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Items: 1 to 50 of 229

1.

Ciftify: A framework for surface-based analysis of legacy MR acquisitions.

Dickie EW, Anticevic A, Smith DE, Coalson TS, Manogaran M, Calarco N, Viviano JD, Glasser MF, Van Essen DC, Voineskos AN.

Neuroimage. 2019 Aug 15;197:818-826. doi: 10.1016/j.neuroimage.2019.04.078. Epub 2019 May 12.

PMID:
31091476
2.

Classification of temporal ICA components for separating global noise from fMRI data: Reply to Power.

Glasser MF, Coalson TS, Bijsterbosch JD, Harrison SJ, Harms MP, Anticevic A, Van Essen DC, Smith SM.

Neuroimage. 2019 Aug 15;197:435-438. doi: 10.1016/j.neuroimage.2019.04.046. Epub 2019 Apr 24.

PMID:
31026516
3.

The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion Selection.

Sultana T, van Essen D, Siol O, Bailly-Bechet M, Philippe C, Zine El Aabidine A, Pioger L, Nigumann P, Saccani S, Andrau JC, Gilbert N, Cristofari G.

Mol Cell. 2019 May 2;74(3):555-570.e7. doi: 10.1016/j.molcel.2019.02.036. Epub 2019 Apr 4.

PMID:
30956044
4.

Hierarchical Heterogeneity across Human Cortex Shapes Large-Scale Neural Dynamics.

Demirtaş M, Burt JB, Helmer M, Ji JL, Adkinson BD, Glasser MF, Van Essen DC, Sotiropoulos SN, Anticevic A, Murray JD.

Neuron. 2019 Mar 20;101(6):1181-1194.e13. doi: 10.1016/j.neuron.2019.01.017. Epub 2019 Feb 7.

PMID:
30744986
5.

The Human Connectome Project 7 Tesla retinotopy dataset: Description and population receptive field analysis.

Benson NC, Jamison KW, Arcaro MJ, Vu AT, Glasser MF, Coalson TS, Van Essen DC, Yacoub E, Ugurbil K, Winawer J, Kay K.

J Vis. 2018 Dec 3;18(13):23. doi: 10.1167/18.13.23.

6.

Reply to Barton and Montgomery: A case for preferential prefrontal cortical expansion.

Donahue CJ, Glasser MF, Preuss TM, Rilling JK, Van Essen DC.

Proc Natl Acad Sci U S A. 2019 Jan 2;116(1):5-6. doi: 10.1073/pnas.1819241116. Epub 2018 Dec 17. No abstract available.

7.

Genomic kinship construction to enhance genetic analyses in the human connectome project data.

Kochunov P, Donohue B, Mitchell BD, Ganjgahi H, Adhikari B, Ryan M, Medland SE, Jahanshad N, Thompson PM, Blangero J, Fieremans E, Novikov DS, Marcus D, Van Essen DC, Glahn DC, Elliot Hong L, Nichols TE.

Hum Brain Mapp. 2019 Apr 1;40(5):1677-1688. doi: 10.1002/hbm.24479. Epub 2018 Nov 29.

PMID:
30496643
8.

The Lifespan Human Connectome Project in Aging: An overview.

Bookheimer SY, Salat DH, Terpstra M, Ances BM, Barch DM, Buckner RL, Burgess GC, Curtiss SW, Diaz-Santos M, Elam JS, Fischl B, Greve DN, Hagy HA, Harms MP, Hatch OM, Hedden T, Hodge C, Japardi KC, Kuhn TP, Ly TK, Smith SM, Somerville LH, Uğurbil K, van der Kouwe A, Van Essen D, Woods RP, Yacoub E.

Neuroimage. 2019 Jan 15;185:335-348. doi: 10.1016/j.neuroimage.2018.10.009. Epub 2018 Oct 15.

9.

Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects.

Harms MP, Somerville LH, Ances BM, Andersson J, Barch DM, Bastiani M, Bookheimer SY, Brown TB, Buckner RL, Burgess GC, Coalson TS, Chappell MA, Dapretto M, Douaud G, Fischl B, Glasser MF, Greve DN, Hodge C, Jamison KW, Jbabdi S, Kandala S, Li X, Mair RW, Mangia S, Marcus D, Mascali D, Moeller S, Nichols TE, Robinson EC, Salat DH, Smith SM, Sotiropoulos SN, Terpstra M, Thomas KM, Tisdall MD, Ugurbil K, van der Kouwe A, Woods RP, Zöllei L, Van Essen DC, Yacoub E.

Neuroimage. 2018 Dec;183:972-984. doi: 10.1016/j.neuroimage.2018.09.060. Epub 2018 Sep 24.

PMID:
30261308
10.

The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds.

Somerville LH, Bookheimer SY, Buckner RL, Burgess GC, Curtiss SW, Dapretto M, Elam JS, Gaffrey MS, Harms MP, Hodge C, Kandala S, Kastman EK, Nichols TE, Schlaggar BL, Smith SM, Thomas KM, Yacoub E, Van Essen DC, Barch DM.

Neuroimage. 2018 Dec;183:456-468. doi: 10.1016/j.neuroimage.2018.08.050. Epub 2018 Aug 22.

11.

Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans.

Van Essen DC, Glasser MF.

Neuron. 2018 Aug 22;99(4):640-663. doi: 10.1016/j.neuron.2018.07.002. Review.

12.

Development and Evolution of Cerebral and Cerebellar Cortex.

Van Essen DC, Donahue CJ, Glasser MF.

Brain Behav Evol. 2018;91(3):158-169. doi: 10.1159/000489943. Epub 2018 Aug 10. Review.

13.

A metabolic interplay coordinated by HLX regulates myeloid differentiation and AML through partly overlapping pathways.

Piragyte I, Clapes T, Polyzou A, Klein Geltink RI, Lefkopoulos S, Yin N, Cauchy P, Curtis JD, Klaeylé L, Langa X, Beckmann CCA, Wlodarski MW, Müller P, Van Essen D, Rambold A, Kapp FG, Mione M, Buescher JM, Pearce EL, Polyzos A, Trompouki E.

Nat Commun. 2018 Aug 6;9(1):3090. doi: 10.1038/s41467-018-05311-4.

14.

The impact of traditional neuroimaging methods on the spatial localization of cortical areas.

Coalson TS, Van Essen DC, Glasser MF.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):E6356-E6365. doi: 10.1073/pnas.1801582115. Epub 2018 Jun 20.

15.

Scaling of human brain size.

Van Essen DC.

Science. 2018 Jun 15;360(6394):1184-1185. doi: 10.1126/science.aat8948. No abstract available.

PMID:
29903961
16.

Zbtb7a is a transducer for the control of promoter accessibility by NF-kappa B and multiple other transcription factors.

Ramos Pittol JM, Oruba A, Mittler G, Saccani S, van Essen D.

PLoS Biol. 2018 May 29;16(5):e2004526. doi: 10.1371/journal.pbio.2004526. eCollection 2018 May.

17.

Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data.

Glasser MF, Coalson TS, Bijsterbosch JD, Harrison SJ, Harms MP, Anticevic A, Van Essen DC, Smith SM.

Neuroimage. 2018 Nov 1;181:692-717. doi: 10.1016/j.neuroimage.2018.04.076. Epub 2018 Aug 2.

PMID:
29753843
18.

Quantitative assessment of prefrontal cortex in humans relative to nonhuman primates.

Donahue CJ, Glasser MF, Preuss TM, Rilling JK, Van Essen DC.

Proc Natl Acad Sci U S A. 2018 May 29;115(22):E5183-E5192. doi: 10.1073/pnas.1721653115. Epub 2018 May 8.

19.

A gyral coordinate system predictive of fibre orientations.

Cottaar M, Bastiani M, Chen C, Dikranian K, Van Essen D, Behrens TE, Sotiropoulos SN, Jbabdi S.

Neuroimage. 2018 Aug 1;176:417-430. doi: 10.1016/j.neuroimage.2018.04.040. Epub 2018 Apr 21.

20.

Dynamic patterns of cortical expansion during folding of the preterm human brain.

Garcia KE, Robinson EC, Alexopoulos D, Dierker DL, Glasser MF, Coalson TS, Ortinau CM, Rueckert D, Taber LA, Van Essen DC, Rogers CE, Smyser CD, Bayly PV.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3156-3161. doi: 10.1073/pnas.1715451115. Epub 2018 Mar 5.

21.

The relationship between spatial configuration and functional connectivity of brain regions.

Bijsterbosch JD, Woolrich MW, Glasser MF, Robinson EC, Beckmann CF, Van Essen DC, Harrison SJ, Smith SM.

Elife. 2018 Feb 16;7. pii: e32992. doi: 10.7554/eLife.32992.

22.

Neurite imaging reveals microstructural variations in human cerebral cortical gray matter.

Fukutomi H, Glasser MF, Zhang H, Autio JA, Coalson TS, Okada T, Togashi K, Van Essen DC, Hayashi T.

Neuroimage. 2018 Nov 15;182:488-499. doi: 10.1016/j.neuroimage.2018.02.017. Epub 2018 Feb 12.

23.

The Mouse Cortical Connectome, Characterized by an Ultra-Dense Cortical Graph, Maintains Specificity by Distinct Connectivity Profiles.

Gămănuţ R, Kennedy H, Toroczkai Z, Ercsey-Ravasz M, Van Essen DC, Knoblauch K, Burkhalter A.

Neuron. 2018 Feb 7;97(3):698-715.e10. doi: 10.1016/j.neuron.2017.12.037.

24.

Multimodal surface matching with higher-order smoothness constraints.

Robinson EC, Garcia K, Glasser MF, Chen Z, Coalson TS, Makropoulos A, Bozek J, Wright R, Schuh A, Webster M, Hutter J, Price A, Cordero Grande L, Hughes E, Tusor N, Bayly PV, Van Essen DC, Smith SM, Edwards AD, Hajnal J, Jenkinson M, Glocker B, Rueckert D.

Neuroimage. 2018 Feb 15;167:453-465. doi: 10.1016/j.neuroimage.2017.10.037. Epub 2017 Oct 31.

25.

The heritability of multi-modal connectivity in human brain activity.

Colclough GL, Smith SM, Nichols TE, Winkler AM, Sotiropoulos SN, Glasser MF, Van Essen DC, Woolrich MW.

Elife. 2017 Jul 26;6. pii: e20178. doi: 10.7554/eLife.20178.

26.

Parcellations and Connectivity Patterns in Human and Macaque Cerebral Cortex.

Van Essen DC, Donahue C, Dierker DL, Glasser MF.

In: Kennedy H, Van Essen DC, Christen Y, editors. Micro-, Meso- and Macro-Connectomics of the Brain [Internet]. Cham (CH): Springer; 2016.
2016 Mar 11.

27.

Best practices in data analysis and sharing in neuroimaging using MRI.

Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BT.

Nat Neurosci. 2017 Feb 23;20(3):299-303. doi: 10.1038/nn.4500. Review.

28.

The relationship of cortical folding and brain arteriovenous malformations.

Shah MN, Smith SE, Dierker DL, Herbert JP, Coalson TS, Bruck BS, Zipfel GJ, Van Essen DC, Dacey RG Jr.

Neurovasc Imaging. 2016;2. pii: 13. doi: 10.1186/s40809-016-0024-3. Epub 2016 Nov 22.

29.

The Human Connectome Project's neuroimaging approach.

Glasser MF, Smith SM, Marcus DS, Andersson JL, Auerbach EJ, Behrens TE, Coalson TS, Harms MP, Jenkinson M, Moeller S, Robinson EC, Sotiropoulos SN, Xu J, Yacoub E, Ugurbil K, Van Essen DC.

Nat Neurosci. 2016 Aug 26;19(9):1175-87. doi: 10.1038/nn.4361. Review.

30.

Spatial Embedding and Wiring Cost Constrain the Functional Layout of the Cortical Network of Rodents and Primates.

Horvát S, Gămănuț R, Ercsey-Ravasz M, Magrou L, Gămănuț B, Van Essen DC, Burkhalter A, Knoblauch K, Toroczkai Z, Kennedy H.

PLoS Biol. 2016 Jul 21;14(7):e1002512. doi: 10.1371/journal.pbio.1002512. eCollection 2016 Jul.

31.

A multi-modal parcellation of human cerebral cortex.

Glasser MF, Coalson TS, Robinson EC, Hacker CD, Harwell J, Yacoub E, Ugurbil K, Andersson J, Beckmann CF, Jenkinson M, Smith SM, Van Essen DC.

Nature. 2016 Aug 11;536(7615):171-178. doi: 10.1038/nature18933. Epub 2016 Jul 20.

32.

Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey.

Donahue CJ, Sotiropoulos SN, Jbabdi S, Hernandez-Fernandez M, Behrens TE, Dyrby TB, Coalson T, Kennedy H, Knoblauch K, Van Essen DC, Glasser MF.

J Neurosci. 2016 Jun 22;36(25):6758-70. doi: 10.1523/JNEUROSCI.0493-16.2016.

33.

The Brain Analysis Library of Spatial maps and Atlases (BALSA) database.

Van Essen DC, Smith J, Glasser MF, Elam J, Donahue CJ, Dierker DL, Reid EK, Coalson T, Harwell J.

Neuroimage. 2017 Jan;144(Pt B):270-274. doi: 10.1016/j.neuroimage.2016.04.002. Epub 2016 Apr 10.

34.

Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci.

Philippe C, Vargas-Landin DB, Doucet AJ, van Essen D, Vera-Otarola J, Kuciak M, Corbin A, Nigumann P, Cristofari G.

Elife. 2016 Mar 26;5. pii: e13926. doi: 10.7554/eLife.13926.

35.

Early Postnatal Myelin Content Estimate of White Matter via T1w/T2w Ratio.

Lee K, Cherel M, Budin F, Gilmore J, Consing KZ, Rasmussen J, Wadhwa PD, Entringer S, Glasser MF, Van Essen DC, Buss C, Styner M.

Proc SPIE Int Soc Opt Eng. 2015;9417. pii: 94171R. Epub 2015 Mar 17.

36.

Canonical genetic signatures of the adult human brain.

Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee CK, Bernard A, Glasser MF, Dierker DL, Menche J, Szafer A, Collman F, Grange P, Berman KA, Mihalas S, Yao Z, Stewart L, Barabási AL, Schulkin J, Phillips J, Ng L, Dang C, Haynor DR, Jones A, Van Essen DC, Koch C, Lein E.

Nat Neurosci. 2015 Dec;18(12):1832-44. doi: 10.1038/nn.4171. Epub 2015 Nov 16.

37.

Comparison of cortical folding measures for evaluation of developing human brain.

Shimony JS, Smyser CD, Wideman G, Alexopoulos D, Hill J, Harwell J, Dierker D, Van Essen DC, Inder TE, Neil JJ.

Neuroimage. 2016 Jan 15;125:780-790. doi: 10.1016/j.neuroimage.2015.11.001. Epub 2015 Nov 6.

38.

Measuring macroscopic brain connections in vivo.

Jbabdi S, Sotiropoulos SN, Haber SN, Van Essen DC, Behrens TE.

Nat Neurosci. 2015 Nov;18(11):1546-55. doi: 10.1038/nn.4134. Epub 2015 Oct 27. Review.

PMID:
26505566
39.

A positive-negative mode of population covariation links brain connectivity, demographics and behavior.

Smith SM, Nichols TE, Vidaurre D, Winkler AM, Behrens TE, Glasser MF, Ugurbil K, Barch DM, Van Essen DC, Miller KL.

Nat Neurosci. 2015 Nov;18(11):1565-7. doi: 10.1038/nn.4125. Epub 2015 Sep 28.

40.

The human connectome in health and psychopathology.

Van Essen DC, Barch DM.

World Psychiatry. 2015 Jun;14(2):154-7. doi: 10.1002/wps.20228. No abstract available.

41.

ConnectomeDB--Sharing human brain connectivity data.

Hodge MR, Horton W, Brown T, Herrick R, Olsen T, Hileman ME, McKay M, Archie KA, Cler E, Harms MP, Burgess GC, Glasser MF, Elam JS, Curtiss SW, Barch DM, Oostenveld R, Larson-Prior LJ, Ugurbil K, Van Essen DC, Marcus DS.

Neuroimage. 2016 Jan 1;124(Pt B):1102-1107. doi: 10.1016/j.neuroimage.2015.04.046. Epub 2015 Apr 29.

42.

Heritability of fractional anisotropy in human white matter: a comparison of Human Connectome Project and ENIGMA-DTI data.

Kochunov P, Jahanshad N, Marcus D, Winkler A, Sprooten E, Nichols TE, Wright SN, Hong LE, Patel B, Behrens T, Jbabdi S, Andersson J, Lenglet C, Yacoub E, Moeller S, Auerbach E, Ugurbil K, Sotiropoulos SN, Brouwer RM, Landman B, Lemaitre H, den Braber A, Zwiers MP, Ritchie S, van Hulzen K, Almasy L, Curran J, deZubicaray GI, Duggirala R, Fox P, Martin NG, McMahon KL, Mitchell B, Olvera RL, Peterson C, Starr J, Sussmann J, Wardlaw J, Wright M, Boomsma DI, Kahn R, de Geus EJ, Williamson DE, Hariri A, van 't Ent D, Bastin ME, McIntosh A, Deary IJ, Hulshoff Pol HE, Blangero J, Thompson PM, Glahn DC, Van Essen DC.

Neuroimage. 2015 May 1;111:300-11. doi: 10.1016/j.neuroimage.2015.02.050. Epub 2015 Mar 4.

43.

Cortical structural abnormalities in very preterm children at 7 years of age.

Zhang Y, Inder TE, Neil JJ, Dierker DL, Alexopoulos D, Anderson PJ, Van Essen DC.

Neuroimage. 2015 Apr 1;109:469-79. doi: 10.1016/j.neuroimage.2015.01.005. Epub 2015 Jan 20.

44.

An allometric scaling relationship in the brain of preterm infants.

Paul RA, Smyser CD, Rogers CE, English I, Wallendorf M, Alexopoulos D, Meyer EJ, Van Essen DC, Neil JJ, Inder TE.

Ann Clin Transl Neurol. 2014 Nov;1(11):933-7. doi: 10.1002/acn3.130. Epub 2014 Oct 9.

45.

Regional impairments of cortical folding in premature infants.

Engelhardt E, Inder TE, Alexopoulos D, Dierker DL, Hill J, Van Essen D, Neil JJ.

Ann Neurol. 2015 Jan;77(1):154-62. doi: 10.1002/ana.24313. Epub 2014 Dec 13.

46.

Correspondences between retinotopic areas and myelin maps in human visual cortex.

Abdollahi RO, Kolster H, Glasser MF, Robinson EC, Coalson TS, Dierker D, Jenkinson M, Van Essen DC, Orban GA.

Neuroimage. 2014 Oct 1;99:509-24. doi: 10.1016/j.neuroimage.2014.06.042. Epub 2014 Jun 24.

47.

MSM: a new flexible framework for Multimodal Surface Matching.

Robinson EC, Jbabdi S, Glasser MF, Andersson J, Burgess GC, Harms MP, Smith SM, Van Essen DC, Jenkinson M.

Neuroimage. 2014 Oct 15;100:414-26. doi: 10.1016/j.neuroimage.2014.05.069. Epub 2014 Jun 2.

48.

Interoperable atlases of the human brain.

Amunts K, Hawrylycz MJ, Van Essen DC, Van Horn JD, Harel N, Poline JB, De Martino F, Bjaalie JG, Dehaene-Lambertz G, Dehaene S, Valdes-Sosa P, Thirion B, Zilles K, Hill SL, Abrams MB, Tass PA, Vanduffel W, Evans AC, Eickhoff SB.

Neuroimage. 2014 Oct 1;99:525-32. doi: 10.1016/j.neuroimage.2014.06.010. Epub 2014 Jun 15. Review.

PMID:
24936682
49.

Functional connectomics from resting-state fMRI.

Smith SM, Vidaurre D, Beckmann CF, Glasser MF, Jenkinson M, Miller KL, Nichols TE, Robinson EC, Salimi-Khorshidi G, Woolrich MW, Barch DM, Uğurbil K, Van Essen DC.

Trends Cogn Sci. 2013 Dec;17(12):666-82. doi: 10.1016/j.tics.2013.09.016. Epub 2013 Nov 12. Review.

50.

Cartography and connectomes.

Van Essen DC.

Neuron. 2013 Oct 30;80(3):775-90. doi: 10.1016/j.neuron.2013.10.027. Review.

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