab SG, Sim K, So HC, Stögmann E, Subramaniam M, Toncheva D, Waddington J, Walters J, Weiser M, Cheng W, Cloninger R, Curtis D, Gejman PV, Henskens F, Mattingsdal M, Oh SY, Scott R, Webb B, Breen G, Churchhouse C, Bulik CM, Daly M, Dichgans M, Faraone SV, Guerreiro R, Holmans P, Kendler KS, Koeleman B, Mathews CA, Price A, Scharf J, Sklar P, Williams J, Wood NW, Cotsapas C, Palotie A, Smoller JW, Sullivan P, Rosand J, Corvin A, Neale BM, Schott JM, Anney R, Elia J, Grigoroiu-Serbanescu M, Edenberg HJ, Murray R.

Science. 2018 Jun 22;360(6395). pii: eaap8757. doi: 10.1126/science.aap8757.

17.

Effect of β-adrenergic receptor agents on cardiac structure and function and whole-body gene expression in Daphnia magna.

Jeong TY, Asselman J, De Schamphelaere KAC, Van Nieuwerburgh F, Deforce D, Kim SD.

Environ Pollut. 2018 Oct;241:869-878. doi: 10.1016/j.envpol.2018.06.026. Epub 2018 Jun 12.

PMID:
29913414
18.

Decreased susceptibility of Streptococcus anginosus to vancomycin in a multispecies biofilm is due to increased thickness of the cell wall.

Tavernier S, Sass A, De Bruyne M, Baeke F, De Rycke R, Crabbé A, Vandecandelaere I, Van Nieuwerburgh F, Coenye T.

J Antimicrob Chemother. 2018 Sep 1;73(9):2323-2330. doi: 10.1093/jac/dky216.

PMID:
29901811
19.

Chromosomal mosaicism in human blastocysts: the ultimate challenge of preimplantation genetic testing?

Popovic M, Dheedene A, Christodoulou C, Taelman J, Dhaenens L, Van Nieuwerburgh F, Deforce D, Van den Abbeel E, De Sutter P, Menten B, Heindryckx B.

Hum Reprod. 2018 Jul 1;33(7):1342-1354. doi: 10.1093/humrep/dey106.

PMID:
29796631
20.

Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods.

Deleye L, Gansemans Y, De Coninck D, Van Nieuwerburgh F, Deforce D.

PLoS One. 2018 Apr 26;13(4):e0196334. doi: 10.1371/journal.pone.0196334. eCollection 2018.

21.

Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background.

Ghimire S, Van der Jeught M, Neupane J, Roost MS, Anckaert J, Popovic M, Van Nieuwerburgh F, Mestdagh P, Vandesompele J, Deforce D, Menten B, Chuva de Sousa Lopes S, De Sutter P, Heindryckx B.

Sci Rep. 2018 Apr 12;8(1):5884. doi: 10.1038/s41598-018-24051-5.

22.

Proteins involved in embryo-maternal interaction around the signalling of maternal recognition of pregnancy in the horse.

Smits K, Willems S, Van Steendam K, Van De Velde M, De Lange V, Ververs C, Roels K, Govaere J, Van Nieuwerburgh F, Peelman L, Deforce D, Van Soom A.

Sci Rep. 2018 Mar 27;8(1):5249. doi: 10.1038/s41598-018-23537-6.

23.

The Small RNA ncS35 Regulates Growth in Burkholderia cenocepacia J2315.

Kiekens S, Sass A, Van Nieuwerburgh F, Deforce D, Coenye T.

mSphere. 2018 Jan 10;3(1). pii: e00579-17. doi: 10.1128/mSphere.00579-17. eCollection 2018 Jan-Feb.

24.

Short Tandem Repeat analysis after Whole Genome Amplification of single B-lymphoblastoid cells.

Deleye L, Vander Plaetsen AS, Weymaere J, Deforce D, Van Nieuwerburgh F.

Sci Rep. 2018 Jan 19;8(1):1255. doi: 10.1038/s41598-018-19509-5.

25.

Elucidation of the mechanism behind the potentiating activity of baicalin against Burkholderia cenocepacia biofilms.

Slachmuylders L, Van Acker H, Brackman G, Sass A, Van Nieuwerburgh F, Coenye T.

PLoS One. 2018 Jan 2;13(1):e0190533. doi: 10.1371/journal.pone.0190533. eCollection 2018.

26.

The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis.

Aguilar-Ayala DA, Tilleman L, Van Nieuwerburgh F, Deforce D, Palomino JC, Vandamme P, Gonzalez-Y-Merchand JA, Martin A.

Sci Rep. 2017 Dec 15;7(1):17665. doi: 10.1038/s41598-017-17751-x.

27.

Discovery of the leinamycin family of natural products by mining actinobacterial genomes.

Pan G, Xu Z, Guo Z, Hindra, Ma M, Yang D, Zhou H, Gansemans Y, Zhu X, Huang Y, Zhao LX, Jiang Y, Cheng J, Van Nieuwerburgh F, Suh JW, Duan Y, Shen B.

Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):E11131-E11140. doi: 10.1073/pnas.1716245115. Epub 2017 Dec 11.

28.

Genome-Wide Copy Number Alteration Detection in Preimplantation Genetic Diagnosis.

Deleye L, De Coninck D, Deforce D, Van Nieuwerburgh F.

Methods Mol Biol. 2018;1712:27-42. doi: 10.1007/978-1-4939-7514-3_3.

PMID:
29224066
29.

STR profiling and Copy Number Variation analysis on single, preserved cells using current Whole Genome Amplification methods.

Vander Plaetsen AS, Deleye L, Cornelis S, Tilleman L, Van Nieuwerburgh F, Deforce D.

Sci Rep. 2017 Dec 7;7(1):17189. doi: 10.1038/s41598-017-17525-5.

30.

Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics.

Rovetto F, Carlier A, Van den Abeele AM, Illeghems K, Van Nieuwerburgh F, Cocolin L, Houf K.

PLoS One. 2017 Jul 3;12(7):e0180493. doi: 10.1371/journal.pone.0180493. eCollection 2017.

31.

Microbial community profiling of fresh basil and pitfalls in taxonomic assignment of enterobacterial pathogenic species based upon 16S rRNA amplicon sequencing.

Ceuppens S, De Coninck D, Bottledoorn N, Van Nieuwerburgh F, Uyttendaele M.

Int J Food Microbiol. 2017 Sep 18;257:148-156. doi: 10.1016/j.ijfoodmicro.2017.06.016. Epub 2017 Jun 17.

PMID:
28666129
32.

Performance of four modern whole genome amplification methods for copy number variant detection in single cells.

Deleye L, Tilleman L, Vander Plaetsen AS, Cornelis S, Deforce D, Van Nieuwerburgh F.

Sci Rep. 2017 Jun 13;7(1):3422. doi: 10.1038/s41598-017-03711-y.

33.

Direct comparison of distinct naive pluripotent states in human embryonic stem cells.

Warrier S, Van der Jeught M, Duggal G, Tilleman L, Sutherland E, Taelman J, Popovic M, Lierman S, Chuva De Sousa Lopes S, Van Soom A, Peelman L, Van Nieuwerburgh F, De Coninck DIM, Menten B, Mestdagh P, Van de Sompele J, Deforce D, De Sutter P, Heindryckx B.

Nat Commun. 2017 Apr 21;8:15055. doi: 10.1038/ncomms15055.

34.

Metabolic activity, urease production, antibiotic resistance and virulence in dual species biofilms of Staphylococcus epidermidis and Staphylococcus aureus.

Vandecandelaere I, Van Nieuwerburgh F, Deforce D, Coenye T.

PLoS One. 2017 Mar 6;12(3):e0172700. doi: 10.1371/journal.pone.0172700. eCollection 2017.

35.

Forensic SNP Genotyping using Nanopore MinION Sequencing.

Cornelis S, Gansemans Y, Deleye L, Deforce D, Van Nieuwerburgh F.

Sci Rep. 2017 Feb 3;7:41759. doi: 10.1038/srep41759.

36.

Flagging False Positives Following Untargeted LC-MS Characterization of Histone Post-Translational Modification Combinations.

Willems S, Dhaenens M, Govaert E, De Clerck L, Meert P, Van Neste C, Van Nieuwerburgh F, Deforce D.

J Proteome Res. 2017 Feb 3;16(2):655-664. doi: 10.1021/acs.jproteome.6b00724. Epub 2016 Dec 7.

PMID:
28152592
37.

Epigenetic sampling effects: nephrectomy modifies the clear cell renal cell cancer methylome.

Van Neste C, Laird A, O'Mahony F, Van Criekinge W, Deforce D, Van Nieuwerburgh F, Powles T, Harrison DJ, Stewart GD, De Meyer T.

Cell Oncol (Dordr). 2017 Jun;40(3):293-297. doi: 10.1007/s13402-016-0313-5. Epub 2017 Jan 10.

PMID:
28074387
38.

Oncogenic ZEB2 activation drives sensitivity toward KDM1A inhibition in T-cell acute lymphoblastic leukemia.

Goossens S, Peirs S, Van Loocke W, Wang J, Takawy M, Matthijssens F, Sonderegger SE, Haigh K, Nguyen T, Vandamme N, Costa M, Carmichael C, Van Nieuwerburgh F, Deforce D, Kleifeld O, Curtis DJ, Berx G, Van Vlierberghe P, Haigh JJ.

Blood. 2017 Feb 23;129(8):981-990. doi: 10.1182/blood-2016-06-721191. Epub 2017 Jan 9.

39.

Strain Prioritization and Genome Mining for Enediyne Natural Products.

Yan X, Ge H, Huang T, Hindra, Yang D, Teng Q, Crnovčić I, Li X, Rudolf JD, Lohman JR, Gansemans Y, Zhu X, Huang Y, Zhao LX, Jiang Y, Van Nieuwerburgh F, Rader C, Duan Y, Shen B.

MBio. 2016 Dec 20;7(6). pii: e02104-16. doi: 10.1128/mBio.02104-16.

40.

RMNE calculation in forensic profiles with a high number of loci and allelic drop-outs using polynomial expansion.

Willems S, Cornelis S, Gansemans Y, Broeckx B, De Coninck DI, Van Neste C, Dhaenens M, Deforce D, Van Nieuwerburgh F.

Forensic Sci Int Genet. 2017 Jan;26:e14-e16. doi: 10.1016/j.fsigen.2016.10.020. Epub 2016 Nov 9. No abstract available.

PMID:
27856144
41.

Preimplantation genetic diagnosis for chromosomal rearrangements with the use of array comparative genomic hybridization at the blastocyst stage.

Christodoulou C, Dheedene A, Heindryckx B, van Nieuwerburgh F, Deforce D, De Sutter P, Menten B, Van den Abbeel E.

Fertil Steril. 2017 Jan;107(1):212-219.e3. doi: 10.1016/j.fertnstert.2016.09.045. Epub 2016 Oct 25.

PMID:
27793373
42.

Unique long non-coding RNA expression signature in ETV6/RUNX1-driven B-cell precursor acute lymphoblastic leukemia.

Ghazavi F, De Moerloose B, Van Loocke W, Wallaert A, Helsmoortel HH, Ferster A, Bakkus M, Plat G, Delabesse E, Uyttebroeck A, Van Nieuwerburgh F, Deforce D, Van Roy N, Speleman F, Benoit Y, Lammens T, Van Vlierberghe P.

Oncotarget. 2016 Nov 8;7(45):73769-73780. doi: 10.18632/oncotarget.12063.

43.

Performance of a TthPrimPol-based whole genome amplification kit for copy number alteration detection using massively parallel sequencing.

Deleye L, De Coninck D, Dheedene A, De Sutter P, Menten B, Deforce D, Van Nieuwerburgh F.

Sci Rep. 2016 Aug 22;6:31825. doi: 10.1038/srep31825.

44.

A different gut microbial community between larvae and adults of a wild bumblebee nest (Bombus pascuorum).

Parmentier A, Meeus I, Van Nieuwerburgh F, Deforce D, Vandamme P, Smagghe G.

Insect Sci. 2018 Feb;25(1):66-74. doi: 10.1111/1744-7917.12381. Epub 2016 Nov 7.

PMID:
27531583
45.

Assessing the impact of minimizing arginine conversion in fully defined SILAC culture medium in human embryonic stem cells.

Scheerlinck E, Van Steendam K, Daled S, Govaert E, Vossaert L, Meert P, Van Nieuwerburgh F, Van Soom A, Peelman L, De Sutter P, Heindryckx B, Dhaenens M, Deforce D.

Proteomics. 2016 Oct;16(20):2605-2614. doi: 10.1002/pmic.201600174. Epub 2016 Sep 12.

46.

Dynamic epigenetic changes to VHL occur with sunitinib in metastatic clear cell renal cancer.

Stewart GD, Powles T, Van Neste C, Meynert A, O'Mahony F, Laird A, Deforce D, Van Nieuwerburgh F, Trooskens G, Van Criekinge W, De Meyer T, Harrison DJ.

Oncotarget. 2016 May 3;7(18):25241-50. doi: 10.18632/oncotarget.8308.

47.

The Quorum Sensing Inhibitor Hamamelitannin Increases Antibiotic Susceptibility of Staphylococcus aureus Biofilms by Affecting Peptidoglycan Biosynthesis and eDNA Release.

Brackman G, Breyne K, De Rycke R, Vermote A, Van Nieuwerburgh F, Meyer E, Van Calenbergh S, Coenye T.

Sci Rep. 2016 Feb 1;6:20321. doi: 10.1038/srep20321.

48.

Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts.

Heras S, De Coninck DI, Van Poucke M, Goossens K, Bogado Pascottini O, Van Nieuwerburgh F, Deforce D, De Sutter P, Leroy JL, Gutierrez-Adan A, Peelman L, Van Soom A.

BMC Genomics. 2016 Jan 22;17:72. doi: 10.1186/s12864-016-2393-z.

49.

The Equine Embryo Influences Immune-Related Gene Expression in the Oviduct.

Smits K, De Coninck DI, Van Nieuwerburgh F, Govaere J, Van Poucke M, Peelman L, Deforce D, Van Soom A.

Biol Reprod. 2016 Feb;94(2):36. doi: 10.1095/biolreprod.115.136432. Epub 2016 Jan 6.

PMID:
26740593
50.

In vivo study of Dicer-2-mediated immune response of the small interfering RNA pathway upon systemic infections of virulent and avirulent viruses in Bombus terrestris.

Niu J, Smagghe G, De Coninck DI, Van Nieuwerburgh F, Deforce D, Meeus I.

Insect Biochem Mol Biol. 2016 Mar;70:127-37. doi: 10.1016/j.ibmb.2015.12.006. Epub 2015 Dec 19.

PMID:
26711439

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