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Items: 1 to 50 of 242

1.

The N-glycan structures of the antigenic variants of chlorovirus PBCV-1 major capsid protein help to identify the virus-encoded glycosyltransferases.

Speciale I, Duncan GA, Unione L, Agarkova IV, Garozzo D, Jiménez-Barbero J, Lin S, Lowary TL, Molinaro A, Noel E, Laugieri ME, Tonetti MG, Van Etten JL, De Castro C.

J Biol Chem. 2019 Feb 8. pii: jbc.RA118.007182. doi: 10.1074/jbc.RA118.007182. [Epub ahead of print]

2.

Near-atomic structure of a giant virus.

Fang Q, Zhu D, Agarkova I, Adhikari J, Klose T, Liu Y, Chen Z, Sun Y, Gross ML, Van Etten JL, Zhang X, Rossmann MG.

Nat Commun. 2019 Jan 23;10(1):388. doi: 10.1038/s41467-019-08319-6.

3.

Chloroviruses lure hosts through long-distance chemical signaling.

Dunigan DD, Al-Sammak M, Al-Ameeli Z, Agarkova IV, DeLong JP, Van Etten JL.

J Virol. 2019 Jan 9. pii: JVI.01688-18. doi: 10.1128/JVI.01688-18. [Epub ahead of print]

PMID:
30626679
4.

Biophysical Approaches to Solve the Structures of the Complex Glycan Shield of Chloroviruses.

De Castro C, Duncan GA, Garozzo D, Molinaro A, Sturiale L, Tonetti M, Van Etten JL.

Adv Exp Med Biol. 2018;1104:237-257. doi: 10.1007/978-981-13-2158-0_12.

PMID:
30484252
5.

Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes.

Seitzer P, Jeanniard A, Ma F, Van Etten JL, Facciotti MT, Dunigan DD.

Viruses. 2018 Oct 20;10(10). pii: E576. doi: 10.3390/v10100576.

6.

Genes for Membrane Transport Proteins: Not So Rare in Viruses.

Greiner T, Moroni A, Van Etten JL, Thiel G.

Viruses. 2018 Aug 26;10(9). pii: E456. doi: 10.3390/v10090456.

7.

Clean Low-Biomass Procedures and Their Application to Ancient Ice Core Microorganisms.

Zhong ZP, Solonenko NE, Gazitúa MC, Kenny DV, Mosley-Thompson E, Rich VI, Van Etten JL, Thompson LG, Sullivan MB.

Front Microbiol. 2018 May 25;9:1094. doi: 10.3389/fmicb.2018.01094. eCollection 2018.

8.

Pushing the resolution limit by correcting the Ewald sphere effect in single-particle Cryo-EM reconstructions.

Zhu D, Wang X, Fang Q, Van Etten JL, Rossmann MG, Rao Z, Zhang X.

Nat Commun. 2018 Apr 19;9(1):1552. doi: 10.1038/s41467-018-04051-9.

9.

Indel detection from DNA and RNA sequencing data with transIndel.

Yang R, Van Etten JL, Dehm SM.

BMC Genomics. 2018 Apr 19;19(1):270. doi: 10.1186/s12864-018-4671-4.

10.

Structure of the chlorovirus PBCV-1 major capsid glycoprotein determined by combining crystallographic and carbohydrate molecular modeling approaches.

De Castro C, Klose T, Speciale I, Lanzetta R, Molinaro A, Van Etten JL, Rossmann MG.

Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):E44-E52. doi: 10.1073/pnas.1613432115. Epub 2017 Dec 18.

11.

Identification of diverse target RNAs that are functionally regulated by human Pumilio proteins.

Bohn JA, Van Etten JL, Schagat TL, Bowman BM, McEachin RC, Freddolino PL, Goldstrohm AC.

Nucleic Acids Res. 2018 Jan 9;46(1):362-386. doi: 10.1093/nar/gkx1120.

12.

Size-dependent Catalysis of Chlorovirus Population Growth by A Messy Feeding Predator.

DeLong JP, Al-Ameeli Z, Lyon S, Van Etten JL, Dunigan DD.

Microb Ecol. 2018 May;75(4):847-853. doi: 10.1007/s00248-017-1106-8. Epub 2017 Nov 8.

PMID:
29119315
13.

Targeting a Single Alternative Polyadenylation Site Coordinately Blocks Expression of Androgen Receptor mRNA Splice Variants in Prostate Cancer.

Van Etten JL, Nyquist M, Li Y, Yang R, Ho Y, Johnson R, Ondigi O, Voytas DF, Henzler C, Dehm SM.

Cancer Res. 2017 Oct 1;77(19):5228-5235. doi: 10.1158/0008-5472.CAN-17-0320. Epub 2017 Aug 15.

14.

Multiple origins of endosymbionts in Chlorellaceae with no reductive effects on the plastid or mitochondrial genomes.

Fan W, Guo W, Van Etten JL, Mower JP.

Sci Rep. 2017 Aug 30;7(1):10101. doi: 10.1038/s41598-017-10388-w.

15.

Structural studies demonstrating a bacteriophage-like replication cycle of the eukaryote-infecting Paramecium bursaria chlorella virus-1.

Milrot E, Shimoni E, Dadosh T, Rechav K, Unger T, Van Etten JL, Minsky A.

PLoS Pathog. 2017 Aug 29;13(8):e1006562. doi: 10.1371/journal.ppat.1006562. eCollection 2017 Aug.

16.

Identification of Intrahelical Bifurcated H-Bonds as a New Type of Gate in K+ Channels.

Rauh O, Urban M, Henkes LM, Winterstein T, Greiner T, Van Etten JL, Moroni A, Kast SM, Thiel G, Schroeder I.

J Am Chem Soc. 2017 Jun 7;139(22):7494-7503. doi: 10.1021/jacs.7b01158. Epub 2017 May 23.

PMID:
28499087
17.

Androgen Receptor Variant AR-V9 Is Coexpressed with AR-V7 in Prostate Cancer Metastases and Predicts Abiraterone Resistance.

Kohli M, Ho Y, Hillman DW, Van Etten JL, Henzler C, Yang R, Sperger JM, Li Y, Tseng E, Hon T, Clark T, Tan W, Carlson RE, Wang L, Sicotte H, Thai H, Jimenez R, Huang H, Vedell PT, Eckloff BW, Quevedo JF, Pitot HC, Costello BA, Jen J, Wieben ED, Silverstein KAT, Lang JM, Wang L, Dehm SM.

Clin Cancer Res. 2017 Aug 15;23(16):4704-4715. doi: 10.1158/1078-0432.CCR-17-0017. Epub 2017 May 4.

18.

Chloroviruses Have a Sweet Tooth.

Van Etten JL, Agarkova I, Dunigan DD, Tonetti M, De Castro C, Duncan GA.

Viruses. 2017 Apr 22;9(4). pii: E88. doi: 10.3390/v9040088. Review.

19.

Structure of the N-glycans from the chlorovirus NE-JV-1.

Speciale I, Agarkova I, Duncan GA, Van Etten JL, De Castro C.

Antonie Van Leeuwenhoek. 2017 Nov;110(11):1391-1399. doi: 10.1007/s10482-017-0861-3. Epub 2017 Mar 22.

PMID:
28331984
20.

Conversion of an instantaneous activating K+ channel into a slow activating inward rectifier.

Baumeister D, Hertel B, Schroeder I, Gazzarrini S, Kast SM, Van Etten JL, Moroni A, Thiel G.

FEBS Lett. 2017 Jan;591(2):295-303. doi: 10.1002/1873-3468.12536. Epub 2017 Jan 2.

21.

Predators catalyze an increase in chloroviruses by foraging on the symbiotic hosts of zoochlorellae.

DeLong JP, Al-Ameeli Z, Duncan G, Van Etten JL, Dunigan DD.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13780-13784. Epub 2016 Nov 7.

22.

Characterization of a new chlorovirus type with permissive and non-permissive features on phylogenetically related algal strains.

Quispe CF, Esmael A, Sonderman O, McQuinn M, Agarkova I, Battah M, Duncan GA, Dunigan DD, Smith TPL, De Castro C, Speciale I, Ma F, Van Etten JL.

Virology. 2017 Jan;500:103-113. doi: 10.1016/j.virol.2016.10.013. Epub 2016 Oct 27.

23.

Giant Chloroviruses: Five Easy Questions.

Van Etten JL, Dunigan DD.

PLoS Pathog. 2016 Aug 18;12(8):e1005751. doi: 10.1371/journal.ppat.1005751. eCollection 2016 Aug. Review. No abstract available.

24.

Noninvasive Measurement of Electrical Events Associated with a Single Chlorovirus Infection of a Microalgal Cell.

Lee SW, Lee EH, Thiel G, Van Etten JL, Saraf RF.

ACS Nano. 2016 May 24;10(5):5123-30. doi: 10.1021/acsnano.6b00299. Epub 2016 May 9.

PMID:
27139597
25.

Three-year survey of abundance, prevalence and genetic diversity of chlorovirus populations in a small urban lake.

Quispe CF, Sonderman O, Seng A, Rasmussen B, Weber G, Mueller C, Dunigan DD, Van Etten JL.

Arch Virol. 2016 Jul;161(7):1839-47. doi: 10.1007/s00705-016-2853-4. Epub 2016 Apr 11.

26.

Clonal origin and spread of metastatic prostate cancer.

Van Etten JL, Dehm SM.

Endocr Relat Cancer. 2016 Apr;23(4):R207-17. doi: 10.1530/ERC-16-0049. Epub 2016 Mar 21. Review.

27.

N-Linked Glycans of Chloroviruses Sharing a Core Architecture without Precedent.

De Castro C, Speciale I, Duncan G, Dunigan DD, Agarkova I, Lanzetta R, Sturiale L, Palmigiano A, Garozzo D, Molinaro A, Tonetti M, Van Etten JL.

Angew Chem Int Ed Engl. 2016 Jan 11;55(2):654-8. doi: 10.1002/anie.201509150. Epub 2015 Nov 19.

28.

Response of Mammalian Macrophages to Challenge with the Chlorovirus Acanthocystis turfacea Chlorella Virus 1.

Petro TM, Agarkova IV, Zhou Y, Yolken RH, Van Etten JL, Dunigan DD.

J Virol. 2015 Dec;89(23):12096-107. doi: 10.1128/JVI.01254-15. Epub 2015 Sep 23.

29.

Virus-host interactions: insights from the replication cycle of the large Paramecium bursaria chlorella virus.

Milrot E, Mutsafi Y, Fridmann-Sirkis Y, Shimoni E, Rechav K, Gurnon JR, Van Etten JL, Minsky A.

Cell Microbiol. 2016 Jan;18(1):3-16. doi: 10.1111/cmi.12486. Epub 2015 Aug 27.

PMID:
26248343
30.

Optogenetics. Engineering of a light-gated potassium channel.

Cosentino C, Alberio L, Gazzarrini S, Aquila M, Romano E, Cermenati S, Zuccolini P, Petersen J, Beltrame M, Van Etten JL, Christie JM, Thiel G, Moroni A.

Science. 2015 May 8;348(6235):707-10. doi: 10.1126/science.aaa2787. Epub 2015 May 7.

31.

Large dsDNA chloroviruses encode diverse membrane transport proteins.

Thiel G, Greiner T, Dunigan DD, Moroni A, Van Etten JL.

Virology. 2015 May;479-480:38-45. doi: 10.1016/j.virol.2015.02.025. Epub 2015 Mar 9. Review.

32.

Reply to Kjartansdóttir et al.: Chlorovirus ATCV-1 findings not explained by contamination.

Yolken RH, Jones-Brando L, Dunigan DD, Kannan G, Dickerson F, Severance E, Sabunciyan S, Talbot CC Jr, Prandovszky E, Gurnon JR, Agarkova IV, Leister F, Gressitt KL, Chen O, Deuber B, Ma F, Pletnikov MV, Van Etten JL.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):E927. doi: 10.1073/pnas.1424665112. Epub 2015 Feb 5. No abstract available.

33.

Viruses infecting marine picoplancton encode functional potassium ion channels.

Siotto F, Martin C, Rauh O, Van Etten JL, Schroeder I, Moroni A, Thiel G.

Virology. 2014 Oct;466-467:103-11. doi: 10.1016/j.virol.2014.05.002. Epub 2014 Oct 22.

34.

Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice.

Yolken RH, Jones-Brando L, Dunigan DD, Kannan G, Dickerson F, Severance E, Sabunciyan S, Talbot CC Jr, Prandovszky E, Gurnon JR, Agarkova IV, Leister F, Gressitt KL, Chen O, Deuber B, Ma F, Pletnikov MV, Van Etten JL.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):16106-11. doi: 10.1073/pnas.1418895111. Epub 2014 Oct 27.

35.

Chlorovirus Skp1-binding ankyrin repeat protein interplay and mimicry of cellular ubiquitin ligase machinery.

Noel EA, Kang M, Adamec J, Van Etten JL, Oyler GA.

J Virol. 2014 Dec;88(23):13798-810. doi: 10.1128/JVI.02109-14. Epub 2014 Sep 24.

36.

Dynamic attachment of Chlorovirus PBCV-1 to Chlorella variabilis.

Agarkova I, Hertel B, Zhang X, Lane L, Tchourbanov A, Dunigan DD, Thiel G, Rossmann MG, Van Etten JL.

Virology. 2014 Oct;466-467:95-102. doi: 10.1016/j.virol.2014.07.002. Epub 2014 Sep 18.

37.

Viruses as nanoparticles: structure versus collective dynamics.

Sirotkin S, Mermet A, Bergoin M, Ward V, Van Etten JL.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Aug;90(2):022718. Epub 2014 Aug 27.

38.

Chlorovirus PBCV-1 encodes an active copper-zinc superoxide dismutase.

Kang M, Duncan GA, Kuszynski C, Oyler G, Zheng J, Becker DF, Van Etten JL.

J Virol. 2014 Nov;88(21):12541-50. doi: 10.1128/JVI.02031-14. Epub 2014 Aug 20.

39.

Expression of Chlorovirus MT325 aquaglyceroporin (aqpv1) in tobacco and its role in mitigating drought stress.

Bihmidine S, Cao M, Kang M, Awada T, Van Etten JL, Dunigan DD, Clemente TE.

Planta. 2014 Jul;240(1):209-21. doi: 10.1007/s00425-014-2075-5. Epub 2014 May 6.

40.

Deep RNA sequencing reveals hidden features and dynamics of early gene transcription in Paramecium bursaria chlorella virus 1.

Blanc G, Mozar M, Agarkova IV, Gurnon JR, Yanai-Balser G, Rowe JM, Xia Y, Riethoven JJ, Dunigan DD, Van Etten JL.

PLoS One. 2014 Mar 7;9(3):e90989. doi: 10.1371/journal.pone.0090989. eCollection 2014.

41.

Global analysis of Chlorella variabilis NC64A mRNA profiles during the early phase of Paramecium bursaria chlorella virus-1 infection.

Rowe JM, Jeanniard A, Gurnon JR, Xia Y, Dunigan DD, Van Etten JL, Blanc G.

PLoS One. 2014 Mar 7;9(3):e90988. doi: 10.1371/journal.pone.0090988. eCollection 2014.

42.

A virus-encoded potassium ion channel is a structural protein in the chlorovirus Paramecium bursaria chlorella virus 1 virion.

Romani G, Piotrowski A, Hillmer S, Gurnon J, Van Etten JL, Moroni A, Thiel G, Hertel B.

J Gen Virol. 2013 Nov;94(Pt 11):2549-56. doi: 10.1099/vir.0.055251-0. Epub 2013 Aug 5.

43.

Structure of N-linked oligosaccharides attached to chlorovirus PBCV-1 major capsid protein reveals unusual class of complex N-glycans.

De Castro C, Molinaro A, Piacente F, Gurnon JR, Sturiale L, Palmigiano A, Lanzetta R, Parrilli M, Garozzo D, Tonetti MG, Van Etten JL.

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):13956-60. doi: 10.1073/pnas.1313005110. Epub 2013 Aug 5.

44.

"Megavirales", a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses.

Colson P, De Lamballerie X, Yutin N, Asgari S, Bigot Y, Bideshi DK, Cheng XW, Federici BA, Van Etten JL, Koonin EV, La Scola B, Raoult D.

Arch Virol. 2013 Dec;158(12):2517-21. doi: 10.1007/s00705-013-1768-6. Epub 2013 Jun 29.

45.

Potassium ion channels: could they have evolved from viruses?

Thiel G, Moroni A, Blanc G, Van Etten JL.

Plant Physiol. 2013 Jul;162(3):1215-24. doi: 10.1104/pp.113.219360. Epub 2013 May 29. Review. No abstract available.

46.

Evaluation of higher plant virus resistance genes in the green alga, Chlorella variabilis NC64A, during the early phase of infection with Paramecium bursaria chlorella virus-1.

Rowe JM, Dunigan DD, Blanc G, Gurnon JR, Xia Y, Van Etten JL.

Virology. 2013 Aug 1;442(2):101-13. doi: 10.1016/j.virol.2013.04.018. Epub 2013 May 21.

47.

Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses.

Jeanniard A, Dunigan DD, Gurnon JR, Agarkova IV, Kang M, Vitek J, Duncan G, McClung OW, Larsen M, Claverie JM, Van Etten JL, Blanc G.

BMC Genomics. 2013 Mar 8;14:158. doi: 10.1186/1471-2164-14-158.

48.

The voltage-sensing domain of a phosphatase gates the pore of a potassium channel.

Arrigoni C, Schroeder I, Romani G, Van Etten JL, Thiel G, Moroni A.

J Gen Physiol. 2013 Mar;141(3):389-95. doi: 10.1085/jgp.201210940.

49.

Relevance of lysine snorkeling in the outer transmembrane domain of small viral potassium ion channels.

Gebhardt M, Henkes LM, Tayefeh S, Hertel B, Greiner T, Van Etten JL, Baumeister D, Cosentino C, Moroni A, Kast SM, Thiel G.

Biochemistry. 2012 Jul 17;51(28):5571-9. Epub 2012 Jul 6.

PMID:
22734656
50.

Paramecium bursaria chlorella virus 1 proteome reveals novel architectural and regulatory features of a giant virus.

Dunigan DD, Cerny RL, Bauman AT, Roach JC, Lane LC, Agarkova IV, Wulser K, Yanai-Balser GM, Gurnon JR, Vitek JC, Kronschnabel BJ, Jeanniard A, Blanc G, Upton C, Duncan GA, McClung OW, Ma F, Van Etten JL.

J Virol. 2012 Aug;86(16):8821-34. doi: 10.1128/JVI.00907-12. Epub 2012 Jun 13.

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