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Alterations in rat adipose tissue transcriptome and proteome in response to prolonged fasting.

Ibrahim M, Ayoub D, Wasselin T, Van Dorsselaer A, Le Maho Y, Raclot T, Bertile F.

Biol Chem. 2019 Aug 1. pii: /j/bchm.just-accepted/hsz-2019-0184/hsz-2019-0184.xml. doi: 10.1515/hsz-2019-0184. [Epub ahead of print]


General lack of structural characterization of chemically synthesized long peptides.

Boutin JA, Tartar AL, van Dorsselaer A, Vaudry H.

Protein Sci. 2019 May;28(5):857-867. doi: 10.1002/pro.3601. Epub 2019 Mar 25. Review.


In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes.

Tascher G, Burban A, Camus S, Plumel M, Chanon S, Le Guevel R, Shevchenko V, Van Dorsselaer A, Lefai E, Guguen-Guillouzo C, Bertile F.

Cells. 2019 Feb 21;8(2). pii: E192. doi: 10.3390/cells8020192.


An essential role for α4A-tubulin in platelet biogenesis.

Strassel C, Magiera MM, Dupuis A, Batzenschlager M, Hovasse A, Pleines I, Guéguen P, Eckly A, Moog S, Mallo L, Kimmerlin Q, Chappaz S, Strub JM, Kathiresan N, de la Salle H, Van Dorsselaer A, Ferec C, Py JY, Gachet C, Schaeffer-Reiss C, Kile BT, Janke C, Lanza F.

Life Sci Alliance. 2019 Feb 13;2(1). pii: e201900309. doi: 10.26508/lsa.201900309. Print 2019 Feb.


Stable isotope-labelled morphine to study in vivo central and peripheral morphine glucuronidation and brain transport in tolerant mice.

Weinsanto I, Laux-Biehlmann A, Mouheiche J, Maduna T, Delalande F, Chavant V, Gabel F, Darbon P, Charlet A, Poisbeau P, Lamshöft M, Van Dorsselaer A, Cianferani S, Parat MO, Goumon Y.

Br J Pharmacol. 2018 Oct;175(19):3844-3856. doi: 10.1111/bph.14454. Epub 2018 Aug 31.


Multi-OMICS analyses unveil STAT1 as a potential modifier gene in mevalonate kinase deficiency.

Carapito R, Carapito C, Morlon A, Paul N, Vaca Jacome AS, Alsaleh G, Rolli V, Tahar O, Aouadi I, Rompais M, Delalande F, Pichot A, Georgel P, Messer L, Sibilia J, Cianferani S, Van Dorsselaer A, Bahram S.

Ann Rheum Dis. 2018 Nov;77(11):1675-1687. doi: 10.1136/annrheumdis-2018-213524. Epub 2018 Jul 20.


Extended investigation of tube-gel sample preparation: a versatile and simple choice for high throughput quantitative proteomics.

Muller L, Fornecker L, Chion M, Van Dorsselaer A, Cianférani S, Rabilloud T, Carapito C.

Sci Rep. 2018 May 29;8(1):8260. doi: 10.1038/s41598-018-26600-4.


The Circulating Protease Persephone Is an Immune Sensor for Microbial Proteolytic Activities Upstream of the Drosophila Toll Pathway.

Issa N, Guillaumot N, Lauret E, Matt N, Schaeffer-Reiss C, Van Dorsselaer A, Reichhart JM, Veillard F.

Mol Cell. 2018 Feb 15;69(4):539-550.e6. doi: 10.1016/j.molcel.2018.01.029.


Dual Data-Independent Acquisition Approach Combining Global HCP Profiling and Absolute Quantification of Key Impurities during Bioprocess Development.

Husson G, Delangle A, O'Hara J, Cianferani S, Gervais A, Van Dorsselaer A, Bracewell D, Carapito C.

Anal Chem. 2018 Jan 16;90(2):1241-1247. doi: 10.1021/acs.analchem.7b03965. Epub 2017 Dec 28.


Peptide deformylases from Vibrio parahaemolyticus phage and bacteria display similar deformylase activity and inhibitor binding clefts.

Grzela R, Nusbaum J, Fieulaine S, Lavecchia F, Desmadril M, Nhiri N, Van Dorsselaer A, Cianferani S, Jacquet E, Meinnel T, Giglione C.

Biochim Biophys Acta Proteins Proteom. 2018 Feb;1866(2):348-355. doi: 10.1016/j.bbapap.2017.10.007. Epub 2017 Oct 31.


Hemoglobin Kirklareli (α H58L), a New Variant Associated with Iron Deficiency and Increased CO Binding.

Bissé E, Schaeffer-Reiss C, Van Dorsselaer A, Alayi TD, Epting T, Winkler K, Benitez Cardenas AS, Soman J, Birukou I, Samuel PP, Olson JS.

J Biol Chem. 2017 Feb 10;292(6):2542-2555. doi: 10.1074/jbc.M116.764274. Epub 2016 Dec 23.


The Safety Limits Of An Extended Fast: Lessons from a Non-Model Organism.

Bertile F, Fouillen L, Wasselin T, Maes P, Le Maho Y, Van Dorsselaer A, Raclot T.

Sci Rep. 2016 Dec 19;6:39008. doi: 10.1038/srep39008.


A ruthenium anticancer compound interacts with histones and impacts differently on epigenetic and death pathways compared to cisplatin.

Licona C, Spaety ME, Capuozzo A, Ali M, Santamaria R, Armant O, Delalande F, Van Dorsselaer A, Cianferani S, Spencer J, Pfeffer M, Mellitzer G, Gaiddon C.

Oncotarget. 2017 Jan 10;8(2):2568-2584. doi: 10.18632/oncotarget.13711.


Benchmarking sample preparation/digestion protocols reveals tube-gel being a fast and repeatable method for quantitative proteomics.

Muller L, Fornecker L, Van Dorsselaer A, Cianférani S, Carapito C.

Proteomics. 2016 Dec;16(23):2953-2961. doi: 10.1002/pmic.201600288.


MetAP1 and MetAP2 drive cell selectivity for a potent anti-cancer agent in synergy, by controlling glutathione redox state.

Frottin F, Bienvenut WV, Bignon J, Jacquet E, Vaca Jacome AS, Van Dorsselaer A, Cianferani S, Carapito C, Meinnel T, Giglione C.

Oncotarget. 2016 Sep 27;7(39):63306-63323. doi: 10.18632/oncotarget.11216.


An evolutionary conserved zinc finger protein is involved in Toxoplasma gondii mRNA nuclear export.

Gissot M, Hovasse A, Chaloin L, Schaeffer-Reiss C, Van Dorsselaer A, Tomavo S.

Cell Microbiol. 2017 Feb;19(2). doi: 10.1111/cmi.12644. Epub 2016 Jul 26.


Developing a reference system for the IFCC standardization of HbA2.

Paleari R, Caruso D, Kaiser P, Arsene CG, Schaeffer-Reiss C, Van Dorsselaer A, Bissé E, Ospina M, De Jesús VR, Wild B, Mosca A; IFCC Working Group on Standardisation of Hemoglobin A2 (WG-HbA2).

Clin Chim Acta. 2017 Apr;467:21-26. doi: 10.1016/j.cca.2016.05.023. Epub 2016 May 27. Review.


Unconventional endosome-like compartment and retromer complex in Toxoplasma gondii govern parasite integrity and host infection.

Sangaré LO, Alayi TD, Westermann B, Hovasse A, Sindikubwabo F, Callebaut I, Werkmeister E, Lafont F, Slomianny C, Hakimi MA, Van Dorsselaer A, Schaeffer-Reiss C, Tomavo S.

Nat Commun. 2016 Apr 11;7:11191. doi: 10.1038/ncomms11191.


Spatio-Temporal Detection of the Thiomonas Population and the Thiomonas Arsenite Oxidase Involved in Natural Arsenite Attenuation Processes in the Carnoulès Acid Mine Drainage.

Hovasse A, Bruneel O, Casiot C, Desoeuvre A, Farasin J, Hery M, Van Dorsselaer A, Carapito C, Arsène-Ploetze F.

Front Cell Dev Biol. 2016 Feb 1;4:3. doi: 10.3389/fcell.2016.00003. eCollection 2016.


In-depth glycoproteomic characterisation of grape berry vacuolar invertase using a combination of mass spectrometry-based approaches.

Hovasse A, Alayi TD, Van Dorsselaer A, Marchal R, Jégou S, Schaeffer-Reiss C.

Food Chem. 2016 Jun 1;200:237-44. doi: 10.1016/j.foodchem.2016.01.024. Epub 2016 Jan 8.


The Pollen Coat Proteome: At the Cutting Edge of Plant Reproduction.

Rejón JD, Delalande F, Schaeffer-Reiss C, Alché JD, Rodríguez-García MI, Van Dorsselaer A, Castro AJ.

Proteomes. 2016 Jan 29;4(1). pii: E5. doi: 10.3390/proteomes4010005. Review.


Convergent Signaling Pathways Controlled by LRP1 (Receptor-related Protein 1) Cytoplasmic and Extracellular Domains Limit Cellular Cholesterol Accumulation.

El Asmar Z, Terrand J, Jenty M, Host L, Mlih M, Zerr A, Justiniano H, Matz RL, Boudier C, Scholler E, Garnier JM, Bertaccini D, Thiersé D, Schaeffer C, Van Dorsselaer A, Herz J, Bruban V, Boucher P.

J Biol Chem. 2016 Mar 4;291(10):5116-27. doi: 10.1074/jbc.M116.714485. Epub 2016 Jan 19.


Probing Supramolecular Interactions between a Crown Ether Appended Zinc Phthalocyanine and an Ammonium Group Appended to a C60 Derivative.

Lederer M, Hahn U, Strub JM, Cianférani S, Van Dorsselaer A, Nierengarten JF, Torres T, Guldi DM.

Chemistry. 2016 Feb;22(6):2051-2059. doi: 10.1002/chem.201503315. Epub 2016 Jan 7.


A combined proteomic and targeted analysis unravels new toxic mechanisms for zinc oxide nanoparticles in macrophages.

Aude-Garcia C, Dalzon B, Ravanat JL, Collin-Faure V, Diemer H, Strub JM, Cianferani S, Van Dorsselaer A, Carrière M, Rabilloud T.

J Proteomics. 2016 Feb 16;134:174-185. doi: 10.1016/j.jprot.2015.12.013. Epub 2015 Dec 19.


Cutting-edge mass spectrometry methods for the multi-level structural characterization of antibody-drug conjugates.

Beck A, Terral G, Debaene F, Wagner-Rousset E, Marcoux J, Janin-Bussat MC, Colas O, Van Dorsselaer A, Cianférani S.

Expert Rev Proteomics. 2016;13(2):157-83. doi: 10.1586/14789450.2016.1132167. Epub 2016 Jan 22. Review.


[Altruism in the retina: sticks feed cones].

Léveillard T, Van Dorsselaer A, Sahel JA.

Med Sci (Paris). 2015 Oct;31(10):828-30. doi: 10.1051/medsci/20153110005. Epub 2015 Oct 19. French. No abstract available.


Ion mobility coupled to native mass spectrometry as a relevant tool to investigate extremely small ligand-induced conformational changes.

Stojko J, Fieulaine S, Petiot-Bécard S, Van Dorsselaer A, Meinnel T, Giglione C, Cianférani S.

Analyst. 2015 Nov 7;140(21):7234-45. doi: 10.1039/c5an01311a. Epub 2015 Sep 24.


Differential proteomics reveals age-dependent liver oxidative costs of innate immune activation in mice.

Plumel MI, Benhaim-Delarbre M, Rompais M, Thiersé D, Sorci G, van Dorsselaer A, Criscuolo F, Bertile F.

J Proteomics. 2016 Mar 1;135:181-190. doi: 10.1016/j.jprot.2015.09.008. Epub 2015 Sep 12.


MAPN: First-in-Class Reagent for Kinetically Resolved Thiol-to-Thiol Conjugation.

Koniev O, Kolodych S, Baatarkhuu Z, Stojko J, Eberova J, Bonnefoy JY, Cianférani S, Van Dorsselaer A, Wagner A.

Bioconjug Chem. 2015 Sep 16;26(9):1863-7. doi: 10.1021/acs.bioconjchem.5b00440. Epub 2015 Sep 3.


Molecular responses of alveolar epithelial A549 cells to chronic exposure to titanium dioxide nanoparticles: A proteomic view.

Armand L, Biola-Clier M, Bobyk L, Collin-Faure V, Diemer H, Strub JM, Cianferani S, Van Dorsselaer A, Herlin-Boime N, Rabilloud T, Carriere M.

J Proteomics. 2016 Feb 16;134:163-173. doi: 10.1016/j.jprot.2015.08.006. Epub 2015 Aug 11.


Zinc oxide induces the stringent response and major reorientations in the central metabolism of Bacillus subtilis.

Luche S, Eymard-Vernain E, Diemer H, Van Dorsselaer A, Rabilloud T, Lelong C.

J Proteomics. 2016 Mar 1;135:170-180. doi: 10.1016/j.jprot.2015.07.018. Epub 2015 Jul 26.


Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssié D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y.

J Proteome Res. 2015 Sep 4;14(9):3621-34. doi: 10.1021/pr5010345. Epub 2015 Jul 22.


Rod-derived cone viability factor promotes cone survival by stimulating aerobic glycolysis.

Aït-Ali N, Fridlich R, Millet-Puel G, Clérin E, Delalande F, Jaillard C, Blond F, Perrocheau L, Reichman S, Byrne LC, Olivier-Bandini A, Bellalou J, Moyse E, Bouillaud F, Nicol X, Dalkara D, van Dorsselaer A, Sahel JA, Léveillard T.

Cell. 2015 May 7;161(4):817-32. doi: 10.1016/j.cell.2015.03.023.


N-terminome analysis of the human mitochondrial proteome.

Vaca Jacome AS, Rabilloud T, Schaeffer-Reiss C, Rompais M, Ayoub D, Lane L, Bairoch A, Van Dorsselaer A, Carapito C.

Proteomics. 2015 Jul;15(14):2519-24. doi: 10.1002/pmic.201400617. Epub 2015 Jun 8.


Comparative proteomic analysis of the molecular responses of mouse macrophages to titanium dioxide and copper oxide nanoparticles unravels some toxic mechanisms for copper oxide nanoparticles in macrophages.

Triboulet S, Aude-Garcia C, Armand L, Collin-Faure V, Chevallet M, Diemer H, Gerdil A, Proamer F, Strub JM, Habert A, Herlin N, Van Dorsselaer A, Carrière M, Rabilloud T.

PLoS One. 2015 Apr 22;10(4):e0124496. doi: 10.1371/journal.pone.0124496. eCollection 2015.


Cutting-edge mass spectrometry characterization of originator, biosimilar and biobetter antibodies.

Beck A, Debaene F, Diemer H, Wagner-Rousset E, Colas O, Van Dorsselaer A, Cianférani S.

J Mass Spectrom. 2015 Feb;50(2):285-97. doi: 10.1002/jms.3554.


Characterization of the N-terminal heterogeneities of monoclonal antibodies using in-gel charge derivatization of α-amines and LC-MS/MS.

Ayoub D, Bertaccini D, Diemer H, Wagner-Rousset E, Colas O, Cianférani S, Van Dorsselaer A, Beck A, Schaeffer-Reiss C.

Anal Chem. 2015 Apr 7;87(7):3784-90. doi: 10.1021/ac504427k. Epub 2015 Mar 26.


The plant stigma exudate. A biochemically active extracellular environment for pollen germination?

Rejón JD, Delalande F, Schaeffer-Reiss C, Carapito C, Zienkiewicz K, Alché Jde D, Rodríguez-García MI, Van Dorsselaer A, Castro AJ.

Plant Signal Behav. 2014;9(4):e28274. doi: 10.4161/psb.28274.


Combining native MS approaches to decipher archaeal box H/ACA ribonucleoprotein particle structure and activity.

Saliou JM, Manival X, Tillault AS, Atmanene C, Bobo C, Branlant C, Van Dorsselaer A, Charpentier B, Cianférani S.

Proteomics. 2015 Aug;15(16):2851-61. doi: 10.1002/pmic.201400529. Epub 2015 Apr 24.


Native mass spectrometry and ion mobility characterization of trastuzumab emtansine, a lysine-linked antibody drug conjugate.

Marcoux J, Champion T, Colas O, Wagner-Rousset E, Corvaïa N, Van Dorsselaer A, Beck A, Cianférani S.

Protein Sci. 2015 Aug;24(8):1210-23. doi: 10.1002/pro.2666. Epub 2015 Mar 31.


Differentiation between fresh and frozen-thawed sea bass (Dicentrarchus labrax) fillets using two-dimensional gel electrophoresis.

Ethuin P, Marlard S, Delosière M, Carapito C, Delalande F, Van Dorsselaer A, Dehaut A, Lencel V, Duflos G, Grard T.

Food Chem. 2015 Jun 1;176:294-301. doi: 10.1016/j.foodchem.2014.12.065. Epub 2014 Dec 23.


CBTF: new amine-to-thiol coupling reagent for preparation of antibody conjugates with increased plasma stability.

Kolodych S, Koniev O, Baatarkhuu Z, Bonnefoy JY, Debaene F, Cianférani S, Van Dorsselaer A, Wagner A.

Bioconjug Chem. 2015 Feb 18;26(2):197-200. doi: 10.1021/bc500610g. Epub 2015 Jan 23.


TG1050, an immunotherapeutic to treat chronic hepatitis B, induces robust T cells and exerts an antiviral effect in HBV-persistent mice.

Martin P, Dubois C, Jacquier E, Dion S, Mancini-Bourgine M, Godon O, Kratzer R, Lelu-Santolaria K, Evlachev A, Meritet JF, Schlesinger Y, Villeval D, Strub JM, Van Dorsselaer A, Marchand JB, Geist M, Brandely R, Findeli A, Boukhebza H, Menguy T, Silvestre N, Michel ML, Inchauspé G.

Gut. 2015 Dec;64(12):1961-71. doi: 10.1136/gutjnl-2014-308041. Epub 2014 Nov 26.


Innovative native MS methodologies for antibody drug conjugate characterization: High resolution native MS and IM-MS for average DAR and DAR distribution assessment.

Debaene F, Boeuf A, Wagner-Rousset E, Colas O, Ayoub D, Corvaïa N, Van Dorsselaer A, Beck A, Cianférani S.

Anal Chem. 2014 Nov 4;86(21):10674-83. doi: 10.1021/ac502593n. Epub 2014 Oct 21.


Litter size manipulation in laboratory mice: an example of how proteomic analysis can uncover new mechanisms underlying the cost of reproduction.

Plumel MI, Stier A, Thiersé D, van Dorsselaer A, Criscuolo F, Bertile F.

Front Zool. 2014 May 20;11:41. doi: 10.1186/1742-9994-11-41. eCollection 2014.


Flowering as the most highly sensitive period of grapevine (Vitis vinifera L. cv Mourvèdre) to the Botryosphaeria dieback agents Neofusicoccum parvum and Diplodia seriata infection.

Spagnolo A, Larignon P, Magnin-Robert M, Hovasse A, Cilindre C, Van Dorsselaer A, Clément C, Schaeffer-Reiss C, Fontaine F.

Int J Mol Sci. 2014 May 30;15(6):9644-69. doi: 10.3390/ijms15069644.


Enzymatic cocktails produced by Fusarium graminearum under submerged fermentation using different lignocellulosic biomasses.

Debeire P, Delalande F, Habrylo O, Jeltsch JM, Van Dorsselaer A, Phalip V.

FEMS Microbiol Lett. 2014 Jun;355(2):116-23. doi: 10.1111/1574-6968.12467. Epub 2014 May 29.


Analysis of cellular responses of macrophages to zinc ions and zinc oxide nanoparticles: a combined targeted and proteomic approach.

Triboulet S, Aude-Garcia C, Armand L, Gerdil A, Diemer H, Proamer F, Collin-Faure V, Habert A, Strub JM, Hanau D, Herlin N, Carrière M, Van Dorsselaer A, Rabilloud T.

Nanoscale. 2014 Jun 7;6(11):6102-14. doi: 10.1039/c4nr00319e. Epub 2014 May 1.


Differential responses of three grapevine cultivars to Botryosphaeria dieback.

Spagnolo A, Magnin-Robert M, Alayi TD, Cilindre C, Schaeffer-Reiss C, Van Dorsselaer A, Clément C, Larignon P, Ramirez-Suero M, Chong J, Bertsch C, Abou-Mansour E, Fontaine F.

Phytopathology. 2014 Oct;104(10):1021-35. doi: 10.1094/PHYTO-01-14-0007-R.


Therapeutic strategy for handling inherited retinal degenerations in a gene-independent manner using rod-derived cone viability factors.

Léveillard T, Fridlich R, Clérin E, Aït-Ali N, Millet-Puel G, Jaillard C, Yang Y, Zack D, van-Dorsselaer A, Sahel JA.

C R Biol. 2014 Mar;337(3):207-13. doi: 10.1016/j.crvi.2013.12.002. Epub 2014 Feb 20. Review.


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