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Items: 33

1.

Hub Protein Controversy: Taking a Closer Look at Plant Stress Response Hubs.

Vandereyken K, Van Leene J, De Coninck B, Cammue BPA.

Front Plant Sci. 2018 Jun 5;9:694. doi: 10.3389/fpls.2018.00694. eCollection 2018. Review.

2.

Recent Trends in Plant Protein Complex Analysis in a Developmental Context.

Bontinck M, Van Leene J, Gadeyne A, De Rybel B, Eeckhout D, Nelissen H, De Jaeger G.

Front Plant Sci. 2018 May 15;9:640. doi: 10.3389/fpls.2018.00640. eCollection 2018. Review.

3.

GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants.

Besbrugge N, Van Leene J, Eeckhout D, Cannoot B, Kulkarni SR, De Winne N, Persiau G, Van De Slijke E, Bontinck M, Aesaert S, Impens F, Gevaert K, Van Damme D, Van Lijsebettens M, Inzé D, Vandepoele K, Nelissen H, De Jaeger G.

Plant Physiol. 2018 Jun;177(2):447-464. doi: 10.1104/pp.18.00175. Epub 2018 Apr 20.

4.

The Mitochondrial DNA-Associated Protein SWIB5 Influences mtDNA Architecture and Homologous Recombination.

Blomme J, Van Aken O, Van Leene J, Jégu T, De Rycke R, De Bruyne M, Vercruysse J, Nolf J, Van Daele T, De Milde L, Vermeersch M, des Francs-Small CC, De Jaeger G, Benhamed M, Millar AH, Inzé D, Gonzalez N.

Plant Cell. 2017 May;29(5):1137-1156. doi: 10.1105/tpc.16.00899. Epub 2017 Apr 18.

5.

Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development.

Van Leene J, Blomme J, Kulkarni SR, Cannoot B, De Winne N, Eeckhout D, Persiau G, Van De Slijke E, Vercruysse L, Vanden Bossche R, Heyndrickx KS, Vanneste S, Goossens A, Gevaert K, Vandepoele K, Gonzalez N, Inzé D, De Jaeger G.

J Exp Bot. 2016 Oct;67(19):5825-5840. Epub 2016 Sep 22.

6.

Glutaredoxin GRXS17 Associates with the Cytosolic Iron-Sulfur Cluster Assembly Pathway.

Iñigo S, Durand AN, Ritter A, Le Gall S, Termathe M, Klassen R, Tohge T, De Coninck B, Van Leene J, De Clercq R, Cammue BP, Fernie AR, Gevaert K, De Jaeger G, Leidel SA, Schaffrath R, Van Lijsebettens M, Pauwels L, Goossens A.

Plant Physiol. 2016 Oct;172(2):858-873. Epub 2016 Aug 8.

7.

The Arabidopsis Iron-Sulfur Protein GRXS17 is a Target of the Ubiquitin E3 Ligases RGLG3 and RGLG4.

Nagels Durand A, Iñigo S, Ritter A, Iniesto E, De Clercq R, Staes A, Van Leene J, Rubio V, Gevaert K, De Jaeger G, Pauwels L, Goossens A.

Plant Cell Physiol. 2016 Sep;57(9):1801-13. doi: 10.1093/pcp/pcw122. Epub 2016 Aug 6.

PMID:
27497447
8.

Isolation of protein complexes from the model legume Medicago truncatula by tandem affinity purification in hairy root cultures.

Goossens J, De Geyter N, Walton A, Eeckhout D, Mertens J, Pollier J, Fiallos-Jurado J, De Keyser A, De Clercq R, Van Leene J, Gevaert K, De Jaeger G, Goormachtig S, Goossens A.

Plant J. 2016 Nov;88(3):476-489. doi: 10.1111/tpj.13258. Epub 2016 Sep 27.

9.

Transferring an optimized TAP-toolbox for the isolation of protein complexes to a portfolio of rice tissues.

Dedecker M, Van Leene J, De Winne N, Eeckhout D, Persiau G, Van De Slijke E, Cannoot B, Vercruysse L, Dumoulin L, Wojsznis N, Gevaert K, Vandenabeele S, De Jaeger G.

Plant Mol Biol. 2016 Jun;91(3):341-54. doi: 10.1007/s11103-016-0471-x. Epub 2016 Mar 22.

PMID:
27003905
10.

The RING E3 Ligase KEEP ON GOING Modulates JASMONATE ZIM-DOMAIN12 Stability.

Pauwels L, Ritter A, Goossens J, Durand AN, Liu H, Gu Y, Geerinck J, Boter M, Vanden Bossche R, De Clercq R, Van Leene J, Gevaert K, De Jaeger G, Solano R, Stone S, Innes RW, Callis J, Goossens A.

Plant Physiol. 2015 Oct;169(2):1405-17. doi: 10.1104/pp.15.00479. Epub 2015 Aug 28.

11.

A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis.

Gonzalez N, Pauwels L, Baekelandt A, De Milde L, Van Leene J, Besbrugge N, Heyndrickx KS, Cuéllar Pérez A, Durand AN, De Clercq R, Van De Slijke E, Vanden Bossche R, Eeckhout D, Gevaert K, Vandepoele K, De Jaeger G, Goossens A, Inzé D.

Plant Cell. 2015 Aug;27(8):2273-87. doi: 10.1105/tpc.15.00006. Epub 2015 Jul 31. Erratum in: Plant Cell. 2016 Mar;28(3):824.

12.

Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf.

Nelissen H, Eeckhout D, Demuynck K, Persiau G, Walton A, van Bel M, Vervoort M, Candaele J, De Block J, Aesaert S, Van Lijsebettens M, Goormachtig S, Vandepoele K, Van Leene J, Muszynski M, Gevaert K, Inzé D, De Jaeger G.

Plant Cell. 2015 Jun;27(6):1605-19. doi: 10.1105/tpc.15.00269. Epub 2015 Jun 2.

13.

Multiple mechanisms limit meiotic crossovers: TOP3α and two BLM homologs antagonize crossovers in parallel to FANCM.

Séguéla-Arnaud M, Crismani W, Larchevêque C, Mazel J, Froger N, Choinard S, Lemhemdi A, Macaisne N, Van Leene J, Gevaert K, De Jaeger G, Chelysheva L, Mercier R.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4713-8. doi: 10.1073/pnas.1423107112. Epub 2015 Mar 30.

14.

Unravelling plant molecular machineries through affinity purification coupled to mass spectrometry.

Dedecker M, Van Leene J, De Jaeger G.

Curr Opin Plant Biol. 2015 Apr;24:1-9. doi: 10.1016/j.pbi.2015.01.001. Epub 2015 Jan 17. Review.

PMID:
25603557
15.

An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes.

Van Leene J, Eeckhout D, Cannoot B, De Winne N, Persiau G, Van De Slijke E, Vercruysse L, Dedecker M, Verkest A, Vandepoele K, Martens L, Witters E, Gevaert K, De Jaeger G.

Nat Protoc. 2015 Jan;10(1):169-87. doi: 10.1038/nprot.2014.199. Epub 2014 Dec 18.

PMID:
25521792
16.

The Cyclin-Dependent Kinase Inhibitor KRP6 Induces Mitosis and Impairs Cytokinesis in Giant Cells Induced by Plant-Parasitic Nematodes in Arabidopsis.

Vieira P, De Clercq A, Stals H, Van Leene J, Van De Slijke E, Van Isterdael G, Eeckhout D, Persiau G, Van Damme D, Verkest A, Antonino de Souza JD, Júnior, Glab N, Abad P, Engler G, Inzé D, De Veylder L, De Jaeger G, Engler JD.

Plant Cell. 2014 Jun;26(6):2633-2647. Epub 2014 Jun 24.

17.

The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants.

Gadeyne A, Sánchez-Rodríguez C, Vanneste S, Di Rubbo S, Zauber H, Vanneste K, Van Leene J, De Winne N, Eeckhout D, Persiau G, Van De Slijke E, Cannoot B, Vercruysse L, Mayers JR, Adamowski M, Kania U, Ehrlich M, Schweighofer A, Ketelaar T, Maere S, Bednarek SY, Friml J, Gevaert K, Witters E, Russinova E, Persson S, De Jaeger G, Van Damme D.

Cell. 2014 Feb 13;156(4):691-704. doi: 10.1016/j.cell.2014.01.039.

18.

bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.

Fonseca S, Fernández-Calvo P, Fernández GM, Díez-Díaz M, Gimenez-Ibanez S, López-Vidriero I, Godoy M, Fernández-Barbero G, Van Leene J, De Jaeger G, Franco-Zorrilla JM, Solano R.

PLoS One. 2014 Jan 23;9(1):e86182. doi: 10.1371/journal.pone.0086182. eCollection 2014.

19.

A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification.

Verkest A, Abeel T, Heyndrickx KS, Van Leene J, Lanz C, Van De Slijke E, De Winne N, Eeckhout D, Persiau G, Van Breusegem F, Inzé D, Vandepoele K, De Jaeger G.

Plant Physiol. 2014 Mar;164(3):1122-33. doi: 10.1104/pp.113.229617. Epub 2014 Jan 22.

20.

ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.

Vercruyssen L, Verkest A, Gonzalez N, Heyndrickx KS, Eeckhout D, Han SK, Jégu T, Archacki R, Van Leene J, Andriankaja M, De Bodt S, Abeel T, Coppens F, Dhondt S, De Milde L, Vermeersch M, Maleux K, Gevaert K, Jerzmanowski A, Benhamed M, Wagner D, Vandepoele K, De Jaeger G, Inzé D.

Plant Cell. 2014 Jan;26(1):210-29. doi: 10.1105/tpc.113.115907. Epub 2014 Jan 17.

21.

ERF115 controls root quiescent center cell division and stem cell replenishment.

Heyman J, Cools T, Vandenbussche F, Heyndrickx KS, Van Leene J, Vercauteren I, Vanderauwera S, Vandepoele K, De Jaeger G, Van Der Straeten D, De Veylder L.

Science. 2013 Nov 15;342(6160):860-3. doi: 10.1126/science.1240667. Epub 2013 Oct 24.

22.

Retromer subunits VPS35A and VPS29 mediate prevacuolar compartment (PVC) function in Arabidopsis.

Nodzynski T, Feraru MI, Hirsch S, De Rycke R, Niculaes C, Boerjan W, Van Leene J, De Jaeger G, Vanneste S, Friml J.

Mol Plant. 2013 Nov;6(6):1849-62. doi: 10.1093/mp/sst044. Epub 2013 Jun 14.

23.

Plant protein interactomes.

Braun P, Aubourg S, Van Leene J, De Jaeger G, Lurin C.

Annu Rev Plant Biol. 2013;64:161-87. doi: 10.1146/annurev-arplant-050312-120140. Epub 2013 Jan 16. Review.

PMID:
23330791
24.

SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization.

Eloy NB, Gonzalez N, Van Leene J, Maleux K, Vanhaeren H, De Milde L, Dhondt S, Vercruysse L, Witters E, Mercier R, Cromer L, Beemster GT, Remaut H, Van Montagu MC, De Jaeger G, Ferreira PC, Inzé D.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13853-8. doi: 10.1073/pnas.1211418109. Epub 2012 Aug 6.

25.

Isolation of transcription factor complexes from Arabidopsis cell suspension cultures by tandem affinity purification.

Van Leene J, Eeckhout D, Persiau G, Van De Slijke E, Geerinck J, Van Isterdael G, Witters E, De Jaeger G.

Methods Mol Biol. 2011;754:195-218. doi: 10.1007/978-1-61779-154-3_11.

PMID:
21720954
26.

A kaleidoscopic view of the Arabidopsis core cell cycle interactome.

Van Leene J, Boruc J, De Jaeger G, Russinova E, De Veylder L.

Trends Plant Sci. 2011 Mar;16(3):141-50. doi: 10.1016/j.tplants.2010.12.004. Epub 2011 Jan 11. Review.

PMID:
21233003
27.

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana.

Van Leene J, Hollunder J, Eeckhout D, Persiau G, Van De Slijke E, Stals H, Van Isterdael G, Verkest A, Neirynck S, Buffel Y, De Bodt S, Maere S, Laukens K, Pharazyn A, Ferreira PC, Eloy N, Renne C, Meyer C, Faure JD, Steinbrenner J, Beynon J, Larkin JC, Van de Peer Y, Hilson P, Kuiper M, De Veylder L, Van Onckelen H, Inzé D, Witters E, De Jaeger G.

Mol Syst Biol. 2010 Aug 10;6:397. doi: 10.1038/msb.2010.53.

28.

CDKB1;1 forms a functional complex with CYCA2;3 to suppress endocycle onset.

Boudolf V, Lammens T, Boruc J, Van Leene J, Van Den Daele H, Maes S, Van Isterdael G, Russinova E, Kondorosi E, Witters E, De Jaeger G, Inzé D, De Veylder L.

Plant Physiol. 2009 Jul;150(3):1482-93. doi: 10.1104/pp.109.140269. Epub 2009 May 20.

29.

A bioanalytical method for the proteome wide display and analysis of protein complexes from whole plant cell lysates.

Remmerie N, Roef L, Van De Slijke E, Van Leene J, Persiau G, Eeckhout D, Stals H, Laukens K, Lemière F, Esmans E, Van Onckelen H, Inzé D, De Jaeger G, Witters E.

Proteomics. 2009 Feb;9(3):598-609. doi: 10.1002/pmic.200800100. Erratum in: Proteomics. 2009 Mar;9(5):1416.

PMID:
19132681
30.

Gene expression trends and protein features effectively complement each other in gene function prediction.

Wabnik K, Hvidsten TR, Kedzierska A, Van Leene J, De Jaeger G, Beemster GT, Komorowski J, Kuiper MT.

Bioinformatics. 2009 Feb 1;25(3):322-30. doi: 10.1093/bioinformatics/btn625. Epub 2008 Dec 2.

PMID:
19050035
31.

Boosting tandem affinity purification of plant protein complexes.

Van Leene J, Witters E, Inzé D, De Jaeger G.

Trends Plant Sci. 2008 Oct;13(10):517-20. doi: 10.1016/j.tplants.2008.08.002. Epub 2008 Sep 2.

PMID:
18771946
32.

A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana.

Van Leene J, Stals H, Eeckhout D, Persiau G, Van De Slijke E, Van Isterdael G, De Clercq A, Bonnet E, Laukens K, Remmerie N, Henderickx K, De Vijlder T, Abdelkrim A, Pharazyn A, Van Onckelen H, Inzé D, Witters E, De Jaeger G.

Mol Cell Proteomics. 2007 Jul;6(7):1226-38. Epub 2007 Apr 9.

33.

A technology platform for the fast production of monoclonal recombinant antibodies against plant proteins and peptides.

Eeckhout D, De Clercq A, Van De Slijke E, Van Leene J, Stals H, Casteels P, Persiau G, Vercammen D, Van Breusegem F, Zabeau M, Inzé D, Jespers L, Depicker A, De Jaeger G.

J Immunol Methods. 2004 Nov;294(1-2):181-7.

PMID:
15604026

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